MS023784 (gene) Bitter gourd (TR) v1

Overview
NameMS023784
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold207: 346522 .. 346788 (-)
RNA-Seq ExpressionMS023784
SyntenyMS023784
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGGCTTGACTTGTGGTTAGGTGATTCGGTTTTTAAAGATCGTTTTCCTCATGCGGTGGCAAAGTTTCCCTTCAGTTCTGTTTTTGATAATTGGGATGGGCATTCTTCTTCTTGGATCGTTGAAACTAGAAGAAACCCCAAAGAATCAGAGGCTGAGGATTATTTACCCATTCTGTCCACTTTGAACTTGGTGTCTTTTTCAACAGAGGATGATAAACTACTGTGGAATCTTGAAGCGTCAAAGGTTTTTTCAGTAAAATCTTTA

mRNA sequence

TTTTGGCTTGACTTGTGGTTAGGTGATTCGGTTTTTAAAGATCGTTTTCCTCATGCGGTGGCAAAGTTTCCCTTCAGTTCTGTTTTTGATAATTGGGATGGGCATTCTTCTTCTTGGATCGTTGAAACTAGAAGAAACCCCAAAGAATCAGAGGCTGAGGATTATTTACCCATTCTGTCCACTTTGAACTTGGTGTCTTTTTCAACAGAGGATGATAAACTACTGTGGAATCTTGAAGCGTCAAAGGTTTTTTCAGTAAAATCTTTA

Coding sequence (CDS)

TTTTGGCTTGACTTGTGGTTAGGTGATTCGGTTTTTAAAGATCGTTTTCCTCATGCGGTGGCAAAGTTTCCCTTCAGTTCTGTTTTTGATAATTGGGATGGGCATTCTTCTTCTTGGATCGTTGAAACTAGAAGAAACCCCAAAGAATCAGAGGCTGAGGATTATTTACCCATTCTGTCCACTTTGAACTTGGTGTCTTTTTCAACAGAGGATGATAAACTACTGTGGAATCTTGAAGCGTCAAAGGTTTTTTCAGTAAAATCTTTA

Protein sequence

FWLDLWLGDSVFKDRFPHAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPILSTLNLVSFSTEDDKLLWNLEASKVFSVKSL
Homology
BLAST of MS023784 vs. NCBI nr
Match: XP_022155195.1 (uncharacterized protein LOC111022333 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPI 60
           FW   W+ +   KDRF   + ++  P  SV + WD  + SW + TRR  K+ E E++  +
Sbjct: 36  FWTHEWIENQPLKDRFSKIYQISTNPSGSVVEFWDAQTLSWRISTRRALKDDEIEEFSVL 95

Query: 61  LSTLNLVSFSTEDDKLLWNLEASKVFSVKSL 90
           L  L+  S S E D+ LW+LE S +FSV S+
Sbjct: 96  LYLLHSHSPSNELDRRLWSLEPSGMFSVASI 126

BLAST of MS023784 vs. NCBI nr
Match: RVW60989.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFPHAV-----AKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDY 60
           FW DLW GD + KD++P           P SS+F +     SSW    RRN  +SE ED 
Sbjct: 250 FWEDLWWGDQILKDQYPRLFRVVMDKNIPISSIFGS--SRPSSWNFNFRRNLTDSEIEDL 309

Query: 61  LPILSTLNLVSFSTE-DDKLLWNLEASKVFSVKS 89
             ++ +L+ ++ ST   +   W+L +S +F+VKS
Sbjct: 310 KCLMHSLDCMNLSTSASNARSWSLCSSSLFTVKS 341

BLAST of MS023784 vs. NCBI nr
Match: RVW49903.1 (hypothetical protein CK203_093837 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYL 60
           FW D W+G+S  KD FP  + +A    + V D W   G    W V+ RR+ ++ E E+  
Sbjct: 30  FWWDFWVGESKLKDLFPFLYRIATHNSAVVADLWGRQGGGGGWEVQFRRSFQDWELEEVN 89

Query: 61  PILSTLNLVSFSTEDDKLLWNLEASKVFSVKS 89
            +L+ ++ V     +D L+W +E    FSVKS
Sbjct: 90  HLLNHISAVKVQEGEDSLVWKIEKKGKFSVKS 121

BLAST of MS023784 vs. NCBI nr
Match: MCH99327.1 (ribonuclease H protein [Trifolium medium])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFPH--AVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYL 60
           FW D W+GD+  KDRFP   +++     SV   W  DG S  W +E RR     E+  + 
Sbjct: 64  FWKDKWVGDTTLKDRFPRLFSISTQKDVSVASLWNRDG-SERWNLEWRRRLFVWESTLWE 123

Query: 61  PILSTLNLVSFSTEDDKLLWNLEASKVFSVKS 89
            ++  +N V+ S E+DK  W L+ + VFSVKS
Sbjct: 124 ELVLIINSVTLSCEEDKWEWKLDKNGVFSVKS 154

BLAST of MS023784 vs. NCBI nr
Match: CAN78771.1 (hypothetical protein VITISV_013622 [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-05
Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW---DGHSSSWIVETRRNPKESEAEDY 60
           FW D+W+GDS  K  FP    +A +  ++V D W    G    W V  RR+ ++ E E+ 
Sbjct: 448 FWWDIWVGDSKLKGLFPMLFRIATYNSATVADLWGRQGGGDGCWEVHFRRSFQDWELEEV 507

Query: 61  LPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS 89
              L  +  V    E+D L+W +E    F+VKS
Sbjct: 508 TXFLEHIFAVKIQEEEDSLVWKIERRGKFNVKS 540

BLAST of MS023784 vs. ExPASy TrEMBL
Match: A0A6J1DLR8 (uncharacterized protein LOC111022333 OS=Momordica charantia OX=3673 GN=LOC111022333 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.9e-08
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPI 60
           FW   W+ +   KDRF   + ++  P  SV + WD  + SW + TRR  K+ E E++  +
Sbjct: 36  FWTHEWIENQPLKDRFSKIYQISTNPSGSVVEFWDAQTLSWRISTRRALKDDEIEEFSVL 95

Query: 61  LSTLNLVSFSTEDDKLLWNLEASKVFSVKSL 90
           L  L+  S S E D+ LW+LE S +FSV S+
Sbjct: 96  LYLLHSHSPSNELDRRLWSLEPSGMFSVASI 126

BLAST of MS023784 vs. ExPASy TrEMBL
Match: A0A438EQ96 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_093837 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYL 60
           FW D W+G+S  KD FP  + +A    + V D W   G    W V+ RR+ ++ E E+  
Sbjct: 30  FWWDFWVGESKLKDLFPFLYRIATHNSAVVADLWGRQGGGGGWEVQFRRSFQDWELEEVN 89

Query: 61  PILSTLNLVSFSTEDDKLLWNLEASKVFSVKS 89
            +L+ ++ V     +D L+W +E    FSVKS
Sbjct: 90  HLLNHISAVKVQEGEDSLVWKIEKKGKFSVKS 121

BLAST of MS023784 vs. ExPASy TrEMBL
Match: A0A392NHI5 (Ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFPH--AVAKFPFSSVFDNW--DGHSSSWIVETRRNPKESEAEDYL 60
           FW D W+GD+  KDRFP   +++     SV   W  DG S  W +E RR     E+  + 
Sbjct: 64  FWKDKWVGDTTLKDRFPRLFSISTQKDVSVASLWNRDG-SERWNLEWRRRLFVWESTLWE 123

Query: 61  PILSTLNLVSFSTEDDKLLWNLEASKVFSVKS 89
            ++  +N V+ S E+DK  W L+ + VFSVKS
Sbjct: 124 ELVLIINSVTLSCEEDKWEWKLDKNGVFSVKS 154

BLAST of MS023784 vs. ExPASy TrEMBL
Match: A5B8Z5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013622 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 32/93 (34.41%), Postives = 47/93 (50.54%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNW---DGHSSSWIVETRRNPKESEAEDY 60
           FW D+W+GDS  K  FP    +A +  ++V D W    G    W V  RR+ ++ E E+ 
Sbjct: 448 FWWDIWVGDSKLKGLFPMLFRIATYNSATVADLWGRQGGGDGCWEVHFRRSFQDWELEEV 507

Query: 61  LPILSTLNLVSFSTEDDKLLWNLEASKVFSVKS 89
              L  +  V    E+D L+W +E    F+VKS
Sbjct: 508 TXFLEHIFAVKIQEEEDSLVWKIERRGKFNVKS 540

BLAST of MS023784 vs. ExPASy TrEMBL
Match: Q2R9U7 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os11g07520 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 1   FWLDLWLGDSVFKDRFP--HAVAKFPFSSVFDNWDGHSSSWIVETRRNPKESEAEDYLPI 60
           FW D+WLGD+  K +FP  +++   P  +V   W   S  W ++ RR+    E  ++  +
Sbjct: 652 FWDDVWLGDTPLKIKFPYIYSIVADPGKTVSQLWS--SDGWRIDLRRSLGAEELVEWEQL 711

Query: 61  LSTLNLVSFSTEDDKLLWNLEASKVFSVKSL 90
           L+ L  V  ST+ D++ W L  S  FS KSL
Sbjct: 712 LADLANVHLSTDRDRMRWKLTKSGQFSTKSL 740

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155195.11.2e-0738.46uncharacterized protein LOC111022333 [Momordica charantia][more]
RVW60989.11.1e-0536.17putative ribonuclease H protein [Vitis vinifera][more]
RVW49903.12.5e-0534.78hypothetical protein CK203_093837 [Vitis vinifera][more]
MCH99327.13.3e-0539.13ribonuclease H protein [Trifolium medium][more]
CAN78771.14.3e-0534.41hypothetical protein VITISV_013622 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DLR85.9e-0838.46uncharacterized protein LOC111022333 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A438EQ961.2e-0534.78zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_093837 PE=4... [more]
A0A392NHI51.6e-0539.13Ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A5B8Z52.1e-0534.41Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013622 PE=4 SV=1[more]
Q2R9U72.1e-0535.16Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023784.1MS023784.1mRNA