MS023606 (gene) Bitter gourd (TR) v1

Overview


Name	MS023606
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribonuclease P
Location	scaffold155: 530338 .. 531651 (-)
RNA-Seq Expression	MS023606
Synteny	MS023606

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGTATAGAAACCGATACTTGATACTTGAAGTTATCTTAGATCCCGAAAAAGACTTTGCAACAGATGATTCTATTATCATTACCCAATACAATATTTCGAAAGCAATCAAGGATAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCACACTCGGATCTTTTCAAGGTAGATAATCTGCATCTTCCTAATGCTTTTTTTTTTTTCTTAAATAGAATTTAGTTTTCTGTTTTTGAGAATTATTCTTGCTTCCTCATATAGGTGTAATGTTGAACTACAAGCTTAATTTTTAAAAACGGAAAAGAAAAAACAAAATGTTTATCATCTGGGCTTTAATGTTTCTTTTTGAATTTTTACTGTTTATTTAGTTAGGTATGTAAATCCGATCACAAAGTTATGTATCATTAGAACTTCCAAAGAGGACTACCAGAAGGTCTGGGCTGCAATTACTATGGTGAGGACTATCGGCAATTGTCCTGTTCTGTTTAATCTACTGGACCTAAATGGTGAGTCTTTCTTTAGGATCATCGTTTTTCTTTGTGTTATGGACTATTTTCTTACCAAAAAAACATGTTATTGATTCTTCCAATTTAGTCATATGATGTTGTTCTAGTATAGTTAGTAAATGACATCAACAAACTTGAAATTTTGGGACGTTTGATAAAGTTAGTGTTTCTTTTATCTGTTTCCTCATTTTTAATAAAGAAACATAGAATTACGTGGCCCCCAACACTCGATGGTCAAATAGGGAACGAGAACAAGAAACAAGAAACTTAGGGCTAATTTGGTAACGTTCCTATTTCTTGTTTCAGTTTTTTCATTTTTAATAAAGAAAAATGAATTGCATGACCCCAATATCCATGAATTAAAGTATGATAAAACAATCTTTTTATTTATGTTTTGGAAAAAATTGGGATTGGAAACAAGAAATAAGAAACTTGTTTTGTGTGTTGCAAAGTGTGTTATTTTTCAGTTGATCCTCAATCGAAGTTTCAAATATTCTCCAGCATAATAATTACTTATTAGTTCTCTTTTGCTATATTATCATATACCAATTCTTTTTCTGATAAAGTTTGGCTTTCAAATTAATTTTTTCCCCACTGATTTTTCCTCATAAGAGTTGGCAATAGAATTGAACATTAGCTCCATTTTATTTTACAGGAAATACCAGGGCTTGCAAGAACACTGCCTTGAGGTTCGAAGAATTGAAGTTTGAGCAATATAAGCTTATGGTTGGATTTCGTCTCTCGGATGATGTCAATTTGCAAATGCAGAATTGTCTCGAGAAGATTAGAACTTGGGAC

mRNA sequence

ATGGTGAGGTATAGAAACCGATACTTGATACTTGAAGTTATCTTAGATCCCGAAAAAGACTTTGCAACAGATGATTCTATTATCATTACCCAATACAATATTTCGAAAGCAATCAAGGATAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCACACTCGGATCTTTTCAAGTTAGGTATGTAAATCCGATCACAAAGTTATGTATCATTAGAACTTCCAAAGAGGACTACCAGAAGGTCTGGGCTGCAATTACTATGGTGAGGACTATCGGCAATTGTCCTGTTCTGTTTAATCTACTGGACCTAAATGGAAATACCAGGGCTTGCAAGAACACTGCCTTGAGGTTCGAAGAATTGAAGTTTGAGCAATATAAGCTTATGGTTGGATTTCGTCTCTCGGATGATGTCAATTTGCAAATGCAGAATTGTCTCGAGAAGATTAGAACTTGGGAC

Coding sequence (CDS)

ATGGTGAGGTATAGAAACCGATACTTGATACTTGAAGTTATCTTAGATCCCGAAAAAGACTTTGCAACAGATGATTCTATTATCATTACCCAATACAATATTTCGAAAGCAATCAAGGATAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCACACTCGGATCTTTTCAAGTTAGGTATGTAAATCCGATCACAAAGTTATGTATCATTAGAACTTCCAAAGAGGACTACCAGAAGGTCTGGGCTGCAATTACTATGGTGAGGACTATCGGCAATTGTCCTGTTCTGTTTAATCTACTGGACCTAAATGGAAATACCAGGGCTTGCAAGAACACTGCCTTGAGGTTCGAAGAATTGAAGTTTGAGCAATATAAGCTTATGGTTGGATTTCGTCTCTCGGATGATGTCAATTTGCAAATGCAGAATTGTCTCGAGAAGATTAGAACTTGGGAC

Protein sequence

MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEELKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD

Homology

[Close]

BLAST of MS023606 vs. NCBI nr
Match: XP_022141762.1 (probable ribonuclease P/MRP protein subunit POP5 [Momordica charantia] >XP_022141763.1 probable ribonuclease P/MRP protein subunit POP5 [Momordica charantia])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV
Sbjct: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE
Sbjct: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
Sbjct: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 153

[Close]

BLAST of MS023606 vs. NCBI nr
Match: XP_038899949.1 (probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 126/151 (83.44%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MVR++NRY++LEV+LDP KD  TDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVRFKNRYMVLEVLLDPNKDLKTDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           +YVNPITKLCIIR S+EDYQ VWAAITMVRTI NCPV+FNLLDL+GNTRACKNTALR ++
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRACKNTALRLDK 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRT 152
           LKFEQYKLMVG RL D+VNLQMQNCLEKI T
Sbjct: 121 LKFEQYKLMVGHRLPDNVNLQMQNCLEKIAT 151

[Close]

BLAST of MS023606 vs. NCBI nr
Match: XP_022932062.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG6607595.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037218.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 127/153 (83.01%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           RYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL GN+RACKNTALR +E
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVG R+SD VNLQMQNCLEKIR+ D
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLD 153

[Close]

BLAST of MS023606 vs. NCBI nr
Match: XP_022972913.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 127/153 (83.01%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           +YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL GN+RACKNTALR +E
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVG R+SD VNLQMQNCLEKIRT D
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLD 153

[Close]

BLAST of MS023606 vs. NCBI nr
Match: XP_023524475.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 4.4e-66
Identity = 126/153 (82.35%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MV ++NRYL+ EV LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVSFKNRYLVFEVALDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           RYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL GN+RACKNTALR +E
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVG  +SD VNLQM NCLEKIRT D
Sbjct: 121 LKFEQYKLMVGPNISDGVNLQMHNCLEKIRTLD 153

[Close]

BLAST of MS023606 vs. ExPASy Swiss-Prot
Match: Q6AWV1 (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702 GN=EMB1687 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-45
Identity = 87/151 (57.62%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDS-IIITQYNISKAIKDSILLNFGECGFASTLGSFQ 60
           MV ++NRY+++EV LDP+KD   + + II+TQ+N+SKAIKDSIL+NFGECG  S+LGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFE 120
           V+YVNPITKLCI+R+S+E++++VW AIT+V++IGNCPV+ NLLD++G  RAC++TAL+ +
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGFRLSDDVNLQMQNCLEKIR 151
           + KFEQ        LS++   QM   LEKI+
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIK 147

[Close]

BLAST of MS023606 vs. ExPASy Swiss-Prot
Match: Q9UU90 (Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC830.09c PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSI----IITQYNISKAIKDSILLNFGECGFASTLG 60
           MVR+++RYL+ EV+    K+F    +I     IT  ++SK I+  +  NFG+ G      
Sbjct: 1   MVRFKSRYLLFEVLYPEAKEFFDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVAS 60

Query: 61  SFQVRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTAL 120
           S  V+Y +P T   I+R S++ ++  WAA+ ++R +   PV+  ++ ++G  +  +  A+
Sbjct: 61  SLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAAI 120

Query: 121 RFEELKFEQYKLM 130
              + +     LM
Sbjct: 121 ERNKSEIHNISLM 133

[Close]

BLAST of MS023606 vs. ExPASy Swiss-Prot
Match: Q54EP3 (Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=44689 GN=pop5 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 0


Query: 1   MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQ 60
           MVR +NRYL+ EVI  D EK     DS +  Q+ IS  +K+ +    GE  + +   + +
Sbjct: 1   MVRLKNRYLMTEVIWHDNEKSTQLSDSWLF-QF-ISNEVKEKL----GELTYEAFKKTLK 60

Query: 61  VRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALR 118
           + YVNP T + IIR S E Y+ +W A+T++ +    P+ F ++ + G+ R C+  A++
Sbjct: 61  IIYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIK 112

[Close]

BLAST of MS023606 vs. ExPASy Swiss-Prot
Match: Q969H6 (Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.5e-11
Identity = 39/123 (31.71%), Postives = 65/123 (52.85%), Query Frame = 0


Query: 1   MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQ 60
           MVR+++RYL+ E++  DP    + DD +      +S  ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCELVSDDPRCRLSLDDRV------LSSLVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGN----CPVLFNLLDLNGNTRACKNTA 119
           VRY+N  T + ++R  KE YQ VW+A+  +  + N     P  FN L + G  R C+   
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFL 117

[Close]

BLAST of MS023606 vs. ExPASy Swiss-Prot
Match: Q1JQ92 (Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09
Identity = 37/123 (30.08%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 1   MVRYRNRYLILEVIL-DPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQ 60
           MVR+++RYL+ EV+  DP      +D ++ T       ++D+I    G  G A+    F 
Sbjct: 1   MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 60

Query: 61  VRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGN----CPVLFNLLDLNGNTRACKNTA 119
           VRY+N  T + ++R  KE Y+ VW+A+  + ++ N     P   N L + G  R C+   
Sbjct: 61  VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFLNTLHVGGTIRTCQKFL 117

[Close]

BLAST of MS023606 vs. ExPASy TrEMBL
Match: A0A6J1CLH1 (Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.1e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV
Sbjct: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE
Sbjct: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD
Sbjct: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 153

[Close]

BLAST of MS023606 vs. ExPASy TrEMBL
Match: A0A6J1IBH7 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 127/153 (83.01%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           +YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL GN+RACKNTALR +E
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVG R+SD VNLQMQNCLEKIRT D
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRTLD 153

[Close]

BLAST of MS023606 vs. ExPASy TrEMBL
Match: A0A6J1EVL4 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 127/153 (83.01%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MV ++NRYL+ EV+LDP KD ATDD IIITQYN+SKAIKDSILLNFGECGFAS+LGSFQV
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           RYVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL GN+RACKNTALR +E
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKIRTWD 154
           LKFEQYKLMVG R+SD VNLQMQNCLEKIR+ D
Sbjct: 121 LKFEQYKLMVGPRISDGVNLQMQNCLEKIRSLD 153

[Close]

BLAST of MS023606 vs. ExPASy TrEMBL
Match: A0A5D3CDD4 (Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.7e-63
Identity = 119/149 (79.87%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MVR++NRY++ EV+LDP K+  TDD IIITQYN+SKAIKDSILLNFGECGFAS LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           +YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL+GNTRACKNTALR + 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKI 150
           LKFEQYKLMVG  L D+V +QMQNCLEKI
Sbjct: 121 LKFEQYKLMVGHCLPDNVKMQMQNCLEKI 149

[Close]

BLAST of MS023606 vs. ExPASy TrEMBL
Match: A0A1S3CEI9 (Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.5e-63
Identity = 118/149 (79.19%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDSIIITQYNISKAIKDSILLNFGECGFASTLGSFQV 60
           MVR++NRY++ EV+LDP K+  TDD IIITQYN+SKAIKDSILLNFGECGFAS LGSFQV
Sbjct: 1   MVRFKNRYMVFEVLLDPNKNLKTDDPIIITQYNVSKAIKDSILLNFGECGFASALGSFQV 60

Query: 61  RYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFEE 120
           +YVNPITKLCIIR S+EDYQ VWAAITMVR+I NCPV+FNLLDL+GNTRACKNTALR + 
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLSGNTRACKNTALRLDG 120

Query: 121 LKFEQYKLMVGFRLSDDVNLQMQNCLEKI 150
           LKFEQYKLMVG  L D+V + MQNCLEKI
Sbjct: 121 LKFEQYKLMVGHCLPDNVKIHMQNCLEKI 149

[Close]

BLAST of MS023606 vs. TAIR 10
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-46
Identity = 87/151 (57.62%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MVRYRNRYLILEVILDPEKDFATDDS-IIITQYNISKAIKDSILLNFGECGFASTLGSFQ 60
           MV ++NRY+++EV LDP+KD   + + II+TQ+N+SKAIKDSIL+NFGECG  S+LGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  VRYVNPITKLCIIRTSKEDYQKVWAAITMVRTIGNCPVLFNLLDLNGNTRACKNTALRFE 120
           V+YVNPITKLCI+R+S+E++++VW AIT+V++IGNCPV+ NLLD++G  RAC++TAL+ +
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

Query: 121 ELKFEQYKLMVGFRLSDDVNLQMQNCLEKIR 151
           + KFEQ        LS++   QM   LEKI+
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIK 147

The following BLAST results are available for this feature:

BLAST of MS023606 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141762.1	1.7e-81	100.00	probable ribonuclease P/MRP protein subunit POP5 [Momordica charantia] >XP_02214...	[more]
XP_038899949.1	1.8e-67	83.44	probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]	[more]
XP_022932062.1	2.3e-67	83.01	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG660759...	[more]
XP_022972913.1	2.3e-67	83.01	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]	[more]
XP_023524475.1	4.4e-66	82.35	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS023606 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWV1	4.5e-45	57.62	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702...	[more]
Q9UU90	1.0e-12	28.57	Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972...	[more]
Q54EP3	1.5e-11	34.75	Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium discoideum OX=...	[more]
Q969H6	5.5e-11	31.71	Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens OX=9606 GN=POP5 PE=1 SV=...	[more]
Q1JQ92	1.8e-09	30.08	Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus OX=9913 GN=POP5 PE=2 SV=1	[more]

BLAST of MS023606 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLH1	8.1e-82	100.00	Ribonuclease P OS=Momordica charantia OX=3673 GN=LOC111012044 PE=3 SV=1	[more]
A0A6J1IBH7	1.1e-67	83.01	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1	[more]
A0A6J1EVL4	1.1e-67	83.01	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1	[more]
A0A5D3CDD4	1.7e-63	79.87	Ribonuclease P OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00450 ...	[more]
A0A1S3CEI9	6.5e-63	79.19	Ribonuclease P OS=Cucumis melo OX=3656 GN=LOC103500063 PE=3 SV=1	[more]

BLAST of MS023606 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04635.1	3.2e-46	57.62	ribonuclease P family protein / Rpp14 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	GENE3D	3.30.70.3250	Ribonuclease P, Pop5 subunit	coord: 1..120 e-value: 3.6E-28 score: 99.9
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 1..118
IPR002759	RNase P subunit Pop5/Rpp14/Rnp2-like	PFAM	PF01900	RNase_P_Rpp14	coord: 7..115 e-value: 6.0E-25 score: 87.4
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 1..140
None	No IPR available	PANTHER	PTHR10993:SF12	RIBONUCLEASE P/MRP PROTEIN SUBUNIT POP5	coord: 1..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023606.1	MS023606.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0030677	ribonuclease P complex