MS023822 (gene) Bitter gourd (TR) v1

Overview
NameMS023822
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionExocyst subunit Exo70 family protein
Locationscaffold207: 983487 .. 983658 (-)
RNA-Seq ExpressionMS023822
SyntenyMS023822
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATCGGTGGTGGTGATTCAGACGAACCATTCGTTCGTGAGGAGGTTCAAGCAACATTCCGAATTGGAAAGACAATTGGAAGAAGTACATAAAGTATCAGTCTAAGGATATTGAAGGTTGGATTGATAACCTATTTAATGGAAATCGTGGCTCAATGGAGAGGAGGAGAATG

mRNA sequence

GTATCGGTGGTGGTGATTCAGACGAACCATTCGTTCGTGAGGAGGTTCAAGCAACATTCCGAATTGGAAAGACAAAAGAAGTACATAAAGTATCAGTCTAAGGATATTGAAGGTTGGATTGATAACCTATTTAATGGAAATCGTGGCTCAATGGAGAGGAGGAGAATG

Coding sequence (CDS)

GTATCGGTGGTGGTGATTCAGACGAACCATTCGTTCGTGAGGAGGTTCAAGCAACATTCCGAATTGGAAAGACAAAAGAAGTACATAAAGTATCAGTCTAAGGATATTGAAGGTTGGATTGATAACCTATTTAATGGAAATCGTGGCTCAATGGAGAGGAGGAGAATG

Protein sequence

VSVVVIQTNHSFVRRFKQHSELERQKKYIKYQSKDIEGWIDNLFNGNRGSMERRRM
Homology
BLAST of MS023822 vs. NCBI nr
Match: XP_004152304.2 (exocyst complex component EXO70B1 [Cucumis sativus] >KAE8649095.1 hypothetical protein Csa_014561 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 618 VSAVMIPAYRSFVGRFKQHFDAGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 674

BLAST of MS023822 vs. NCBI nr
Match: KAA0044561.1 (exocyst complex component EXO70B1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 620 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 676

BLAST of MS023822 vs. NCBI nr
Match: XP_008454027.1 (PREDICTED: exocyst complex component EXO70B1 [Cucumis melo] >TYK17023.1 exocyst complex component EXO70B1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 620 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 676

BLAST of MS023822 vs. NCBI nr
Match: XP_022145112.1 (exocyst complex component EXO70B1-like [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRR 56
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRR
Sbjct: 608 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMARRR 663

BLAST of MS023822 vs. NCBI nr
Match: XP_038888220.1 (exocyst complex component EXO70B1 [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRR 56
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRR
Sbjct: 618 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRR 673

BLAST of MS023822 vs. ExPASy TrEMBL
Match: A0A0A0KU43 (Exocyst subunit Exo70 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G011810 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 517 VSAVMIPAYRSFVGRFKQHFDAGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 573

BLAST of MS023822 vs. ExPASy TrEMBL
Match: A0A5A7TSN6 (Exocyst subunit Exo70 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003100 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 620 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 676

BLAST of MS023822 vs. ExPASy TrEMBL
Match: A0A5D3CYM8 (Exocyst subunit Exo70 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001690 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 620 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 676

BLAST of MS023822 vs. ExPASy TrEMBL
Match: A0A1S3BXN3 (Exocyst subunit Exo70 family protein OS=Cucumis melo OX=3656 GN=LOC103494576 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRRM 57
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRRM
Sbjct: 620 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRRM 676

BLAST of MS023822 vs. ExPASy TrEMBL
Match: A0A6J1CVK3 (Exocyst subunit Exo70 family protein OS=Momordica charantia OX=3673 GN=LOC111014629 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.0e-07
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRR 56
           VS V+I    SFV RFKQH +  RQ +KYIKYQ +DIEG ID+LF+GN  SM RRR
Sbjct: 608 VSAVMIPAYRSFVGRFKQHFDPGRQSEKYIKYQPEDIEGLIDDLFDGNTASMARRR 663

BLAST of MS023822 vs. TAIR 10
Match: AT5G13150.1 (exocyst subunit exo70 family protein C1 )

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGSMERRR 56
           +S +VI    SF  R+KQH +  +Q  KY+KYQ +DIE +ID+LF+GN  SM R+R
Sbjct: 598 ISSLVIPAYRSFFGRYKQHLDSGKQTDKYVKYQPEDIESFIDDLFDGNPTSMARKR 653

BLAST of MS023822 vs. TAIR 10
Match: AT5G13990.1 (exocyst subunit exo70 family protein C2 )

HSP 1 Score: 43.5 bits (101), Expect = 6.5e-05
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 1   VSVVVIQTNHSFVRRFKQHSELERQ-KKYIKYQSKDIEGWIDNLFNGNRGS 51
           ++ V+I    +F+ RF Q+ +  RQ +KY+KYQ +DIE  ID LF GN  S
Sbjct: 635 ITAVMIPAYRAFMARFGQYLDPGRQTEKYVKYQPEDIEDLIDQLFEGNTSS 685

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004152304.22.2e-0763.16exocyst complex component EXO70B1 [Cucumis sativus] >KAE8649095.1 hypothetical p... [more]
KAA0044561.13.8e-0763.16exocyst complex component EXO70B1 [Cucumis melo var. makuwa][more]
XP_008454027.13.8e-0763.16PREDICTED: exocyst complex component EXO70B1 [Cucumis melo] >TYK17023.1 exocyst ... [more]
XP_022145112.11.4e-0662.50exocyst complex component EXO70B1-like [Momordica charantia][more]
XP_038888220.11.9e-0662.50exocyst complex component EXO70B1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU431.1e-0763.16Exocyst subunit Exo70 family protein OS=Cucumis sativus OX=3659 GN=Csa_4G011810 ... [more]
A0A5A7TSN61.8e-0763.16Exocyst subunit Exo70 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CYM81.8e-0763.16Exocyst subunit Exo70 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BXN31.8e-0763.16Exocyst subunit Exo70 family protein OS=Cucumis melo OX=3656 GN=LOC103494576 PE=... [more]
A0A6J1CVK37.0e-0762.50Exocyst subunit Exo70 family protein OS=Momordica charantia OX=3673 GN=LOC111014... [more]
Match NameE-valueIdentityDescription
AT5G13150.11.1e-0750.00exocyst subunit exo70 family protein C1 [more]
AT5G13990.16.5e-0545.10exocyst subunit exo70 family protein C2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.170Exocyst complex component Exo70coord: 1..54
e-value: 1.7E-6
score: 29.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023822.1MS023822.1mRNA