MS023802 (gene) Bitter gourd (TR) v1

Overview


Name	MS023802
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold207: 608871 .. 609014 (-)
RNA-Seq Expression	MS023802
Synteny	MS023802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGCCGTGGCATATGGCATTTTGGATGGCCGAGATGGTTTGGATAGCTTTGAGCGGCTGGATTTCTTCTTGCTTGGCCTTCGCCGACGAGGTCGCCGGCTCTATCAGAACTGGCGATATTGGCCCTTTCCATATTGGC

mRNA sequence

ATGGCAATGCCGTGGCATATGGCATTTTGGATGGCCGAGATGGTTTGGATAGCTTTGAGCGGCTGGATTTCTTCTTGCTTGGCCTTCGCCGACGAGGTCGCCGGCTCTATCAGAACTGGCGATATTGGCCCTTTCCATATTGGC

Coding sequence (CDS)

ATGGCAATGCCGTGGCATATGGCATTTTGGATGGCCGAGATGGTTTGGATAGCTTTGAGCGGCTGGATTTCTTCTTGCTTGGCCTTCGCCGACGAGGTCGCCGGCTCTATCAGAACTGGCGATATTGGCCCTTTCCATATTGGC

Protein sequence

MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG

Homology

[Close]

BLAST of MS023802 vs. NCBI nr
Match: XP_022158544.1 (uncharacterized protein LOC111025007 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG
Sbjct: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 48

[Close]

BLAST of MS023802 vs. NCBI nr
Match: XP_015869676.1 (uncharacterized protein LOC107406972 [Ziziphus jujuba] >XP_015869682.1 uncharacterized protein LOC107406979 [Ziziphus jujuba] >XP_015900612.1 uncharacterized protein LOC107433778 [Ziziphus jujuba] >XP_024925440.1 uncharacterized protein LOC107406972 [Ziziphus jujuba] >XP_024926073.1 uncharacterized protein LOC107410217 [Ziziphus jujuba] >XP_024926075.1 uncharacterized protein LOC107410220 [Ziziphus jujuba])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPW M  WMA+MVWIAL+GW+SSCL  ADEVAGS+RTGDIGPFH+G
Sbjct: 1  MAMPWGMTLWMAKMVWIALAGWVSSCLTVADEVAGSLRTGDIGPFHVG 48

[Close]

BLAST of MS023802 vs. NCBI nr
Match: XP_021827888.1 (uncharacterized protein LOC110768464 [Prunus avium])

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPW M FWMA+MVW+AL+GW+SSCL  ADEVAGSIRTGDIG FH+G
Sbjct: 1  MAMPWAMTFWMAKMVWLALTGWVSSCLTVADEVAGSIRTGDIGAFHVG 48

[Close]

BLAST of MS023802 vs. NCBI nr
Match: XP_008387397.1 (uncharacterized protein LOC103449856 [Malus domestica] >XP_009339997.1 PREDICTED: uncharacterized protein LOC103932171 [Pyrus x bretschneideri] >XP_009346134.1 PREDICTED: uncharacterized protein LOC103937884 [Pyrus x bretschneideri] >XP_028954576.1 uncharacterized protein LOC103449856 [Malus domestica])

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPW +  WMA+MVW+AL+GW+SSCLA ADEVAGS+RTGDIGPFH+G
Sbjct: 1  MAMPWGVTVWMAKMVWLALTGWVSSCLAVADEVAGSLRTGDIGPFHVG 48

[Close]

BLAST of MS023802 vs. NCBI nr
Match: RXH80952.1 (hypothetical protein DVH24_004866 [Malus domestica])

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1   MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
           MAMPW +  WMA+MVW+AL+GW+SSCLA ADEVAGS+RTGDIGPFH+G
Sbjct: 781 MAMPWGVTVWMAKMVWLALTGWVSSCLAVADEVAGSLRTGDIGPFHVG 828

[Close]

BLAST of MS023802 vs. ExPASy TrEMBL
Match: A0A6J1DZQ4 (uncharacterized protein LOC111025007 OS=Momordica charantia OX=3673 GN=LOC111025007 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG
Sbjct: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 48

[Close]

BLAST of MS023802 vs. ExPASy TrEMBL
Match: A0A6P3Z3U2 (uncharacterized protein LOC107406972 OS=Ziziphus jujuba OX=326968 GN=LOC107406979 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.0e-15
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPW M  WMA+MVWIAL+GW+SSCL  ADEVAGS+RTGDIGPFH+G
Sbjct: 1  MAMPWGMTLWMAKMVWIALAGWVSSCLTVADEVAGSLRTGDIGPFHVG 48

[Close]

BLAST of MS023802 vs. ExPASy TrEMBL
Match: A0A2N9FE47 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13162 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.8e-15
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPW M  WMA+MVW+AL+GW+SSCL  ADEVAGS+RTGDIGPFH+G
Sbjct: 1  MAMPWGMTLWMAKMVWVALTGWVSSCLTVADEVAGSLRTGDIGPFHVG 48

[Close]

BLAST of MS023802 vs. ExPASy TrEMBL
Match: A0A6P5TK40 (uncharacterized protein LOC110768464 OS=Prunus avium OX=42229 GN=LOC110768464 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMPW M FWMA+MVW+AL+GW+SSCL  ADEVAGSIRTGDIG FH+G
Sbjct: 1  MAMPWAMTFWMAKMVWLALTGWVSSCLTVADEVAGSIRTGDIGAFHVG 48

[Close]

BLAST of MS023802 vs. ExPASy TrEMBL
Match: A0A6J1J8T0 (uncharacterized protein LOC111482369 OS=Cucurbita maxima OX=3661 GN=LOC111482369 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAM WHMAFW+A MVW+ALS  +SSCLA ADEVAGSIRTGDIGPFHIG
Sbjct: 1  MAMTWHMAFWIANMVWVALSDCVSSCLAIADEVAGSIRTGDIGPFHIG 48

[Close]

BLAST of MS023802 vs. TAIR 10
Match: AT3G57062.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMP  MA ++  MVW +LSGW+ +C+A ADE+AGS+R GDIGPFH+G
Sbjct: 1  MAMPLGMAMYLMRMVWFSLSGWVFTCVAIADEIAGSLRNGDIGPFHVG 48

[Close]

BLAST of MS023802 vs. TAIR 10
Match: AT3G57062.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system. )

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-13
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHIG 49
          MAMP  MA ++  MVW +LSGW+ +C+A ADE+AGS+R GDIGPFH+G
Sbjct: 1  MAMPLGMAMYLMRMVWFSLSGWVFTCVAIADEIAGSLRNGDIGPFHVG 48

The following BLAST results are available for this feature:

BLAST of MS023802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158544.1	1.7e-19	100.00	uncharacterized protein LOC111025007 [Momordica charantia]	[more]
XP_015869676.1	1.2e-14	79.17	uncharacterized protein LOC107406972 [Ziziphus jujuba] >XP_015869682.1 uncharact...	[more]
XP_021827888.1	2.1e-14	79.17	uncharacterized protein LOC110768464 [Prunus avium]	[more]
XP_008387397.1	2.7e-14	77.08	uncharacterized protein LOC103449856 [Malus domestica] >XP_009339997.1 PREDICTED...	[more]
RXH80952.1	2.7e-14	77.08	hypothetical protein DVH24_004866 [Malus domestica]	[more]

BLAST of MS023802 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZQ4	8.1e-20	100.00	uncharacterized protein LOC111025007 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6P3Z3U2	6.0e-15	79.17	uncharacterized protein LOC107406972 OS=Ziziphus jujuba OX=326968 GN=LOC10740697...	[more]
A0A2N9FE47	7.8e-15	77.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13162 PE=4 SV=1	[more]
A0A6P5TK40	1.0e-14	79.17	uncharacterized protein LOC110768464 OS=Prunus avium OX=42229 GN=LOC110768464 PE...	[more]
A0A6J1J8T0	1.3e-14	83.33	uncharacterized protein LOC111482369 OS=Cucurbita maxima OX=3661 GN=LOC111482369...	[more]

BLAST of MS023802 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57062.1	1.5e-13	62.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G57062.2	1.5e-13	62.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48156	TRANSMEMBRANE PROTEIN	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023802.1	MS023802.1	mRNA