MS023595 (gene) Bitter gourd (TR) v1

Overview


Name	MS023595
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold155: 108011 .. 108124 (+)
RNA-Seq Expression	MS023595
Synteny	MS023595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTGAA

mRNA sequence

AGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTGAA

Coding sequence (CDS)

AGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACCCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTGAA

Protein sequence

RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE

Homology

[Close]

BLAST of MS023595 vs. NCBI nr
Match: YP_009771867.1 (hypothetical chloroplast RF21 [Baphia racemosa] >YP_009771884.1 hypothetical chloroplast RF21 [Baphia racemosa] >QIT02652.1 hypothetical chloroplast RF21 [Baphia racemosa] >QIT02669.1 hypothetical chloroplast RF21 [Baphia racemosa])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1776 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIQ 1813

[Close]

BLAST of MS023595 vs. NCBI nr
Match: ANO44735.1 (hypothetical chloroplast protein RF21 [Calochortus albus])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1700 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1737

[Close]

BLAST of MS023595 vs. NCBI nr
Match: TAJ03986.1 (AAA family ATPase [Marinilabiliaceae bacterium JC017])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1   RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
           RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 131 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 168

[Close]

BLAST of MS023595 vs. NCBI nr
Match: QRI60548.1 (hypothetical chloroplast RF21 [Hardenbergia violacea] >QRI60565.1 hypothetical chloroplast RF21 [Hardenbergia violacea])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1767 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1804

[Close]

BLAST of MS023595 vs. NCBI nr
Match: QWY89852.1 (Ycf2 [Pouteria aningeri] >QWY89869.1 Ycf2 [Pouteria aningeri])

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-12
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1773 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1810

[Close]

BLAST of MS023595 vs. ExPASy Swiss-Prot
Match: Q8S8V2 (Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1776 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1813

[Close]

BLAST of MS023595 vs. ExPASy Swiss-Prot
Match: A4QKX4 (Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1775 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1812

[Close]

BLAST of MS023595 vs. ExPASy Swiss-Prot
Match: Q8S8U1 (Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1776 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1813

[Close]

BLAST of MS023595 vs. ExPASy Swiss-Prot
Match: A4QKZ7 (Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1775 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1812

[Close]

BLAST of MS023595 vs. ExPASy Swiss-Prot
Match: A4QJF8 (Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1780 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1817

[Close]

BLAST of MS023595 vs. ExPASy TrEMBL
Match: A0A6H0EJY2 (Protein Ycf2 OS=Baphia racemosa OX=143050 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.5e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1776 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIQ 1813

[Close]

BLAST of MS023595 vs. ExPASy TrEMBL
Match: A0A7T2HD08 (Uncharacterized protein OS=Maclura tricuspidata OX=210328 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1769 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1806

[Close]

BLAST of MS023595 vs. ExPASy TrEMBL
Match: A0A7H1A806 (Protein Ycf2 OS=Solms-laubachia eurycarpa OX=369043 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1775 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1812

[Close]

BLAST of MS023595 vs. ExPASy TrEMBL
Match: A0A0C5CHH1 (Protein Ycf2 OS=Solanum lycopersicum OX=4081 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1766 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1803

[Close]

BLAST of MS023595 vs. ExPASy TrEMBL
Match: A0A6H0DZW0 (Protein Ycf2 OS=Cynometra iripa OX=241839 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1795 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1832

[Close]

BLAST of MS023595 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-16
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1776 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1813

[Close]

BLAST of MS023595 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-16
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1    RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIE 39
            RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI+
Sbjct: 1776 RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIK 1813

The following BLAST results are available for this feature:

BLAST of MS023595 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009771867.1	1.6e-12	97.37	hypothetical chloroplast RF21 [Baphia racemosa] >YP_009771884.1 hypothetical chl...	[more]
ANO44735.1	2.0e-12	97.37	hypothetical chloroplast protein RF21 [Calochortus albus]	[more]
TAJ03986.1	2.0e-12	97.37	AAA family ATPase [Marinilabiliaceae bacterium JC017]	[more]
QRI60548.1	2.0e-12	97.37	hypothetical chloroplast RF21 [Hardenbergia violacea] >QRI60565.1 hypothetical c...	[more]
QWY89852.1	2.0e-12	97.37	Ycf2 [Pouteria aningeri] >QWY89869.1 Ycf2 [Pouteria aningeri]	[more]

BLAST of MS023595 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8V2	2.7e-15	97.37	Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1	[more]
A4QKX4	2.7e-15	97.37	Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1	[more]
Q8S8U1	2.7e-15	97.37	Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1	[more]
A4QKZ7	2.7e-15	97.37	Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1	[more]
A4QJF8	2.7e-15	97.37	Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS023595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EJY2	7.5e-13	97.37	Protein Ycf2 OS=Baphia racemosa OX=143050 GN=ycf2 PE=3 SV=1	[more]
A0A7T2HD08	9.9e-13	97.37	Uncharacterized protein OS=Maclura tricuspidata OX=210328 GN=ycf2 PE=4 SV=1	[more]
A0A7H1A806	9.9e-13	97.37	Protein Ycf2 OS=Solms-laubachia eurycarpa OX=369043 GN=ycf2 PE=3 SV=1	[more]
A0A0C5CHH1	9.9e-13	97.37	Protein Ycf2 OS=Solanum lycopersicum OX=4081 GN=ycf2 PE=3 SV=1	[more]
A0A6H0DZW0	9.9e-13	97.37	Protein Ycf2 OS=Cynometra iripa OX=241839 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS023595 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.9e-16	97.37	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.9e-16	97.37	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 1..37
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023595.1	MS023595.1	mRNA