MS023787 (gene) Bitter gourd (TR) v1

Overview
NameMS023787
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2-like
Locationscaffold207: 363618 .. 363773 (-)
RNA-Seq ExpressionMS023787
SyntenyMS023787
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATATCTTAGAATGTGTACTATTCGCCAAACAAAATCACACTAAGGTGGAATGGAATCATGTTGATATAATGGATAGTAAAGATTTGATTGACAAATATTCATGGGGTAGATTGACTTATGACCTAACAATTGAATACATAAGGAAATTTATA

mRNA sequence

ATATATATCTTAGAATGTGTACTATTCGCCAAACAAAATCACACTAAGGTGGAATGGAATCATGTTGATATAATGGATAGTAAAGATTTGATTGACAAATATTCATGGGGTAGATTGACTTATGACCTAACAATTGAATACATAAGGAAATTTATA

Coding sequence (CDS)

ATATATATCTTAGAATGTGTACTATTCGCCAAACAAAATCACACTAAGGTGGAATGGAATCATGTTGATATAATGGATAGTAAAGATTTGATTGACAAATATTCATGGGGTAGATTGACTTATGACCTAACAATTGAATACATAAGGAAATTTATA

Protein sequence

IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI
Homology
BLAST of MS023787 vs. NCBI nr
Match: XP_024031030.1 (uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031032.1 uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031033.1 uncharacterized protein LOC21394043 [Morus notabilis])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE +L  K+    ++ NH+ ++D+ +L D Y WGRL+Y++TI YI++ I
Sbjct: 237 LYCLESLLIPKKIENNIDPNHLKMVDNPELFDNYPWGRLSYEMTIAYIKRSI 288

BLAST of MS023787 vs. NCBI nr
Match: EXC30509.1 (hypothetical protein L484_010758 [Morus notabilis])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE +L  K+    ++ NH+ ++D+ +L D Y WGRL+Y++TI YI++ I
Sbjct: 237 LYCLESLLIPKKIENNIDPNHLKMVDNPELFDNYPWGRLSYEMTIAYIKRSI 288

BLAST of MS023787 vs. NCBI nr
Match: KAA0067175.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 18/52 (34.62%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE  L  KQ    V+W+H+ ++D  ++ D Y WGR+T++L ++++ K +
Sbjct: 212 LYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVTFELLVDFMNKVV 263

BLAST of MS023787 vs. ExPASy TrEMBL
Match: W9SF50 (DUF1985 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_010758 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE +L  K+    ++ NH+ ++D+ +L D Y WGRL+Y++TI YI++ I
Sbjct: 237 LYCLESLLIPKKIENNIDPNHLKMVDNPELFDNYPWGRLSYEMTIAYIKRSI 288

BLAST of MS023787 vs. ExPASy TrEMBL
Match: A0A5A7VN68 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002520 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 18/52 (34.62%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE  L  KQ    V+W+H+ ++D  ++ D Y WGR+T++L ++++ K +
Sbjct: 212 LYFLESFLIPKQECLSVDWDHIIMVDDDEVFDGYPWGRVTFELLVDFMNKVV 263

BLAST of MS023787 vs. ExPASy TrEMBL
Match: A0A5A7TF74 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00140 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 19/52 (36.54%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE  L  KQ    VEW+H+ ++D  ++ D Y WGR+T++L ++++ + I
Sbjct: 256 LYFLESFLIPKQECLGVEWDHIIMVDDDEVFDGYLWGRVTFELLVDFMNRII 307

BLAST of MS023787 vs. ExPASy TrEMBL
Match: A0A5D3DR12 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00300 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.8e-04
Identity = 17/52 (32.69%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE  L  KQ    V+W+H+ ++D  ++ D+Y WGR+ ++L ++++ K +
Sbjct: 201 LYFLESFLIPKQECLSVDWDHIIMVDDDEVFDEYPWGRVAFELLVDFMNKTV 252

BLAST of MS023787 vs. ExPASy TrEMBL
Match: A0A5D3E1W7 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001110 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.8e-04
Identity = 17/52 (32.69%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1   IYILECVLFAKQNHTKVEWNHVDIMDSKDLIDKYSWGRLTYDLTIEYIRKFI 53
           +Y LE  L  KQ    V+W+H+ ++D  ++ D+Y WGR+ ++L ++++ K +
Sbjct: 198 LYFLESFLIPKQECLSVDWDHIIMVDDDEVFDEYPWGRVAFELLVDFMNKTV 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024031030.12.8e-0440.38uncharacterized protein LOC21394043 [Morus notabilis] >XP_024031031.1 uncharacte... [more]
EXC30509.12.8e-0440.38hypothetical protein L484_010758 [Morus notabilis][more]
KAA0067175.18.1e-0434.62protein Ycf2-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
W9SF501.4e-0440.38DUF1985 domain-containing protein OS=Morus notabilis OX=981085 GN=L484_010758 PE... [more]
A0A5A7VN683.9e-0434.62Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002... [more]
A0A5A7TF745.1e-0436.54Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001... [more]
A0A5D3DR128.8e-0432.69Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G0... [more]
A0A5D3E1W78.8e-0432.69Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023787.1MS023787.1mRNA