MS023729 (gene) Bitter gourd (TR) v1

Overview
NameMS023729
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHexokinase-1 isoform X1
Locationscaffold570: 590759 .. 591659 (+)
RNA-Seq ExpressionMS023729
SyntenyMS023729
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAAACTTTGCCACAGCCCTGATCCACTGGGCTTCTTTGGAAATGGAACGGAAAGTTTCGAAGCCGGGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGAGCAAGCGGCGGAAAACCGATCAAACACCGTCTCGCCGGTAATTCTTGCCTCTCCTCTACGGCCACCGCCGTCGGATAAATGCATACTGTCTTTTCTGTTCGCTAAACGAAACTTTTCAGTTTATTTTTCTTTGCCATGAGTTGTTCTTGATGAAGCACTACGGATGTGAGGGTTAAAAATCTAAAAGTTTGAGACTACGACGTAGATGTTAGTTACTGCCGATGGTTTCGTTGGCAATTGCAGGCATTTGTATTGAGTTTGGAGGATTGAATGAAATTCTCGATCAAGAGATTTTAATAGTACGTAGTTTTGATTTTCTATTTTTGGATAATGGATAATAATCTGGAATTCTGGATTGAATCGTACCTTCGTAATTGACCTTTTCAACTATGAAAGGAAAGATCAAAACAACAGCGGACTTTTGTATTCGCTGCTTTAATTTTGAGTTAAGTTTATTCGAAAAACCTGTCGATTGCAGAACTTTATCTTCAGCTGCTGTAGAGGGAGAGAGAGTTTCAGCATCAACGAAAGGCTCGACTGTGAGGATATCTTTTCCTTGGTTTTGCTTTCCTTATAAACTGCCATGGTTATTTATCAGACATAAGATTTCTTATGAAAATTTTGGATTCGCACAGTTTCCTGTTGCTACTGGAAGTGAATTCAGGATTCAACAGGCTAAGAGTTTTGCTGTGGCACAGGCCAAACAAGATGGTTGCACTGGTAATTTTAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTGCCTGTTATTCCTTCTCCCGCAGAATTCGTTGAA

mRNA sequence

TTAAAACTTTGCCACAGCCCTGATCCACTGGGCTTCTTTGGAAATGGAACGTTTCGAAGCCGGGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGAGCAAGCGGCGGAAAACCGATCAAACACCGTCTCGCCGGTAATTCTTGCCTCTCCTCTACGGCCACCGCCTTAAGTTTATTCGAAAAACCTGTCGATTGCAGAACTTTATCTTCAGCTGCTGTAGAGGGAGAGAGAGTTTCAGCATCAACGAAAGGCTCGACTTTTCCTGTTGCTACTGGAAGTGAATTCAGGATTCAACAGGCTAAGAGTTTTGCTGTGGCACAGGCCAAACAAGATGGTTGCACTGGTAATTTTAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTGCCTGTTATTCCTTCTCCCGCAGAATTCGTTGAA

Coding sequence (CDS)

TTAAAACTTTGCCACAGCCCTGATCCACTGGGCTTCTTTGGAAATGGAACGTTTCGAAGCCGGGAAACGACCGGGAAATTATGGCGCCTTCGTCTCAGAGCAAGCGGCGGAAAACCGATCAAACACCGTCTCGCCGGTAATTCTTGCCTCTCCTCTACGGCCACCGCCTTAAGTTTATTCGAAAAACCTGTCGATTGCAGAACTTTATCTTCAGCTGCTGTAGAGGGAGAGAGAGTTTCAGCATCAACGAAAGGCTCGACTTTTCCTGTTGCTACTGGAAGTGAATTCAGGATTCAACAGGCTAAGAGTTTTGCTGTGGCACAGGCCAAACAAGATGGTTGCACTGGTAATTTTAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTGCCTGTTATTCCTTCTCCCGCAGAATTCGTTGAA

Protein sequence

LKLCHSPDPLGFFGNGTFRSRETTGKLWRLRLRASGGKPIKHRLAGNSCLSSTATALSLFEKPVDCRTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFGNFLLPVIPSPAEFVE
Homology
BLAST of MS023729 vs. NCBI nr
Match: XP_022154669.1 (uncharacterized protein LOC111021873 isoform X1 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-31
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 126
           RTLSSAAVE ERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG
Sbjct: 33  RTLSSAAVERERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 92

Query: 127 NFLLPVIPSPAEFVE 142
           NFLLPVIPSPAEFVE
Sbjct: 93  NFLLPVIPSPAEFVE 107

BLAST of MS023729 vs. NCBI nr
Match: KGN60575.1 (hypothetical protein Csa_019185 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 6.6e-24
Identity = 77/147 (52.38%), Postives = 89/147 (60.54%), Query Frame = 0

Query: 2   KLCHSPDPLGFFGNGTFRSRETTGKLWRLRLRASGGKPIKHRLAGNSCLSSTATALSLFE 61
           KL  SP PLG   NGT  S          +   + G  +  + A N   SS A A+   E
Sbjct: 14  KLRRSPHPLGLLRNGTESSDAA-------KRPGNYGAFVSDQAAENRS-SSVAPAIEETE 73

Query: 62  KPVD-------CRTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGC 121
              +        R+ SSAAVE   V ASTKGSTFPVA+GSEFR+ Q KS A+A+AKQDGC
Sbjct: 74  MNFNNLQSLRSLRSSSSAAVERHGVLASTKGSTFPVASGSEFRMLQDKSSAIAEAKQDGC 133

Query: 122 TGNFKILDSPFGNFLLPVIPSPAEFVE 142
           TGNFK+LDSPFGNFLLPVIPS  EF E
Sbjct: 134 TGNFKVLDSPFGNFLLPVIPSSTEFFE 152

BLAST of MS023729 vs. NCBI nr
Match: TYK10748.1 (hexokinase-1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 126
           R+LSSAA+E   VSASTKGSTFPVA+GSEFRI Q KS A+A+AKQDGCTGNFK+LDSPFG
Sbjct: 33  RSLSSAAIERHGVSASTKGSTFPVASGSEFRILQDKSSAIAEAKQDGCTGNFKVLDSPFG 92

Query: 127 NFLLPVIPSPAEFVE 142
           NFLLPVIPS  EF E
Sbjct: 93  NFLLPVIPSSTEFSE 107

BLAST of MS023729 vs. NCBI nr
Match: XP_004141024.1 (uncharacterized protein LOC101218541 isoform X1 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 61  EKPVDCRTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKI 120
           + P   R+ SSAAVE   V ASTKGSTFPVA+GSEFR+ Q KS A+A+AKQDGCTGNFK+
Sbjct: 27  DHPPSRRSSSSAAVERHGVLASTKGSTFPVASGSEFRMLQDKSSAIAEAKQDGCTGNFKV 86

Query: 121 LDSPFGNFLLPVIPSPAEFVE 142
           LDSPFGNFLLPVIPS  EF E
Sbjct: 87  LDSPFGNFLLPVIPSSTEFFE 107

BLAST of MS023729 vs. NCBI nr
Match: KAG7030460.1 (hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 8.9e-21
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 126
           R LSS  VE + +S STKGS  PV++GSEFRI Q KS AVA+AKQD CTGNFKILDSPFG
Sbjct: 33  RILSSVGVERQGISVSTKGSICPVSSGSEFRILQDKSSAVAEAKQDCCTGNFKILDSPFG 92

Query: 127 NFLLPVIPSPAEFVE 142
           NFLLPVIPSPAE VE
Sbjct: 93  NFLLPVIPSPAELVE 107

BLAST of MS023729 vs. ExPASy TrEMBL
Match: A0A6J1DMU3 (uncharacterized protein LOC111021873 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021873 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 126
           RTLSSAAVE ERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG
Sbjct: 33  RTLSSAAVERERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 92

Query: 127 NFLLPVIPSPAEFVE 142
           NFLLPVIPSPAEFVE
Sbjct: 93  NFLLPVIPSPAEFVE 107

BLAST of MS023729 vs. ExPASy TrEMBL
Match: A0A0A0LEY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000820 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-24
Identity = 77/147 (52.38%), Postives = 89/147 (60.54%), Query Frame = 0

Query: 2   KLCHSPDPLGFFGNGTFRSRETTGKLWRLRLRASGGKPIKHRLAGNSCLSSTATALSLFE 61
           KL  SP PLG   NGT  S          +   + G  +  + A N   SS A A+   E
Sbjct: 14  KLRRSPHPLGLLRNGTESSDAA-------KRPGNYGAFVSDQAAENRS-SSVAPAIEETE 73

Query: 62  KPVD-------CRTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGC 121
              +        R+ SSAAVE   V ASTKGSTFPVA+GSEFR+ Q KS A+A+AKQDGC
Sbjct: 74  MNFNNLQSLRSLRSSSSAAVERHGVLASTKGSTFPVASGSEFRMLQDKSSAIAEAKQDGC 133

Query: 122 TGNFKILDSPFGNFLLPVIPSPAEFVE 142
           TGNFK+LDSPFGNFLLPVIPS  EF E
Sbjct: 134 TGNFKVLDSPFGNFLLPVIPSSTEFFE 152

BLAST of MS023729 vs. ExPASy TrEMBL
Match: A0A5D3CHN8 (Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00610 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKILDSPFG 126
           R+LSSAA+E   VSASTKGSTFPVA+GSEFRI Q KS A+A+AKQDGCTGNFK+LDSPFG
Sbjct: 33  RSLSSAAIERHGVSASTKGSTFPVASGSEFRILQDKSSAIAEAKQDGCTGNFKVLDSPFG 92

Query: 127 NFLLPVIPSPAEFVE 142
           NFLLPVIPS  EF E
Sbjct: 93  NFLLPVIPSSTEFSE 107

BLAST of MS023729 vs. ExPASy TrEMBL
Match: A0A6J1DKA0 (uncharacterized protein LOC111021873 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021873 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-15
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCT 116
           RTLSSAAVE ERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCT
Sbjct: 33  RTLSSAAVERERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCT 81

BLAST of MS023729 vs. ExPASy TrEMBL
Match: A0A5A7V2P5 (Phosphotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00850 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 43/54 (79.63%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 67  RTLSSAAVEGERVSASTKGSTFPVATGSEFRIQQAKSFAVAQAKQDGCTGNFKI 121
           R+LSSAA+E  RVSASTKGSTFPVA+GSEFRI Q KS A+A+AKQDGCTGNFK+
Sbjct: 33  RSLSSAAIERHRVSASTKGSTFPVASGSEFRILQDKSSAIAEAKQDGCTGNFKM 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154669.14.3e-3198.67uncharacterized protein LOC111021873 isoform X1 [Momordica charantia][more]
KGN60575.16.6e-2452.38hypothetical protein Csa_019185 [Cucumis sativus][more]
TYK10748.11.5e-2380.00hexokinase-1 isoform X1 [Cucumis melo var. makuwa][more]
XP_004141024.12.1e-2272.84uncharacterized protein LOC101218541 isoform X1 [Cucumis sativus][more]
KAG7030460.18.9e-2176.00hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DMU32.1e-3198.67uncharacterized protein LOC111021873 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A0A0LEY33.2e-2452.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000820 PE=4 SV=1[more]
A0A5D3CHN87.1e-2480.00Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DKA04.6e-1597.96uncharacterized protein LOC111021873 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A5A7V2P51.9e-1379.63Phosphotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48205FAMILY NOT NAMEDcoord: 62..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023729.1MS023729.1mRNA