MS023680 (gene) Bitter gourd (TR) v1

Overview


Name	MS023680
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II subunit X
Location	scaffold570: 211434 .. 211832 (-)
RNA-Seq Expression	MS023680
Synteny	MS023680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTTCCGCAGTCTCGGTGGCGATGCCGATTACTAAGGCGAGCGCGAGGAGCTCCCAAGGCTTTGGCAGGGCAAGGGCGTTGCCTCTGAGGCCTTCCAGTTCCAGCAACCCAACTCCAACTCCAACTCCAACTCCAACTGCTGCGCCTGCATCGAACTCCGCCGCCAAGTTCCAAGTGCGGGCTTCCTTGAAGGACAAGGCAGTTGCTGGACTCGCTGCCACTGCGCTCACGGCCTCCCTGCTTATTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGCGTCACTCCTTCTCTCCAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTGGTCACTGCCATCATCGGTGCAGTTTTCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACC

mRNA sequence

ATGGCTTCCACTTCCGCAGTCTCGGTGGCGATGCCGATTACTAAGGCGAGCGCGAGGAGCTCCCAAGGCTTTGGCAGGGCAAGGGCGTTGCCTCTGAGGCCTTCCAGTTCCAGCAACCCAACTCCAACTCCAACTCCAACTCCAACTGCTGCGCCTGCATCGAACTCCGCCGCCAAGTTCCAAGTGCGGGCTTCCTTGAAGGACAAGGCAGTTGCTGGACTCGCTGCCACTGCGCTCACGGCCTCCCTGCTTATTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGCGTCACTCCTTCTCTCCAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTGGTCACTGCCATCATCGGTGCAGTTTTCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACC

Coding sequence (CDS)

ATGGCTTCCACTTCCGCAGTCTCGGTGGCGATGCCGATTACTAAGGCGAGCGCGAGGAGCTCCCAAGGCTTTGGCAGGGCAAGGGCGTTGCCTCTGAGGCCTTCCAGTTCCAGCAACCCAACTCCAACTCCAACTCCAACTCCAACTGCTGCGCCTGCATCGAACTCCGCCGCCAAGTTCCAAGTGCGGGCTTCCTTGAAGGACAAGGCAGTTGCTGGACTCGCTGCCACTGCGCTCACGGCCTCCCTGCTTATTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGCGTCACTCCTTCTCTCCAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTGGTCACTGCCATCATCGGTGCAGTTTTCGGCGTCGCCAATTTCGATCCCGTCAAGCGGACC

Protein sequence

MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGAVFGVANFDPVKRT

Homology

[Close]

BLAST of MS023680 vs. NCBI nr
Match: XP_022154703.1 (uncharacterized protein LOC111021896 [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-53
Identity = 129/133 (96.99%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKF 60
           MASTSAVSVAMPITKASARSSQ FGRARALPLRPSSSSN  PTPTPTPTAAPASNSAAKF
Sbjct: 1   MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSN--PTPTPTPTAAPASNSAAKF 60

Query: 61  QVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA 120
           QVRASLKDKAVAGLA TALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA
Sbjct: 61  QVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA 120

Query: 121 VFGVANFDPVKRT 134
           VFGVANFDPVKRT
Sbjct: 121 VFGVANFDPVKRT 131

[Close]

BLAST of MS023680 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-33
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS 
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAF--AKALPLRPSNK----------PTA--SSNSR 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVVTAI
Sbjct: 61  AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GA+ GV+NFDPVKRT
Sbjct: 121 LGAIIGVSNFDPVKRT 122

[Close]

BLAST of MS023680 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 7.3e-33
Identity = 95/136 (69.85%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSA+S+AMPIT A+   AR ++ F  A+ LPLRPS+  N             +SNS+
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAF--AKPLPLRPSNKPN------------ASSNSS 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVVTAI
Sbjct: 61  AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GAV GVANFDPVKRT
Sbjct: 121 LGAVIGVANFDPVKRT 122

[Close]

BLAST of MS023680 vs. NCBI nr
Match: XP_022999231.1 (uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharacterized protein LOC111786846 [Cucurbita pepo subsp. pepo] >XP_023546323.1 uncharacterized protein LOC111805446 [Cucurbita pepo subsp. pepo] >XP_023546324.1 uncharacterized protein LOC111805448 [Cucurbita pepo subsp. pepo] >KAG6599523.1 hypothetical protein SDJN03_09301, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 7.3e-33
Identity = 97/136 (71.32%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS 
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAF--AKALPLRPSNK----------PTA--SSNSR 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVV AI
Sbjct: 61  AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GA+ GV+NFDPVKRT
Sbjct: 121 LGAIIGVSNFDPVKRT 122

[Close]

BLAST of MS023680 vs. NCBI nr
Match: KAG7030501.1 (hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 4.7e-32
Identity = 95/136 (69.85%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSAVS+AMPIT A+   AR++  F  A+ALPLRPS+           PTA  +SNS 
Sbjct: 1   MASTSAVSMAMPITNATQKRARNTDAF--AKALPLRPSNK----------PTA--SSNSR 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGL ATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVV AI
Sbjct: 61  AKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GA+ GV+NFDPVKRT
Sbjct: 121 LGAIIGVSNFDPVKRT 122

[Close]

BLAST of MS023680 vs. ExPASy TrEMBL
Match: A0A6J1DL14 (uncharacterized protein LOC111021896 OS=Momordica charantia OX=3673 GN=LOC111021896 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 129/133 (96.99%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKF 60
           MASTSAVSVAMPITKASARSSQ FGRARALPLRPSSSSN  PTPTPTPTAAPASNSAAKF
Sbjct: 1   MASTSAVSVAMPITKASARSSQRFGRARALPLRPSSSSN--PTPTPTPTAAPASNSAAKF 60

Query: 61  QVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA 120
           QVRASLKDKAVAGLA TALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA
Sbjct: 61  QVRASLKDKAVAGLAVTALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA 120

Query: 121 VFGVANFDPVKRT 134
           VFGVANFDPVKRT
Sbjct: 121 VFGVANFDPVKRT 131

[Close]

BLAST of MS023680 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.3e-34
Identity = 98/136 (72.06%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS 
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAF--AKALPLRPSNK----------PTA--SSNSR 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVVTAI
Sbjct: 61  AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GA+ GV+NFDPVKRT
Sbjct: 121 LGAIIGVSNFDPVKRT 122

[Close]

BLAST of MS023680 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.5e-33
Identity = 97/136 (71.32%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSAVS+AMPIT A+   ARS+  F  A+ALPLRPS+           PTA  +SNS 
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAF--AKALPLRPSNK----------PTA--SSNSR 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVV AI
Sbjct: 61  AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GA+ GV+NFDPVKRT
Sbjct: 121 LGAIIGVSNFDPVKRT 122

[Close]

BLAST of MS023680 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.1e-32
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSA+S+AMPIT A+   AR ++ F  A+ LPLRPS+              + +S+S+
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAF--AKPLPLRPSNK------------PSGSSSSS 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRASLK+KAVAGLAATALTAS+++PEVAEAAGPGV+PSL+NFLLSIAAGGVVVTAI
Sbjct: 61  AKFQVRASLKEKAVAGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GAV GVANFDPVKRT
Sbjct: 121 LGAVIGVANFDPVKRT 122

[Close]

BLAST of MS023680 vs. ExPASy TrEMBL
Match: A0A6J1FHW0 (uncharacterized protein LOC111444282 OS=Cucurbita moschata OX=3662 GN=LOC111444282 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 93/136 (68.38%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKAS---ARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSA 60
           MASTSAVS+AMPIT A+    RS++ F  A+ALPLRPS+           P AA + +S+
Sbjct: 1   MASTSAVSMAMPITNATQKRVRSTEAF--AKALPLRPSNK----------PIAA-SKSSS 60

Query: 61  AKFQVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAI 120
           AKFQVRAS+K+KA+AGLAATALTAS+++PEVAEAAG GVTPSL+NFLLSIAAGGVVVTAI
Sbjct: 61  AKFQVRASVKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAI 120

Query: 121 IGAVFGVANFDPVKRT 134
           +GA+ GV+NFDPVKRT
Sbjct: 121 LGAIIGVSNFDPVKRT 123

[Close]

BLAST of MS023680 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-22
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MASTSAVSVAMPITKASARSSQGFGRARALPLRPSSSSNPTPTPTPTPTAAPASNSAAKF 60
           MASTSA+S+  P+ +   RSS      + LPL+PS +   T               A + 
Sbjct: 1   MASTSAMSLVTPLNQ--TRSSPFL---KPLPLKPSKALVAT------------GGRAQRL 60

Query: 61  QVRASLKDKAVAGLAATALTASLLIPEVAEAAGPGVTPSLQNFLLSIAAGGVVVTAIIGA 120
           QV+A   DKA+ G++A ALTAS++IPE+AEAAG G++PSL+NFLLSIA+GG+V+T IIG 
Sbjct: 61  QVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGV 116

Query: 121 VFGVANFDPVKRT 134
           V GV+NFDPVKRT
Sbjct: 121 VVGVSNFDPVKRT 116

The following BLAST results are available for this feature:

BLAST of MS023680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154703.1	4.9e-53	96.99	uncharacterized protein LOC111021896 [Momordica charantia]	[more]
XP_022946746.1	1.9e-33	72.06	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]
XP_038890010.1	7.3e-33	69.85	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
XP_022999231.1	7.3e-33	71.32	uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharac...	[more]
KAG7030501.1	4.7e-32	69.85	hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS023680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL14	2.4e-53	96.99	uncharacterized protein LOC111021896 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1G4H3	9.3e-34	72.06	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A6J1KCH8	3.5e-33	71.32	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]
A0A5A7V6L0	5.1e-32	68.38	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FHW0	1.5e-31	68.38	uncharacterized protein LOC111444282 OS=Cucurbita moschata OX=3662 GN=LOC1114442...	[more]

BLAST of MS023680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	3.6e-22	51.13	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 96..133 e-value: 3.8E-16 score: 58.8
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 95..133 e-value: 3.3E-10 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..56
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..133
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023680.1	MS023680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II