MS023675 (gene) Bitter gourd (TR) v1

Overview


Name	MS023675
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	UDENN domain-containing protein
Location	scaffold570: 188896 .. 189240 (+)
RNA-Seq Expression	MS023675
Synteny	MS023675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAGAGAAGTACAGTCAAAGTTAACAAATGCCATTCTGGTTGATGTTAACAACAACCAGGTCTCTATATTTTCTATTTTTTTGAACATCAATTCTTCTTTATATGATTTTGTGTTGATTATCCACTTGCGGTGAATATGTATCTGATTTGTCCCACTATTTGAAATGATAGGTCAAGGCCCTAACAGTGCCTCAACTACCTAAATAAAGGAGTTATTCTCATCATTAAGATTGTATCAAGCAAAGCTAGTCGGAGAAAGTTATTTGGGAGGAAAGAGGCCTGAATGCACTGATGTGCAGGTTTGTTCTTTCTCCTTTTATTTTTCTTTTTATCTGATATACTTA

mRNA sequence

ACTAGAGAAGTACAGTCAAAGTTAACAAATGCCATTCTGGTTGATGTTAACAACAACCAGGTCAAGGCCCTAACAGTGCCTCAACTACCTAAAAAGGAGTTATTCTCATCATTAAGATTGTATCAAGCAAAGCTAGTCGGAGAAAGTTATTTGGGAGGAAAGAGGCCTGAATGCACTGATGTGCAGGTTTGTTCTTTCTCCTTTTATTTTTCTTTTTATCTGATATACTTA

Coding sequence (CDS)

ACTAGAGAAGTACAGTCAAAGTTAACAAATGCCATTCTGGTTGATGTTAACAACAACCAGGTCAAGGCCCTAACAGTGCCTCAACTACCTAAAAAGGAGTTATTCTCATCATTAAGATTGTATCAAGCAAAGCTAGTCGGAGAAAGTTATTTGGGAGGAAAGAGGCCTGAATGCACTGATGTGCAGGTTTGTTCTTTCTCCTTTTATTTTTCTTTTTATCTGATATACTTA

Protein sequence

TREVQSKLTNAILVDVNNNQVKALTVPQLPKKELFSSLRLYQAKLVGESYLGGKRPECTDVQVCSFSFYFSFYLIYL

Homology

[Close]

BLAST of MS023675 vs. NCBI nr
Match: XP_022965519.1 (uncharacterized protein LOC111465399 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKALT+P+LPK KELF+SLR Y A+LVGESYLG KRP  E
Sbjct: 586 TSEVQSKLTNAILVDVNKNQVKALTIPELPKQKELFASLRPYHAELVGESYLGRKRPVHE 645

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 646 CTDVQVEAAKGFLKVLRLYL 665

[Close]

BLAST of MS023675 vs. NCBI nr
Match: XP_023546917.1 (uncharacterized protein LOC111805877 [Cucurbita pepo subsp. pepo] >XP_023546918.1 uncharacterized protein LOC111805877 [Cucurbita pepo subsp. pepo] >XP_023546919.1 uncharacterized protein LOC111805877 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 4.3e-17
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKA T+PQLPK KELFSSLR Y A LVGESYLG KRP  E
Sbjct: 656 TSEVQSKLTNAILVDVNKNQVKASTIPQLPKQKELFSSLRPYHADLVGESYLGRKRPVLE 715

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 716 CTDVQVEAARGFLKVLRLYL 735

[Close]

BLAST of MS023675 vs. NCBI nr
Match: XP_022154675.1 (uncharacterized protein LOC111021878 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 4.3e-17
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKA TVPQLPK +ELFSSLR Y A+LVGESYLG KRP  E
Sbjct: 646 TSEVQSKLTNAILVDVNKNQVKAPTVPQLPKQRELFSSLRPYHAELVGESYLGRKRPVHE 705

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 706 CTDVQVEASKGFLKVLRLYL 725

[Close]

BLAST of MS023675 vs. NCBI nr
Match: KAG6599534.1 (O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 5.6e-17
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1    TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
            T EVQSKLTNAILVDVN NQVKA T+PQLPK KELFSSLR Y A LVGESYLG KRP  E
Sbjct: 1170 TSEVQSKLTNAILVDVNKNQVKAPTIPQLPKQKELFSSLRPYHADLVGESYLGRKRPVLE 1229

Query: 61   CTDVQVCSFSFYFSFYLIYL 78
            CTDVQV +   +     +YL
Sbjct: 1230 CTDVQVEAARGFLKVLRLYL 1249

[Close]

BLAST of MS023675 vs. NCBI nr
Match: XP_022946716.1 (uncharacterized protein LOC111450708 [Cucurbita moschata] >XP_022946718.1 uncharacterized protein LOC111450708 [Cucurbita moschata] >XP_022946719.1 uncharacterized protein LOC111450708 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 5.6e-17
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKA T+PQLPK KELFSSLR Y A LVGESYLG KRP  E
Sbjct: 656 TSEVQSKLTNAILVDVNKNQVKAPTIPQLPKQKELFSSLRPYHADLVGESYLGRKRPVLE 715

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 716 CTDVQVEAARGFLKVLRLYL 735

[Close]

BLAST of MS023675 vs. ExPASy TrEMBL
Match: A0A6J1HR80 (uncharacterized protein LOC111465399 OS=Cucurbita maxima OX=3661 GN=LOC111465399 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.3e-18
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKALT+P+LPK KELF+SLR Y A+LVGESYLG KRP  E
Sbjct: 586 TSEVQSKLTNAILVDVNKNQVKALTIPELPKQKELFASLRPYHAELVGESYLGRKRPVHE 645

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 646 CTDVQVEAAKGFLKVLRLYL 665

[Close]

BLAST of MS023675 vs. ExPASy TrEMBL
Match: A0A6J1DKA5 (uncharacterized protein LOC111021878 OS=Momordica charantia OX=3673 GN=LOC111021878 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 57/80 (71.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKA TVPQLPK +ELFSSLR Y A+LVGESYLG KRP  E
Sbjct: 646 TSEVQSKLTNAILVDVNKNQVKAPTVPQLPKQRELFSSLRPYHAELVGESYLGRKRPVHE 705

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 706 CTDVQVEASKGFLKVLRLYL 725

[Close]

BLAST of MS023675 vs. ExPASy TrEMBL
Match: A0A6J1G4N7 (uncharacterized protein LOC111450708 OS=Cucurbita moschata OX=3662 GN=LOC111450708 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-17
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNAILVDVN NQVKA T+PQLPK KELFSSLR Y A LVGESYLG KRP  E
Sbjct: 656 TSEVQSKLTNAILVDVNKNQVKAPTIPQLPKQKELFSSLRPYHADLVGESYLGRKRPVLE 715

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 716 CTDVQVEAARGFLKVLRLYL 735

[Close]

BLAST of MS023675 vs. ExPASy TrEMBL
Match: A0A5A7V3L8 (DENN domain-containing protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001230 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-17
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNA+LVDVN NQVKA T+PQLPK KELFSSLR Y A+LVGES+LG KRP  E
Sbjct: 651 TSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHE 710

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 711 CTDVQVEAAKGFLKVLRLYL 730

[Close]

BLAST of MS023675 vs. ExPASy TrEMBL
Match: A0A0A0LIL0 (UDENN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000160 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-17
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTNA+LVDVN NQVKA T+PQLPK KELFSSLR Y A+LVGES+LG KRP  E
Sbjct: 654 TSEVQSKLTNAVLVDVNKNQVKAPTIPQLPKQKELFSSLRPYHAELVGESFLGRKRPVHE 713

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +     +YL
Sbjct: 714 CTDVQVEAAKGFLKVLRLYL 733

[Close]

BLAST of MS023675 vs. TAIR 10
Match: AT5G35560.1 (DENN (AEX-3) domain-containing protein )

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1   TREVQSKLTNAILVDVNNNQVKALTVPQLPK-KELFSSLRLYQAKLVGESYLGGKRP--E 60
           T EVQSKLTN I+VD+  NQVK+ ++PQLP+ ++L+++L  Y +KLVGESYL  KRP  E
Sbjct: 621 TSEVQSKLTNVIVVDILKNQVKSPSMPQLPQYRDLYNALSPYHSKLVGESYLAKKRPVYE 680

Query: 61  CTDVQVCSFSFYFSFYLIYL 78
           CTDVQV +   +      YL
Sbjct: 681 CTDVQVDAAKGFMDVLRSYL 700

The following BLAST results are available for this feature:

BLAST of MS023675 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965519.1	1.9e-17	70.00	uncharacterized protein LOC111465399 [Cucurbita maxima]	[more]
XP_023546917.1	4.3e-17	71.25	uncharacterized protein LOC111805877 [Cucurbita pepo subsp. pepo] >XP_023546918....	[more]
XP_022154675.1	4.3e-17	71.25	uncharacterized protein LOC111021878 [Momordica charantia]	[more]
KAG6599534.1	5.6e-17	71.25	O-fucosyltransferase 35, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946716.1	5.6e-17	71.25	uncharacterized protein LOC111450708 [Cucurbita moschata] >XP_022946718.1 unchar...	[more]

BLAST of MS023675 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HR80	9.3e-18	70.00	uncharacterized protein LOC111465399 OS=Cucurbita maxima OX=3661 GN=LOC111465399...	[more]
A0A6J1DKA5	2.1e-17	71.25	uncharacterized protein LOC111021878 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1G4N7	2.7e-17	71.25	uncharacterized protein LOC111450708 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A5A7V3L8	4.6e-17	68.75	DENN domain-containing protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0LIL0	4.6e-17	68.75	UDENN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000160 PE=4 ...	[more]

BLAST of MS023675 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35560.1	1.6e-14	53.75	DENN (AEX-3) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15288:SF4	DENN (AEX-3) DOMAIN-CONTAINING PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR15288	SUPPRESSION OF TUMORIGENICITY 5 ST5	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023675.1	MS023675.1	mRNA