MS023598 (gene) Bitter gourd (TR) v1

Overview
NameMS023598
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold155: 133928 .. 134187 (+)
RNA-Seq ExpressionMS023598
SyntenyMS023598
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAATGGAGTCTTTACCTGCATAATAGGAAAGAATTCGTTCACGGATATGGTGGCTGCTGGTTAACCATTAAAGACTTACCACTGTATTATTGGACTCAGTCAACCTTTGATGCTATTGGAATGCACTTTGGTGGGCTGCTAAAAGTTTCTAAAAAACTCTTAACATGTTGGATGCCTCCTAAGCTTTCATCAAAGTTGAACCCAATTTTTGTGGGTTTATTCCGGCCACTATGACCATTACCGATGAGAAATATGGA

mRNA sequence

AAAAAATGGAGTCTTTACCTGCATAATAGGAAAGAATTCGTTCACGGATATGGTGGCTGCTGGTTAACCATTAAAGACTTACCACTGTATTATTGGACTCAGTCAACCTTTGATGCTATTGGAATGCACTTTGGTGGGCTGCTAAAAGTTTCTAAAAAACTCTTAACATGTTGGATGCCTCCTGCTTTCATCAAAGTTGAACCCAATTTTTGTGGGTTTATTCCGGCCACTATGACCATTACCGATGAGAAATATGGA

Coding sequence (CDS)

AAAAAATGGAGTCTTTACCTGCATAATAGGAAAGAATTCGTTCACGGATATGGTGGCTGCTGGTTAACCATTAAAGACTTACCACTGTATTATTGGACTCAGTCAACCTTTGATGCTATTGGAATGCACTTTGGTGGGCTGCTAAAAGTTTCTAAAAAACTCTTAACATGTTGGATGCCTCCTGCTTTCATCAAAGTTGAACCCAATTTTTGTGGGTTTATTCCGGCCACTATGACCATTACCGATGAGAAATATGGA

Protein sequence

KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCWMPPAFIKVEPNFCGFIPATMTITDEKYG
Homology
BLAST of MS023598 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1   KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLT-CWM 60
           ++W+  +H R  +V GYGG W++IK+LPL YW + TF+AIG +FGGL  ++ ++L    +
Sbjct: 235 ERWNNSIHGRPAYVRGYGG-WISIKNLPLDYWCKQTFEAIGKYFGGLESIAMEILNLIKV 294

Query: 61  PPAFIKVEPNFCGFIPATMTITDEKYG 87
             A IKV+ N CGF+PAT+ +++EK G
Sbjct: 295 LDAIIKVKENLCGFVPATIEVSNEKRG 320

BLAST of MS023598 vs. NCBI nr
Match: XP_031738083.1 (uncharacterized protein LOC116402658 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 8  HNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKV 67
          H+R   + GYGG WL +K+LPL  W++S F+AIG HFGG +K++ + L       A I+V
Sbjct: 6  HSRPLVLKGYGG-WLKVKNLPLDLWSRSVFEAIGDHFGGFIKIATETLNLTNCSEARIQV 65

Query: 68 EPNFCGFIPATMTITDEKYG 87
          + N CGF+ +T  I+D K G
Sbjct: 66 KRNLCGFVLSTNEISDHKRG 84

BLAST of MS023598 vs. NCBI nr
Match: TYJ98837.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-10
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 1   KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-M 60
           ++W    H+      GYGG WL IK+LPL YW +ST + IG HF GL  ++ + L    +
Sbjct: 200 ERWDNLKHSWPLVQKGYGG-WLKIKNLPLDYWCRSTLEVIGDHFRGLTDIAFETLNLTNV 259

Query: 61  PPAFIKVEPNFCGFIPATMTITDEK 85
             A I+V+ N CGF+P+T+ ITD K
Sbjct: 260 SEARIQVKKNLCGFVPSTIEITDLK 283

BLAST of MS023598 vs. NCBI nr
Match: KAA0051433.1 (hypothetical protein E6C27_scaffold55G001850 [Cucumis melo var. makuwa] >TYK22220.1 hypothetical protein E5676_scaffold333G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 16  GYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLL-KVSKKLLTCWMPPAFIKVEPNFCGFI 75
           GYGG WL IK+LPL YW +ST + I  HFGGL  + S+ L    +  A+I+V+ N CGF+
Sbjct: 61  GYGG-WLKIKNLPLDYWCRSTLEVIENHFGGLTDRASETLNLTNITEAWIQVKKNLCGFV 120

Query: 76  PATMTITDEK 85
           P T+ ITD K
Sbjct: 121 PPTIEITDLK 129

BLAST of MS023598 vs. NCBI nr
Match: KAA0036017.1 (hypothetical protein E6C27_scaffold112G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-08
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 2  KWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MP 61
          +W    H+R      YG  WL IK L L YW +STF+ IG HFGGL  ++ + L    + 
Sbjct: 13 RWDNLKHSRPLVQKDYGS-WLKIKILHLDYWCRSTFEVIGDHFGGLTDIASETLNLTNIS 72

Query: 62 PAFIKVEPNFCGFIPATMTITDEK 85
           A I+V+   CGF+P+T+ IT+ K
Sbjct: 73 EAQIQVKKKLCGFVPSTIEITNLK 95

BLAST of MS023598 vs. ExPASy TrEMBL
Match: A0A5D3BI91 (Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00280 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-10
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 1   KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-M 60
           ++W    H+      GYGG WL IK+LPL YW +ST + IG HF GL  ++ + L    +
Sbjct: 200 ERWDNLKHSWPLVQKGYGG-WLKIKNLPLDYWCRSTLEVIGDHFRGLTDIAFETLNLTNV 259

Query: 61  PPAFIKVEPNFCGFIPATMTITDEK 85
             A I+V+ N CGF+P+T+ ITD K
Sbjct: 260 SEARIQVKKNLCGFVPSTIEITDLK 283

BLAST of MS023598 vs. ExPASy TrEMBL
Match: A0A5A7U6A9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001030 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 16  GYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLL-KVSKKLLTCWMPPAFIKVEPNFCGFI 75
           GYGG WL IK+LPL YW +ST + I  HFGGL  + S+ L    +  A+I+V+ N CGF+
Sbjct: 61  GYGG-WLKIKNLPLDYWCRSTLEVIENHFGGLTDRASETLNLTNITEAWIQVKKNLCGFV 120

Query: 76  PATMTITDEK 85
           P T+ ITD K
Sbjct: 121 PPTIEITDLK 129

BLAST of MS023598 vs. ExPASy TrEMBL
Match: A0A5A7T365 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00020 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 2  KWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MP 61
          +W    H+R      YG  WL IK L L YW +STF+ IG HFGGL  ++ + L    + 
Sbjct: 13 RWDNLKHSRPLVQKDYGS-WLKIKILHLDYWCRSTFEVIGDHFGGLTDIASETLNLTNIS 72

Query: 62 PAFIKVEPNFCGFIPATMTITDEK 85
           A I+V+   CGF+P+T+ IT+ K
Sbjct: 73 EAQIQVKKKLCGFVPSTIEITNLK 95

BLAST of MS023598 vs. ExPASy TrEMBL
Match: A0A5D3DVS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00720 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 8   HNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-MPPAFIKV 67
           H+R   + GY G WL IK+LPL  W +STF+ IG H  GL+ ++ + L       A I+V
Sbjct: 39  HSRSLVLKGYDG-WLKIKNLPLDDWCRSTFEVIGNHLRGLIDIAIETLNLTNCSDARIQV 98

Query: 68  EPNFCGFIPATMTITDEKYG 87
           + N CGF+ +T  ITD K G
Sbjct: 99  DKNLCGFVLSTFEITDLKRG 117

BLAST of MS023598 vs. ExPASy TrEMBL
Match: A0A5D3DJE1 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001100 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.4e-08
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 1   KKWSLYLHNRKEFVHGYGGCWLTIKDLPLYYWTQSTFDAIGMHFGGLLKVSKKLLTCW-M 60
           +KWS   H   + +  YGG W T + +PL+ W  +TF  IG   GGL+KV+++  +   +
Sbjct: 270 EKWSSAYHATPKLIPSYGG-WTTFRGIPLHLWNMTTFQQIGKACGGLIKVAEETKSAKNL 329

Query: 61  PPAFIKVEPNFCGFIPATMTITDEK 85
             A IKV  N+ GF+PA + I D +
Sbjct: 330 IEARIKVRYNYSGFLPANVRIFDNE 353

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038904899.12.0e-1545.98uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida][more]
XP_031738083.12.5e-1045.00uncharacterized protein LOC116402658 [Cucumis sativus][more]
TYJ98837.17.4e-1043.53putative 3,4-dihydroxy-2-butanone kinase isoform X5 [Cucumis melo var. makuwa][more]
KAA0051433.12.1e-0951.43hypothetical protein E6C27_scaffold55G001850 [Cucumis melo var. makuwa] >TYK2222... [more]
KAA0036017.12.4e-0841.67hypothetical protein E6C27_scaffold112G00020 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BI913.6e-1043.53Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa ... [more]
A0A5A7U6A91.0e-0951.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T3651.1e-0841.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DVS92.6e-0843.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DJE17.4e-0837.65DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023598.1MS023598.1mRNA