MS023807 (gene) Bitter gourd (TR) v1

Overview


Name	MS023807
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein L2 family
Location	scaffold207: 682082 .. 682594 (-)
RNA-Seq Expression	MS023807
Synteny	MS023807

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGCTGGGACATACGGTCGTACATTCCGTGAGAGGATGACCAATTACATGGCTACTCTCGACATCAATTCACAGATCGGAAGCTGCATGCCGCTTTCTGCAATGCGTATCGGTACAATGATCCACAACATCGAAATGAATCCGGGTCAAGGTGGGAAGCTGGTTCGAGCAGCAGGAACATGTGCAAAGATACTGAAAGAGCCAACATCAAGATACTGCTTGGTGAGGCTCCCTTCAGGTACTGAGAAGTTGATCGATTCTCGATGCAGGGCGACGATTGGTCAGGTGTCTAACCCAAGCCATGGAACTAAGAAACTGAGAAAGGCAGGGCAGAGCCGGTGGTTGGGTCGACGACCGGTGGTTCGGGGTGTGGCGATGAACCCGGTGGATCATCCTCATGGAGGAGGTGAGGGTAGGAGCAAGAGTAGTGGGAGCTTTGGCAAAGGGTCTCGCACACCTTGGGGGAAGCCTACCAAGTCAGGTTACAAGACTGGACCTCTCAAGCGCAAGAAA

mRNA sequence

ATAGCTGGGACATACGGTCGTACATTCCGTGAGAGGATGACCAATTACATGGCTACTCTCGACATCAATTCACAGATCGGAAGCTGCATGCCGCTTTCTGCAATGCGTATCGGTACAATGATCCACAACATCGAAATGAATCCGGGTCAAGGTGGGAAGCTGGTTCGAGCAGCAGGAACATGTGCAAAGATACTGAAAGAGCCAACATCAAGATACTGCTTGGTGAGGCTCCCTTCAGGTACTGAGAAGTTGATCGATTCTCGATGCAGGGCGACGATTGGTCAGGTGTCTAACCCAAGCCATGGAACTAAGAAACTGAGAAAGGCAGGGCAGAGCCGGTGGTTGGGTCGACGACCGGTGGTTCGGGGTGTGGCGATGAACCCGGTGGATCATCCTCATGGAGGAGGTGAGGGTAGGAGCAAGAGTAGTGGGAGCTTTGGCAAAGGGTCTCGCACACCTTGGGGGAAGCCTACCAAGTCAGGTTACAAGACTGGACCTCTCAAGCGCAAGAAA

Coding sequence (CDS)

ATAGCTGGGACATACGGTCGTACATTCCGTGAGAGGATGACCAATTACATGGCTACTCTCGACATCAATTCACAGATCGGAAGCTGCATGCCGCTTTCTGCAATGCGTATCGGTACAATGATCCACAACATCGAAATGAATCCGGGTCAAGGTGGGAAGCTGGTTCGAGCAGCAGGAACATGTGCAAAGATACTGAAAGAGCCAACATCAAGATACTGCTTGGTGAGGCTCCCTTCAGGTACTGAGAAGTTGATCGATTCTCGATGCAGGGCGACGATTGGTCAGGTGTCTAACCCAAGCCATGGAACTAAGAAACTGAGAAAGGCAGGGCAGAGCCGGTGGTTGGGTCGACGACCGGTGGTTCGGGGTGTGGCGATGAACCCGGTGGATCATCCTCATGGAGGAGGTGAGGGTAGGAGCAAGAGTAGTGGGAGCTTTGGCAAAGGGTCTCGCACACCTTGGGGGAAGCCTACCAAGTCAGGTTACAAGACTGGACCTCTCAAGCGCAAGAAA

Protein sequence

IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK

Homology

[Close]

BLAST of MS023807 vs. NCBI nr
Match: XP_022158562.1 (uncharacterized protein LOC111025017 [Momordica charantia] >XP_022158563.1 uncharacterized protein LOC111025017 [Momordica charantia] >XP_022158564.1 uncharacterized protein LOC111025017 [Momordica charantia])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT
Sbjct: 44  IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 103

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV
Sbjct: 104 CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 163

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK
Sbjct: 164 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 214

[Close]

BLAST of MS023807 vs. NCBI nr
Match: XP_022932015.1 (uncharacterized protein LOC111438344 [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 6.4e-90
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRT RERMTNYMATLDINSQIGSCMPLSAMRIGT+IHNIEMNPGQGGKLVRAAGT
Sbjct: 40  IAGTYGRTLRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEMNPGQGGKLVRAAGT 99

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDS+CRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 100 CAKILKEPTSRYCLVRLPSGTEKLIDSKCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 159

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTK GYKTGPLKRKK
Sbjct: 160 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKCGYKTGPLKRKK 210

[Close]

BLAST of MS023807 vs. NCBI nr
Match: XP_023512394.1 (uncharacterized protein LOC111777160 [Cucurbita pepo subsp. pepo] >KAG6571355.1 60S ribosomal protein L2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011127.1 60S ribosomal protein L2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.9 bits (873), Expect = 6.4e-90
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRT RERMTNYMATLDINSQIGSCMPLSAMRIGT+IHNIEMNPGQGGKLVRAAGT
Sbjct: 40  IAGTYGRTLRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEMNPGQGGKLVRAAGT 99

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDS+CRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 100 CAKILKEPTSRYCLVRLPSGTEKLIDSKCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 159

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTK GYKTGPLKRKK
Sbjct: 160 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKCGYKTGPLKRKK 210

[Close]

BLAST of MS023807 vs. NCBI nr
Match: XP_022971723.1 (uncharacterized protein LOC111470392 [Cucurbita maxima])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGT+IHNI MNPGQGGKLVR+AGT
Sbjct: 40  IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIGMNPGQGGKLVRSAGT 99

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDS+CRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 100 CAKILKEPTSRYCLVRLPSGTEKLIDSKCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 159

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTK GYKTGPLKRKK
Sbjct: 160 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKCGYKTGPLKRKK 210

[Close]

BLAST of MS023807 vs. NCBI nr
Match: XP_023007226.1 (uncharacterized protein LOC111499776 isoform X2 [Cucurbita maxima] >XP_023007227.1 uncharacterized protein LOC111499776 isoform X2 [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 3.0e-87
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           +AG YGRT RERM+NYMAT+DINSQIGSCMPLSAMRIGT+IHN+E+NPGQGGKLVR+AGT
Sbjct: 43  LAGMYGRTLRERMSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGT 102

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 103 CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 162

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTG LKRKK
Sbjct: 163 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 213

[Close]

BLAST of MS023807 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-54
Identity = 103/146 (70.55%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 20  LDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVRLPS 79
           LD+NS++G+ +PL+ +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S+ CLVRLPS
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPS 413

Query: 80  GTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 139
           G EKLIDSRCRATIG VSNP+HG +KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR
Sbjct: 414 GVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGR 473

Query: 140 SKSSGSFGKGSRTPWGKPTKSGYKTG 166
           +K     G+ S +PWGKPTK+G++ G
Sbjct: 474 TKG----GRPSVSPWGKPTKAGFRAG 494

[Close]

BLAST of MS023807 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-54
Identity = 103/146 (70.55%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 20  LDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVRLPS 79
           LD+NS++G+ +PL+ +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S+ CLVRLPS
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPS 413

Query: 80  GTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 139
           G EKLIDSRCRATIG VSNP+HG +KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR
Sbjct: 414 GVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGR 473

Query: 140 SKSSGSFGKGSRTPWGKPTKSGYKTG 166
           +K     G+ S +PWGKPTK+G++ G
Sbjct: 474 TKG----GRPSVSPWGKPTKAGFRAG 494

[Close]

BLAST of MS023807 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-54
Identity = 103/146 (70.55%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 20  LDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVRLPS 79
           LD+NS++G+ +PL+ +R+GT +H+IE +PGQG KL RAAGT AKI+KEP S+ CLVRLPS
Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPS 413

Query: 80  GTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 139
           G EKLIDSRCRATIG VSNP+HG +KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR
Sbjct: 414 GVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGR 473

Query: 140 SKSSGSFGKGSRTPWGKPTKSGYKTG 166
           +K     G+ S +PWGKPTK+G++ G
Sbjct: 474 TKG----GRPSVSPWGKPTKAGFRAG 494

[Close]

BLAST of MS023807 vs. ExPASy Swiss-Prot
Match: P26859 (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 7.5e-49
Identity = 97/146 (66.44%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 26  IGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKIL-KEPTSRYCLVRLPSGTEKL 85
           +G+C+PL+ + IGT +HNIE NPGQG KL RAAGT A+I+ K   +  C+VRLPSG +KL
Sbjct: 359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKL 418

Query: 86  IDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSG 145
           IDSRCRATIG VSN +HG +K  KAGQSRWLGRRP+VRGVAMNPVDHPHGGGEGR+K   
Sbjct: 419 IDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKG-- 478

Query: 146 SFGKGSRTPWGKPTKSGYKTGPLKRK 171
             G+ S +PWGKPTK G+KT   KR+
Sbjct: 479 --GRPSVSPWGKPTKGGFKTVVRKRR 500

[Close]

BLAST of MS023807 vs. ExPASy Swiss-Prot
Match: C3P9Q8 (50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) OX=592021 GN=rplB PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 81/148 (54.73%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 17  MATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVR 76
           M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGT A++L +   +Y LVR
Sbjct: 117 MSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVR 176

Query: 77  LPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGG 136
           L SG  +L+ S CRAT+GQV N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGG
Sbjct: 177 LTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGG 236

Query: 137 EGRSKSSGSFGKGSRTPWGKPTKSGYKT 165
           EGRS       K   +PWGKPT  G+KT
Sbjct: 237 EGRSPIG---RKSPMSPWGKPT-LGFKT 259

[Close]

BLAST of MS023807 vs. ExPASy TrEMBL
Match: A0A6J1DZS5 (uncharacterized protein LOC111025017 OS=Momordica charantia OX=3673 GN=LOC111025017 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-92
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT
Sbjct: 44  IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 103

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV
Sbjct: 104 CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 163

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK
Sbjct: 164 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 214

[Close]

BLAST of MS023807 vs. ExPASy TrEMBL
Match: A0A6J1F113 (uncharacterized protein LOC111438344 OS=Cucurbita moschata OX=3662 GN=LOC111438344 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.1e-90
Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRT RERMTNYMATLDINSQIGSCMPLSAMRIGT+IHNIEMNPGQGGKLVRAAGT
Sbjct: 40  IAGTYGRTLRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIEMNPGQGGKLVRAAGT 99

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDS+CRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 100 CAKILKEPTSRYCLVRLPSGTEKLIDSKCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 159

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTK GYKTGPLKRKK
Sbjct: 160 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKCGYKTGPLKRKK 210

[Close]

BLAST of MS023807 vs. ExPASy TrEMBL
Match: A0A6J1I7S9 (uncharacterized protein LOC111470392 OS=Cucurbita maxima OX=3661 GN=LOC111470392 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.0e-90
Identity = 165/171 (96.49%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGT+IHNI MNPGQGGKLVR+AGT
Sbjct: 40  IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTIIHNIGMNPGQGGKLVRSAGT 99

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDS+CRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 100 CAKILKEPTSRYCLVRLPSGTEKLIDSKCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 159

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTK GYKTGPLKRKK
Sbjct: 160 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKCGYKTGPLKRKK 210

[Close]

BLAST of MS023807 vs. ExPASy TrEMBL
Match: A0A6J1KZY8 (uncharacterized protein LOC111499776 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499776 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           +AG YGRT RERM+NYMAT+DINSQIGSCMPLSAMRIGT+IHN+E+NPGQGGKLVR+AGT
Sbjct: 43  LAGMYGRTLRERMSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGT 102

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 103 CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 162

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTG LKRKK
Sbjct: 163 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 213

[Close]

BLAST of MS023807 vs. ExPASy TrEMBL
Match: A0A6J1L2E1 (uncharacterized protein LOC111499776 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499776 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 160/171 (93.57%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   IAGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGT 60
           +AG YGRT RERM+NYMAT+DINSQIGSCMPLSAMRIGT+IHN+E+NPGQGGKLVR+AGT
Sbjct: 104 LAGMYGRTLRERMSNYMATIDINSQIGSCMPLSAMRIGTIIHNLEINPGQGGKLVRSAGT 163

Query: 61  CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPV 120
           CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGT+KLRKAGQSRWLGRRPV
Sbjct: 164 CAKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTRKLRKAGQSRWLGRRPV 223

Query: 121 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTG LKRKK
Sbjct: 224 VRGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGTLKRKK 274

[Close]

BLAST of MS023807 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 234.2 bits (596), Expect = 7.9e-62
Identity = 117/170 (68.82%), Postives = 134/170 (78.82%), Query Frame = 0


Query: 2   AGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTC 61
           A T  ++   +M   M  +DINS IGS MPL  MRIGT+IHNIEMNPGQG K+VRAAGT 
Sbjct: 35  ADTQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTN 94

Query: 62  AKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVV 121
           AKILKEP    CL++LPSG  K I+++CRATIG VSNPSHGTKKL KAGQSRWLG RP V
Sbjct: 95  AKILKEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKV 154

Query: 122 RGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           RGVAMNP DHPHGGGEG+SKSSGS G+ S +PWGKP K GYK+  +K+KK
Sbjct: 155 RGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPWGKPCKGGYKSASVKKKK 204

[Close]

BLAST of MS023807 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 234.2 bits (596), Expect = 7.9e-62
Identity = 117/170 (68.82%), Postives = 134/170 (78.82%), Query Frame = 0


Query: 2   AGTYGRTFRERMTNYMATLDINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTC 61
           A T  ++   +M   M  +DINS IGS MPL  MRIGT+IHNIEMNPGQG K+VRAAGT 
Sbjct: 35  ADTQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTN 94

Query: 62  AKILKEPTSRYCLVRLPSGTEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVV 121
           AKILKEP    CL++LPSG  K I+++CRATIG VSNPSHGTKKL KAGQSRWLG RP V
Sbjct: 95  AKILKEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKV 154

Query: 122 RGVAMNPVDHPHGGGEGRSKSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
           RGVAMNP DHPHGGGEG+SKSSGS G+ S +PWGKP K GYK+  +K+KK
Sbjct: 155 RGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPWGKPCKGGYKSASVKKKK 204

[Close]

BLAST of MS023807 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-31
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 0


Query: 21  DINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVRLPSG 80
           ++  ++G+ +PL+ M +GT IHNIE+  G+GG+L RAAG  AK++ +   +   ++LPSG
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAK-EGKSATLKLPSG 178

Query: 81  TEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 140
             +LI   C AT+GQV N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+
Sbjct: 179 EVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA 238

Query: 141 KSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
                  K   TPWG P   G +T   KRKK
Sbjct: 239 PIG---RKKPVTPWGYPA-LGRRT--RKRKK 262

[Close]

BLAST of MS023807 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-31
Identity = 74/151 (49.01%), Postives = 97/151 (64.24%), Query Frame = 0


Query: 21  DINSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKILKEPTSRYCLVRLPSG 80
           ++  ++G+ +PL+ M +GT IHNIE+  G+GG+L RAAG  AK++ +   +   ++LPSG
Sbjct: 119 EVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAK-EGKSATLKLPSG 178

Query: 81  TEKLIDSRCRATIGQVSNPSHGTKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 140
             +LI   C AT+GQV N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+
Sbjct: 179 EVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA 238

Query: 141 KSSGSFGKGSRTPWGKPTKSGYKTGPLKRKK 172
                  K   TPWG P   G +T   KRKK
Sbjct: 239 PIG---RKKPVTPWGYPA-LGRRT--RKRKK 262

[Close]

BLAST of MS023807 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 23  NSQIGSCMPLSAMRIGTMIHNIEMNPGQGGKLVRAAGTCAKIL-KEPTSRYCLVRLPSGT 82
           N  +G+ +PL ++  G +I N+E++ G  G L RA+G  A ++   P S    V+LPSG+
Sbjct: 96  NLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGS 155

Query: 83  EKLIDSRCRATIGQVSNPSHGTKKLRKAGQS--RWLGRR---PVVRGVAMNPVDHPHGGG 137
           +K++ S CRA IGQV+      K L KAG +  ++  +R   PVVRGVAMNPV+HPHGGG
Sbjct: 156 KKILPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGG 215

The following BLAST results are available for this feature:

BLAST of MS023807 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158562.1	2.4e-92	100.00	uncharacterized protein LOC111025017 [Momordica charantia] >XP_022158563.1 uncha...	[more]
XP_022932015.1	6.4e-90	97.08	uncharacterized protein LOC111438344 [Cucurbita moschata]	[more]
XP_023512394.1	6.4e-90	97.08	uncharacterized protein LOC111777160 [Cucurbita pepo subsp. pepo] >KAG6571355.1 ...	[more]
XP_022971723.1	1.9e-89	96.49	uncharacterized protein LOC111470392 [Cucurbita maxima]	[more]
XP_023007226.1	3.0e-87	93.57	uncharacterized protein LOC111499776 isoform X2 [Cucurbita maxima] >XP_023007227...	[more]

BLAST of MS023807 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8K6	2.6e-54	70.55	60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=...	[more]
Q2F969	2.6e-54	70.55	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G...	[more]
P92812	2.6e-54	70.55	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947...	[more]
P26859	7.5e-49	66.44	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2...	[more]
C3P9Q8	1.3e-37	54.73	50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) OX=592021 GN=rplB ...	[more]

BLAST of MS023807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZS5	1.1e-92	100.00	uncharacterized protein LOC111025017 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1F113	3.1e-90	97.08	uncharacterized protein LOC111438344 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6J1I7S9	9.0e-90	96.49	uncharacterized protein LOC111470392 OS=Cucurbita maxima OX=3661 GN=LOC111470392...	[more]
A0A6J1KZY8	1.4e-87	93.57	uncharacterized protein LOC111499776 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1L2E1	1.4e-87	93.57	uncharacterized protein LOC111499776 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS023807 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44065.1	7.9e-62	68.82	Ribosomal protein L2 family	[more]
AT2G44065.2	7.9e-62	68.82	Ribosomal protein L2 family	[more]
ATCG00830.1	3.2e-31	49.01	ribosomal protein L2	[more]
ATCG01310.1	3.2e-31	49.01	ribosomal protein L2	[more]
AT3G51190.1	4.0e-21	45.00	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 24..157 e-value: 7.4E-73 score: 258.0
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 26..155 e-value: 3.5E-53 score: 179.0
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 15..96 e-value: 3.0E-30 score: 105.9
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAM	TIGR01171	TIGR01171	coord: 18..169 e-value: 2.5E-53 score: 179.2
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 97..171 e-value: 1.8E-26 score: 94.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..171
None	No IPR available	PANTHER	PTHR13691:SF5	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	coord: 19..170
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 19..170
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 119..130
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 26..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023807.1	MS023807.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity