MS023801 (gene) Bitter gourd (TR) v1

Overview
NameMS023801
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein
Locationscaffold207: 585438 .. 585737 (-)
RNA-Seq ExpressionMS023801
SyntenyMS023801
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAGAGGAAACGAAGTGGTTATACATCAGAAATGGTAGATGTGGTACGAACAAATATGAGGATGCAAACAGCCCATTTGGAGAAGATGGCAACGTGGCCGGATGAAAAGGAAGAAAAAAAGATCGCACGACGCAAGATAGTACATGACCAGCTGAAACAAATACCAAACTTGGAGGCCAACGATTATGTCCGACTTGTCGGTATTTTGATGACTGATGTCAAGAAGTCCATCAGTTTCCTTGAGGTCCCAATAGAATTTAAGAAAATGTTTTGCATGCAATTGCTGGGAAAGAGCGAA

mRNA sequence

AACAAGAGGAAACGAAGTGGTTATACATCAGAAATGGTAGATGTGGTACGAACAAATATGAGGATGCAAACAGCCCATTTGGAGAAGATGGCAACGTGGCCGGATGAAAAGGAAGAAAAAAAGATCGCACGACGCAAGATAGTACATGACCAGCTGAAACAAATACCAAACTTGGAGGCCAACGATTATGTCCGACTTGTCGGTATTTTGATGACTGATGTCAAGAAGTCCATCAGTTTCCTTGAGGTCCCAATAGAATTTAAGAAAATGTTTTGCATGCAATTGCTGGGAAAGAGCGAA

Coding sequence (CDS)

AACAAGAGGAAACGAAGTGGTTATACATCAGAAATGGTAGATGTGGTACGAACAAATATGAGGATGCAAACAGCCCATTTGGAGAAGATGGCAACGTGGCCGGATGAAAAGGAAGAAAAAAAGATCGCACGACGCAAGATAGTACATGACCAGCTGAAACAAATACCAAACTTGGAGGCCAACGATTATGTCCGACTTGTCGGTATTTTGATGACTGATGTCAAGAAGTCCATCAGTTTCCTTGAGGTCCCAATAGAATTTAAGAAAATGTTTTGCATGCAATTGCTGGGAAAGAGCGAA

Protein sequence

NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKSE
Homology
BLAST of MS023801 vs. NCBI nr
Match: XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPD+KEEKKIARRKIVHDQLKQIPNLEA
Sbjct: 119 SKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEA 178

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKSE 101
           NDYVRLVGILMT+VKKSISFLEVPIEFKKMFCMQLLGKSE
Sbjct: 179 NDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLLGKSE 218

BLAST of MS023801 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 38/99 (38.38%), Postives = 69/99 (69.70%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKRS +  EM+D+V++ + MQ+ H+ ++A+W +EK E ++   K V + +  I +LE 
Sbjct: 178 SKRKRSSFQVEMIDIVKSTVEMQSTHMGRLASWQNEKYELEL---KEVVNAIYNIDDLEE 237

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKS 100
           ND V L+ +++TD++K+  FL VP   +K +C++LLG++
Sbjct: 238 NDQVTLIDLIVTDIQKTDCFLAVPEHARKRYCLRLLGRN 273

BLAST of MS023801 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 36/99 (36.36%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKR  + +EM+D++R+ + MQ+ H+ ++A+W  EK E +  RRK V + +  I  L+ 
Sbjct: 178 SKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFGRRKEVVNAIYSIDGLDE 237

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKS 100
           +D V  + +L+TD++K+  FL VP   +K +C+ LL ++
Sbjct: 238 DDQVTFIDLLVTDIQKTDCFLAVPEHARKRYCLHLLERN 276

BLAST of MS023801 vs. NCBI nr
Match: XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 34/99 (34.34%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKRS +  EM+D++R+ + M + H+ ++A+W  +K E +  R+K V + +  I  L+ 
Sbjct: 158 SKRKRSSFQVEMIDIMRSTVEMHSTHMGRLASWQKKKYELEFGRQKEVVNAIYNIDGLDE 217

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKS 100
           +  V L+ +++TD++K+  FL VP    K +C++LLG++
Sbjct: 218 DTQVTLIDLVVTDIQKTDCFLAVPEHAWKRYCLRLLGRN 256

BLAST of MS023801 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 28/77 (36.36%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 23  QTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGILMTDVKKSISFLE 82
           ++ H+ ++A+W  EK E +  RRK V + +  I  L+ +D V L+ +L+TD++K+  FL 
Sbjct: 209 ESTHMGRLASWQKEKYELEFGRRKEVVNAIYNIDGLDEDDQVTLIDLLVTDIQKTNCFLA 268

Query: 83  VPIEFKKMFCMQLLGKS 100
           VP   +K +C++LLG++
Sbjct: 269 VPEHARKRYCLRLLGRN 285

BLAST of MS023801 vs. ExPASy TrEMBL
Match: A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPD+KEEKKIARRKIVHDQLKQIPNLEA
Sbjct: 119 SKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEA 178

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKSE 101
           NDYVRLVGILMT+VKKSISFLEVPIEFKKMFCMQLLGKSE
Sbjct: 179 NDYVRLVGILMTNVKKSISFLEVPIEFKKMFCMQLLGKSE 218

BLAST of MS023801 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKRSG+ ++  D+VRT M      L ++A WP  + +     R+ +  QL+ IP L  
Sbjct: 174 SKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPELTL 233

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLL 97
            D  RL+ I+M +V    +FLEVP   K  +C  +L
Sbjct: 234 MDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIIL 269

BLAST of MS023801 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKR     E V+V+R+ M      L+ +A WP EK   ++  R  V  QL+ IP L +
Sbjct: 207 SKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRS 266

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLL 97
            D  +L+ IL   ++    FL +P E K  +C  LL
Sbjct: 267 QDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILL 302

BLAST of MS023801 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKR     E V+V+R+ M      L+ +A WP EK   ++  R  V  QL+ IP L +
Sbjct: 207 SKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRS 266

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLL 97
            D  +L+ IL   ++    FL +P E K  +C  LL
Sbjct: 267 QDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNILL 302

BLAST of MS023801 vs. ExPASy TrEMBL
Match: A0A5A7TDD6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00890 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 1   NKRKRSGYTSEMVDVVRTNMRMQTAHLEKMATWPDEKEEKKIARRKIVHDQLKQIPNLEA 60
           +KRKR+G++++  D++RT +  +   L  +A WP  + +     R+ V  QL+ IP L  
Sbjct: 225 SKRKRAGHSADSGDIIRTLIEYENEQLNHIAEWPALQRQDASETRQEVVRQLEAIPELTL 284

Query: 61  NDYVRLVGILMTDVKKSISFLEVPIEFKKMFCMQLLGKSE 101
            D  RL+ ILM +V    +FL+VP   K  +C  +L +++
Sbjct: 285 MDRCRLMRILMRNVDDMKAFLDVPNNMKYPYCSIILQENQ 324

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158565.12.2e-4597.00uncharacterized protein LOC111025018 [Momordica charantia][more]
XP_038887234.11.6e-1138.38uncharacterized protein LOC120077425 [Benincasa hispida][more]
XP_038896380.12.7e-1136.36uncharacterized protein LOC120084641 [Benincasa hispida][more]
XP_038877407.18.6e-1034.34uncharacterized protein LOC120069696 [Benincasa hispida][more]
XP_038895773.13.4e-0636.36uncharacterized protein LOC120083935 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DW731.0e-4597.00uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7TYQ61.1e-0536.46Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U0H71.4e-0535.42Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L31.4e-0535.42uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5A7TDD61.8e-0533.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023801.1MS023801.1mRNA