MS023588 (gene) Bitter gourd (TR) v1

Overview
NameMS023588
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPyridoxal kinase
Locationscaffold155: 40133 .. 40231 (+)
RNA-Seq ExpressionMS023588
SyntenyMS023588
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACACGATCCACAGTTGAGCAGTTTGGAGATTCGATTGATTCAATCTCAAGACCAGATTCGTAATCCAAAAGTTGAATTCAAAGCTGAAAAGTACGAT

mRNA sequence

GGACACGATCCACAGTTGAGCAGTTTGGAGATTCGATTGATTCAATCTCAAGACCAGATTCGTAATCCAAAAGTTGAATTCAAAGCTGAAAAGTACGAT

Coding sequence (CDS)

GGACACGATCCACAGTTGAGCAGTTTGGAGATTCGATTGATTCAATCTCAAGACCAGATTCGTAATCCAAAAGTTGAATTCAAAGCTGAAAAGTACGAT

Protein sequence

GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD
Homology
BLAST of MS023588 vs. NCBI nr
Match: XP_022143337.1 (pyridoxal kinase [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-07
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD+IRNPKVEFKAEKY+
Sbjct: 276 GHDPQSSSLEIRLIQSQDEIRNPKVEFKAEKYN 308

BLAST of MS023588 vs. NCBI nr
Match: XP_011651430.1 (pyridoxal kinase isoform X2 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD+IRNPKVEFKA++YD
Sbjct: 254 GHDPQSSSLEIRLIQSQDEIRNPKVEFKAQRYD 286

BLAST of MS023588 vs. NCBI nr
Match: XP_004149445.1 (pyridoxal kinase isoform X1 [Cucumis sativus] >KGN57886.1 hypothetical protein Csa_011119 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD+IRNPKVEFKA++YD
Sbjct: 276 GHDPQSSSLEIRLIQSQDEIRNPKVEFKAQRYD 308

BLAST of MS023588 vs. NCBI nr
Match: XP_038875447.1 (pyridoxal kinase [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD+IRNP+V+FKA+KYD
Sbjct: 276 GHDPQSSSLEIRLIQSQDEIRNPQVQFKAKKYD 308

BLAST of MS023588 vs. NCBI nr
Match: KAG7017950.1 (Pyridoxal kinase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDP+ SSLEIRLIQSQD+IRNP+VE KAEKYD
Sbjct: 286 GHDPKSSSLEIRLIQSQDEIRNPQVELKAEKYD 318

BLAST of MS023588 vs. ExPASy Swiss-Prot
Match: Q8W1X2 (Pyridoxal kinase OS=Arabidopsis thaliana OX=3702 GN=PK PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 6.8e-07
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKY 33
           G+DP  SSLEIRLIQSQ+ IRNPKVE KAE+Y
Sbjct: 277 GYDPTSSSLEIRLIQSQEDIRNPKVELKAERY 308

BLAST of MS023588 vs. ExPASy TrEMBL
Match: A0A6J1CQI2 (Pyridoxal kinase OS=Momordica charantia OX=3673 GN=LOC111013237 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD+IRNPKVEFKAEKY+
Sbjct: 276 GHDPQSSSLEIRLIQSQDEIRNPKVEFKAEKYN 308

BLAST of MS023588 vs. ExPASy TrEMBL
Match: A0A0A0LCU0 (Pyridoxal kinase OS=Cucumis sativus OX=3659 GN=Csa_3G363190 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-07
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD+IRNPKVEFKA++YD
Sbjct: 276 GHDPQSSSLEIRLIQSQDEIRNPKVEFKAQRYD 308

BLAST of MS023588 vs. ExPASy TrEMBL
Match: A0A5D3BQN4 (Pyridoxal kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00360 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDPQ SSLEIRLIQSQD IR PKVEFKAE+Y+
Sbjct: 276 GHDPQSSSLEIRLIQSQDDIRKPKVEFKAERYN 308

BLAST of MS023588 vs. ExPASy TrEMBL
Match: A0A6J1KGY9 (Pyridoxal kinase OS=Cucurbita maxima OX=3661 GN=LOC111493128 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDP+ SSLEIRLIQSQD IRNPK++FKA++YD
Sbjct: 276 GHDPESSSLEIRLIQSQDDIRNPKIKFKAQRYD 308

BLAST of MS023588 vs. ExPASy TrEMBL
Match: A0A6J1G9F5 (Pyridoxal kinase OS=Cucurbita moschata OX=3662 GN=LOC111452161 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKYD 34
           GHDP+ SSLEIRLIQSQD IRNPK++FKA++YD
Sbjct: 276 GHDPESSSLEIRLIQSQDDIRNPKIKFKAQRYD 308

BLAST of MS023588 vs. TAIR 10
Match: AT5G37850.1 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-08
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKY 33
           G+DP  SSLEIRLIQSQ+ IRNPKVE KAE+Y
Sbjct: 311 GYDPTSSSLEIRLIQSQEDIRNPKVELKAERY 342

BLAST of MS023588 vs. TAIR 10
Match: AT5G37850.2 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-08
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKY 33
           G+DP  SSLEIRLIQSQ+ IRNPKVE KAE+Y
Sbjct: 277 GYDPTSSSLEIRLIQSQEDIRNPKVELKAERY 308

BLAST of MS023588 vs. TAIR 10
Match: AT5G37850.3 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-08
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 1   GHDPQLSSLEIRLIQSQDQIRNPKVEFKAEKY 33
           G+DP  SSLEIRLIQSQ+ IRNPKVE KAE+Y
Sbjct: 283 GYDPTSSSLEIRLIQSQEDIRNPKVELKAERY 314

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143337.12.9e-0790.91pyridoxal kinase [Momordica charantia][more]
XP_011651430.13.8e-0787.88pyridoxal kinase isoform X2 [Cucumis sativus][more]
XP_004149445.13.8e-0787.88pyridoxal kinase isoform X1 [Cucumis sativus] >KGN57886.1 hypothetical protein C... [more]
XP_038875447.11.4e-0684.85pyridoxal kinase [Benincasa hispida][more]
KAG7017950.13.2e-0684.85Pyridoxal kinase [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q8W1X26.8e-0778.13Pyridoxal kinase OS=Arabidopsis thaliana OX=3702 GN=PK PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1CQI21.4e-0790.91Pyridoxal kinase OS=Momordica charantia OX=3673 GN=LOC111013237 PE=3 SV=1[more]
A0A0A0LCU01.8e-0787.88Pyridoxal kinase OS=Cucumis sativus OX=3659 GN=Csa_3G363190 PE=3 SV=1[more]
A0A5D3BQN42.7e-0684.85Pyridoxal kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G003... [more]
A0A6J1KGY92.7e-0678.79Pyridoxal kinase OS=Cucurbita maxima OX=3661 GN=LOC111493128 PE=3 SV=1[more]
A0A6J1G9F52.7e-0678.79Pyridoxal kinase OS=Cucurbita moschata OX=3662 GN=LOC111452161 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G37850.14.8e-0878.13pfkB-like carbohydrate kinase family protein [more]
AT5G37850.24.8e-0878.13pfkB-like carbohydrate kinase family protein [more]
AT5G37850.34.8e-0878.13pfkB-like carbohydrate kinase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023588.1MS023588.1mRNA