MS023608 (gene) Bitter gourd (TR) v1

Overview


Name	MS023608
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-binding protein 7
Location	scaffold155: 539718 .. 541582 (-)
RNA-Seq Expression	MS023608
Synteny	MS023608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTATTCTTTCGGGGGACTTTCACTTTCTGTAGGTAATTTGGATGATAGGGTAAGTGATAGGGTTCTGTATGACATTCTAATCCAAGCTGGGCGGTTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTATGCTTTTGCAGAATATGAAAGCGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCCGGTCTCGTGATTCTTCATAACCGGATCCTGAAGTTTGCAGTATGTCCTTATTATTTCTTTCTCAATGCAACTTCAGGGTTTCCTTTCCTTGTATCTTTGTTTTTTTCAAATGTATTATCAAATCTGTTTTCTAGCTATTTTTTTTAATATTTACTTCATGGTTCAGTATTTAGGTGATACACACATCTTCTCTAGTTTGACAACCATTGCATTTTGATCAATAACTCACTTTAGATAGTACTAGTCTATTAACACGTGTGTTGCATTTGAAATTTTTGTTTCATTTGACTTCATGGAAAAAGAAGATTTGAGAAATTTAATTAAATGTCAAAGATTAAAAAGTCTTAAGAGAATAGCATATGATTTGATTTATAATTAAAGTTTTTATGTACTAACTATATATTAATTAATGACGTTATCTTCGTAATAGAACTTGGTTCTCCTTCATATGCCTTATGTAGTATATAATTCATAACCTTTTTACAGTTTTAGCAATCACATTAAAATTATATCATTTTGTTCTTTATTCTTTACGAATCTAGTTTGCACTTAGAAGCAACCTTCTCATCATAATGAATTGATGGGAGGAAGGAAGATATATTCACGGATATGTCATTATTTATCATGTAATGGAAATTTAATCTAGTTTAGTTTATATCACCACACAATTTTAAATGACTTGGTTGGAAAGACAGAAGGCTTTCCAATTTTAGAGGATGAACACAAGCATTAAAAGATTATTGATAAACAAAAATAAATGGAAACTATAATTTATTCATCACCATGACTTTAAATGAGTTCGTTGCAAACCAAAGAACTTATCTAAATTTGGGAATGAAGGTAGATTTTAAAATGTTAATAGAAAACCAAAATAAGCTTAAATATATAATTGCATGTATTAAATTATATCTATCAGTTTTATAAAAGGTGATATGTTTTAATTCTGATTTGGACTAATTAGGAACAATATAAACAATGAAGGGGCACATTGAAATATGATGTTTCCTTTTCCATTTATATATTTAGTATAGTTAATTTCCTTTGATATATGATTCTTGGCTGTGCGGTCTCATACTTACAATTTTGTAATCAGATGATTGTGCAATCATCTTGAGTGTGGTACTTGGAAAGTTATCAAGTTATGGGAATGAGGCATGATTTCTTACTTCTTGCAAACAGGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTATCGCAATCAATTCATCATCAAATATATCTCATAAATTGAGATCGCAGTTTGTTCCGGGTTACTCTAGTGAAATATCTCAGTATTCCAATCGCTTGTCAACTTCATGCAGGTTTTCAGCGTACCCCGAGAACCATCTAGAAGGTGATTTTCCCTATTCTCCTCTGTTTTTGTATTTTCTTTGTTAGTTGTGCTATAAAATTGTGTATTTTTTCTTTCACGGGTTTTCCCACACTAGTTCAACAAATTCTTTTTTTTCTTTTATTCAGCGCCTCTTTACCCTGGTTTAGTTAACCAATCTAATGGGTATGGATCACATATGGGTAACTACAATAACGAATACAGTCAGCGATATTGTGGGACAACTTTGGATAGCTTTAACCATTCTAGACCACGCCGCTATGAAACGAGTAATCCAGTATACTATCCTCCTTACGAATTTTTGAAC

mRNA sequence

GCTTATTCTTTCGGGGGACTTTCACTTTCTGTAGGTAATTTGGATGATAGGGTAAGTGATAGGGTTCTGTATGACATTCTAATCCAAGCTGGGCGGTTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTATGCTTTTGCAGAATATGAAAGCGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCCGGTCTCGTGATTCTTCATAACCGGATCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTATCGCAATCAATTCATCATCAAATATATCTCATAAATTGAGATCGCAGTTTGTTCCGGGTTACTCTAGTGAAATATCTCAGTATTCCAATCGCTTGTCAACTTCATGCAGGTTTTCAGCGTACCCCGAGAACCATCTAGAAGCGCCTCTTTACCCTGGTTTAGTTAACCAATCTAATGGGTATGGATCACATATGGGTAACTACAATAACGAATACAGTCAGCGATATTGTGGGACAACTTTGGATAGCTTTAACCATTCTAGACCACGCCGCTATGAAACGAGTAATCCAGTATACTATCCTCCTTACGAATTTTTGAAC

Coding sequence (CDS)

GCTTATTCTTTCGGGGGACTTTCACTTTCTGTAGGTAATTTGGATGATAGGGTAAGTGATAGGGTTCTGTATGACATTCTAATCCAAGCTGGGCGGTTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCCAAGGGTTATGCTTTTGCAGAATATGAAAGCGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCCGGTCTCGTGATTCTTCATAACCGGATCCTGAAGTTTGCAGTATCTGGGCAAGACAAGCCTTCACCTAGTAGTATCGCAATCAATTCATCATCAAATATATCTCATAAATTGAGATCGCAGTTTGTTCCGGGTTACTCTAGTGAAATATCTCAGTATTCCAATCGCTTGTCAACTTCATGCAGGTTTTCAGCGTACCCCGAGAACCATCTAGAAGCGCCTCTTTACCCTGGTTTAGTTAACCAATCTAATGGGTATGGATCACATATGGGTAACTACAATAACGAATACAGTCAGCGATATTGTGGGACAACTTTGGATAGCTTTAACCATTCTAGACCACGCCGCTATGAAACGAGTAATCCAGTATACTATCCTCCTTACGAATTTTTGAAC

Protein sequence

AYSFGGLSLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNPVYYPPYEFLN

Homology

[Close]

BLAST of MS023608 vs. NCBI nr
Match: XP_022141807.1 (RNA-binding protein 7 [Momordica charantia])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 11  VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG 70
           VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG
Sbjct: 12  VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG 71

Query: 71  LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR 130
           LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR
Sbjct: 72  LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR 131

Query: 131 FSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNP 190
           FSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNP
Sbjct: 132 FSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNP 191

Query: 191 VYYPPYEFLN 201
           VYYPPYEFLN
Sbjct: 192 VYYPPYEFLN 201

[Close]

BLAST of MS023608 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-85
Identity = 159/195 (81.54%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 6   GLSLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAV 65
           G ++ +GNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESG+P+GYAFAEYE+EEI NYAV
Sbjct: 7   GCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYAV 66

Query: 66  KLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRL 125
           KLFSGLV LHNR LKFAVSGQDKPSPSS AI SSSNISHK RSQ VPGYS+EIS YSNRL
Sbjct: 67  KLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRL 126

Query: 126 STSCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRY 185
           S SCRFSAYPENHLEAP YPGLVNQSNGYGS+  ++NN+YSQRY GT LDSFNH + RR+
Sbjct: 127 SNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRH 186

Query: 186 ETSNPVYYPPYEFLN 201
           +TS PVYYPPYE LN
Sbjct: 187 DTSYPVYYPPYELLN 201

[Close]

BLAST of MS023608 vs. NCBI nr
Match: XP_022932504.1 (RNA-binding protein 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 158/195 (81.03%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 6   GLSLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAV 65
           G ++ +GNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESG+P+GYAFAEYE+EEI NYAV
Sbjct: 7   GCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYAV 66

Query: 66  KLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRL 125
           KLFSGLV LHNR LKFAVSGQDKPSPSS AI SSSNISHK RSQ VPGYS+EIS YSNRL
Sbjct: 67  KLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRL 126

Query: 126 STSCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRY 185
           S SCRFSAYPENH+EAP YPGLVNQSNGYGS+  ++NN+YSQRY GT LDSFNH + RR+
Sbjct: 127 SNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRH 186

Query: 186 ETSNPVYYPPYEFLN 201
           +TS PVYYPPYE LN
Sbjct: 187 DTSYPVYYPPYELLN 201

[Close]

BLAST of MS023608 vs. NCBI nr
Match: XP_023523852.1 (RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.6 bits (823), Expect = 4.7e-84
Identity = 157/195 (80.51%), Postives = 174/195 (89.23%), Query Frame = 0


Query: 6   GLSLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAV 65
           G ++ +GNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESG+P+GYAFAEYE+EEI NYAV
Sbjct: 7   GCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYAV 66

Query: 66  KLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRL 125
           KLFSGLV LHNR LKFAVSGQDKPSPSS AI SSSNISHK RSQ VPGYS+EIS YSNRL
Sbjct: 67  KLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRL 126

Query: 126 STSCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRY 185
           S SCRFSAY ENHLEAP YPGLVNQSNGYGS+  ++NN+YSQRY GT LDSFNH + RR+
Sbjct: 127 SNSCRFSAYRENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRH 186

Query: 186 ETSNPVYYPPYEFLN 201
           +TS PV+YPPYE LN
Sbjct: 187 DTSYPVHYPPYELLN 201

[Close]

BLAST of MS023608 vs. NCBI nr
Match: XP_022925403.1 (RNA-binding protein 7-like [Cucurbita moschata])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 149/193 (77.20%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 8   SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
           +L VGNLD+RVSD+VLYDILIQAGR+VDLHIPRDKESGKPKG+AFAEYE+E+I NYA+KL
Sbjct: 10  TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69

Query: 68  FSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLST 127
           FSGLV LHNR LKFAVSGQDKPSPS     SSSNISHK RS  V  YS+E SQYSNRLST
Sbjct: 70  FSGLVTLHNRTLKFAVSGQDKPSPS-----SSSNISHKSRSHIVSDYSNETSQYSNRLST 129

Query: 128 SCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYET 187
           SCRFSAYPENH EA L+PGLVNQ NGYG H+ NYNNE+SQRY  TTLDSF  ++ RR++T
Sbjct: 130 SCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQTKSRRHDT 189

Query: 188 SNPVYYPPYEFLN 201
           S PVYYPP+E LN
Sbjct: 190 SYPVYYPPHELLN 197

[Close]

BLAST of MS023608 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-10
Identity = 26/59 (44.07%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 11 VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFS 70
          VG LD++VS+ +L+++ +QAG +V+ H+P+D+ +G+ +GY F E+ SEE A+YA+K+ +
Sbjct: 17 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75

[Close]

BLAST of MS023608 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-10
Identity = 26/59 (44.07%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 11 VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFS 70
          VG LD++VS+ +L+++ +QAG +V+ H+P+D+ +G+ +GY F E+ SEE A+YA+K+ +
Sbjct: 17 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75

[Close]

BLAST of MS023608 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-10
Identity = 26/59 (44.07%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 11 VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFS 70
          VG LD++VS+ +L+++ +QAG +V+ H+P+D+ +G+ +GY F E+ SEE A+YA+K+ +
Sbjct: 17 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75

[Close]

BLAST of MS023608 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 24/73 (32.88%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 8  SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
          ++ VG LD++VS+ +L+++++QAG +V +++P+D+ +   +G+ F E+  EE A+YA+K+
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73

Query: 68 FSGLVILHNRILK 81
           + ++ L+ + +K
Sbjct: 74 LN-MIKLYGKPIK 85

[Close]

BLAST of MS023608 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08
Identity = 28/90 (31.11%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 8   SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
           ++ +GNLD++V+D +L+++ +QAG +V++HIPRD+      G+ F E+  E+   YA ++
Sbjct: 12  TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71

Query: 68  FSGLVILHNRILKFAVSGQDKPSPSSIAIN 98
            +  V L  + ++   + QD+   + I  N
Sbjct: 72  LN-QVKLFGKPIRVNRASQDRGVNTLIGAN 100

[Close]

BLAST of MS023608 vs. ExPASy TrEMBL
Match: A0A6J1CKW6 (RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.8e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 11  VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG 70
           VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG
Sbjct: 12  VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG 71

Query: 71  LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR 130
           LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR
Sbjct: 72  LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR 131

Query: 131 FSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNP 190
           FSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNP
Sbjct: 132 FSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNP 191

Query: 191 VYYPPYEFLN 201
           VYYPPYEFLN
Sbjct: 192 VYYPPYEFLN 201

[Close]

BLAST of MS023608 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.4e-86
Identity = 159/195 (81.54%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 6   GLSLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAV 65
           G ++ +GNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESG+P+GYAFAEYE+EEI NYAV
Sbjct: 7   GCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYAV 66

Query: 66  KLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRL 125
           KLFSGLV LHNR LKFAVSGQDKPSPSS AI SSSNISHK RSQ VPGYS+EIS YSNRL
Sbjct: 67  KLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRL 126

Query: 126 STSCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRY 185
           S SCRFSAYPENHLEAP YPGLVNQSNGYGS+  ++NN+YSQRY GT LDSFNH + RR+
Sbjct: 127 SNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRH 186

Query: 186 ETSNPVYYPPYEFLN 201
           +TS PVYYPPYE LN
Sbjct: 187 DTSYPVYYPPYELLN 201

[Close]

BLAST of MS023608 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.2e-85
Identity = 158/195 (81.03%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 6   GLSLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAV 65
           G ++ +GNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESG+P+GYAFAEYE+EEI NYAV
Sbjct: 7   GCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEEITNYAV 66

Query: 66  KLFSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRL 125
           KLFSGLV LHNR LKFAVSGQDKPSPSS AI SSSNISHK RSQ VPGYS+EIS YSNRL
Sbjct: 67  KLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRL 126

Query: 126 STSCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRY 185
           S SCRFSAYPENH+EAP YPGLVNQSNGYGS+  ++NN+YSQRY GT LDSFNH + RR+
Sbjct: 127 SNSCRFSAYPENHVEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRH 186

Query: 186 ETSNPVYYPPYEFLN 201
           +TS PVYYPPYE LN
Sbjct: 187 DTSYPVYYPPYELLN 201

[Close]

BLAST of MS023608 vs. ExPASy TrEMBL
Match: A0A6J1EF34 (RNA-binding protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111432704 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.0e-77
Identity = 149/193 (77.20%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 8   SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
           +L VGNLD+RVSD+VLYDILIQAGR+VDLHIPRDKESGKPKG+AFAEYE+E+I NYA+KL
Sbjct: 10  TLYVGNLDERVSDKVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYENEDITNYAIKL 69

Query: 68  FSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLST 127
           FSGLV LHNR LKFAVSGQDKPSPS     SSSNISHK RS  V  YS+E SQYSNRLST
Sbjct: 70  FSGLVTLHNRTLKFAVSGQDKPSPS-----SSSNISHKSRSHIVSDYSNETSQYSNRLST 129

Query: 128 SCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYET 187
           SCRFSAYPENH EA L+PGLVNQ NGYG H+ NYNNE+SQRY  TTLDSF  ++ RR++T
Sbjct: 130 SCRFSAYPENHREALLHPGLVNQYNGYGFHLDNYNNEHSQRYSRTTLDSFYQTKSRRHDT 189

Query: 188 SNPVYYPPYEFLN 201
           S PVYYPP+E LN
Sbjct: 190 SYPVYYPPHELLN 197

[Close]

BLAST of MS023608 vs. ExPASy TrEMBL
Match: A0A6J1I7S0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472063 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.9e-76
Identity = 146/189 (77.25%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 8   SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
           +L VGNLD+RV+D+VLYDILIQAGR+VDLH+PRDKESGKPKG+AFAEYE+E+I NYA+KL
Sbjct: 10  TLYVGNLDERVTDKVLYDILIQAGRVVDLHMPRDKESGKPKGFAFAEYENEDITNYAIKL 69

Query: 68  FSGLVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLST 127
           FSGLV LHNR LKFAVSGQDKPSPSS AI SSSNISHK RS  V  YS+E SQYSNRLST
Sbjct: 70  FSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSHIVSNYSNETSQYSNRLST 129

Query: 128 SCRFSAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYET 187
           SCRFSAYPENH EA LYPGLV+Q NG G H+ NYNNE SQRY  TTLDSF  ++ RR++T
Sbjct: 130 SCRFSAYPENHQEALLYPGLVDQYNGCGFHLDNYNNEQSQRYSRTTLDSFYQTKSRRHDT 189

Query: 188 SNPVYYPPY 197
           S PVYYPP+
Sbjct: 190 SYPVYYPPH 198

[Close]

BLAST of MS023608 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 164.9 bits (416), Expect = 6.9e-41
Identity = 95/179 (53.07%), Postives = 123/179 (68.72%), Query Frame = 0


Query: 11  VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG 70
           +GN+D+RVSDRVLYDI+IQAGR++DLHIPRDKE+ KPKG+AFAEYE+EEIA+YAVKLFSG
Sbjct: 11  IGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70

Query: 71  LVILHNRILKFAVSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCR 130
           LV L+NR LKFA+SGQDK        ++S+N  H+ R Q +    S+ + Y +    S +
Sbjct: 71  LVSLYNRTLKFAISGQDKLQ------SNSANSGHRARPQSLAFEHSDRAAYHHLERFSSQ 130

Query: 131 F----SAYPENHLEAPLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRY 186
                S  P ++ + P  PG+   SNG        + EYS+R  G+ LDS NHSRPRRY
Sbjct: 131 LISPPSPLPLDYTQEPPPPGV---SNG-------ASLEYSRRVLGSALDSINHSRPRRY 173

[Close]

BLAST of MS023608 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11
Identity = 29/80 (36.25%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 11  VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKLFSG 70
           VG LD ++S+ +L+++ +QAG +V++++P+D+ +   + Y F EY SEE A+YA+K+ + 
Sbjct: 29  VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLN- 88

Query: 71  LVILHNRILKFAVSGQDKPS 91
           ++ LH + ++   + QDK S
Sbjct: 89  MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of MS023608 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 49.3 bits (116), Expect = 4.2e-06
Identity = 32/103 (31.07%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 8   SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
           SL V N+  R +   LY +  + G++VD+ IPRD+ +G  +G+AF  Y+ ++ A+ AV+ 
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 68  FSGLVILHNRI-LKFAVSGQDKPSPSSIAINSSSNISHKLRSQ 110
             G V+    I ++FA  G +    S   +      S + RS+
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSR 119

[Close]

BLAST of MS023608 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 49.3 bits (116), Expect = 4.2e-06
Identity = 32/103 (31.07%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 8   SLSVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIANYAVKL 67
           SL V N+  R +   LY +  + G++VD+ IPRD+ +G  +G+AF  Y+ ++ A+ AV+ 
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 68  FSGLVILHNRI-LKFAVSGQDKPSPSSIAINSSSNISHKLRSQ 110
             G V+    I ++FA  G +    S   +      S + RS+
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSR 119

[Close]

BLAST of MS023608 vs. TAIR 10
Match: AT1G71800.1 (cleavage stimulating factor 64 )

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-05
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 11 VGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEEIA 62
          VGN+    ++  L +I  + G +V   +  D+E+GKPKGY F EY+ EE A
Sbjct: 13 VGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63

The following BLAST results are available for this feature:

BLAST of MS023608 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141807.1	1.2e-103	100.00	RNA-binding protein 7 [Momordica charantia]	[more]
XP_022973396.1	1.1e-85	81.54	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]
XP_022932504.1	2.5e-85	81.03	RNA-binding protein 7 isoform X1 [Cucurbita moschata]	[more]
XP_023523852.1	4.7e-84	80.51	RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022925403.1	1.2e-76	77.20	RNA-binding protein 7-like [Cucurbita moschata]	[more]

BLAST of MS023608 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	8.0e-10	44.07	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	8.0e-10	44.07	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	8.0e-10	44.07	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	1.2e-08	32.88	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	3.4e-08	31.11	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of MS023608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKW6	5.8e-104	100.00	RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1	[more]
A0A6J1I8J0	5.4e-86	81.54	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EX61	1.2e-85	81.03	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A6J1EF34	6.0e-77	77.20	RNA-binding protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111432704 PE=4 SV...	[more]
A0A6J1I7S0	3.9e-76	77.25	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147206...	[more]

BLAST of MS023608 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	6.9e-41	53.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	1.9e-11	36.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	4.2e-06	31.07	ortholog of human splicing factor SC35	[more]
AT5G64200.2	4.2e-06	31.07	ortholog of human splicing factor SC35	[more]
AT1G71800.1	1.6e-05	41.18	cleavage stimulating factor 64	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..82 e-value: 2.3E-14 score: 63.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 1.1E-11 score: 44.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..86 score: 14.061211
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..91 e-value: 4.5E-15 score: 57.6
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 8..196
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 8..196
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023608.1	MS023608.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding