MS023587 (gene) Bitter gourd (TR) v1

Overview
NameMS023587
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolyprotein
Locationscaffold155: 317 .. 625 (-)
RNA-Seq ExpressionMS023587
SyntenyMS023587
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGACGATGGATGAATCCAAGGTAAAATCCACAGAAGTCGTTGGAATAAAAAACATCCAACATCAGCTGAATTATTCAAACAAGGTTCTAACCACTATGTCGCAAGTGATGAACAAGATAGAAAAGTCTGATCAAGCCATGCTTACGACACCTTCCTCTTCCAAATTTCCTCCTATAGACATCACAAGACCTTTATTTCAGCCTTACGAGTTTCAAATAGGAGAAATAAGAGGAAAAAATTCATCAGAAGATCTTCTCGAAAAGATCAATTCTCAATTGGAGAGGCTATCCATCTCCTCAACGTCCAAG

mRNA sequence

AAGACGATGGATGAATCCAAGGTAAAATCCACAGAAGTCGTTGGAATAAAAAACATCCAACATCAGCTGAATTATTCAAACAAGGTTCTAACCACTATGTCGCAAGTGATGAACAAGATAGAAAAGTCTGATCAAGCCATGCTTACGACACCTTCCTCTTCCAAATTTCCTCCTATAGACATCACAAGACCTTTATTTCAGCCTTACGAGTTTCAAATAGGAGAAATAAGAGGAAAAAATTCATCAGAAGATCTTCTCGAAAAGATCAATTCTCAATTGGAGAGGCTATCCATCTCCTCAACGTCCAAG

Coding sequence (CDS)

AAGACGATGGATGAATCCAAGGTAAAATCCACAGAAGTCGTTGGAATAAAAAACATCCAACATCAGCTGAATTATTCAAACAAGGTTCTAACCACTATGTCGCAAGTGATGAACAAGATAGAAAAGTCTGATCAAGCCATGCTTACGACACCTTCCTCTTCCAAATTTCCTCCTATAGACATCACAAGACCTTTATTTCAGCCTTACGAGTTTCAAATAGGAGAAATAAGAGGAAAAAATTCATCAGAAGATCTTCTCGAAAAGATCAATTCTCAATTGGAGAGGCTATCCATCTCCTCAACGTCCAAG

Protein sequence

KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPIDITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK
Homology
[Close]
BLAST of MS023587 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT+DE KV+   +  IKNIQHQLNYSNK+L+ +S+ + +IE      L  P+ SK PP+D
Sbjct: 7   KTIDEDKVQKVGIREIKNIQHQLNYSNKILSEVSKAVERIEN-----LVLPTVSKIPPVD 66

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSIS 100
             +P+FQP  F+IG +  K    DL  KIN +L  LS++
Sbjct: 67  PRQPIFQPNSFKIGPL--KEDPSDLFAKINRRLSSLSLN 98

[Close]
BLAST of MS023587 vs. NCBI nr
Match: KAA0033289.1 (movement protein [Cucumis melo var. makuwa] >TYK14819.1 movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 5.2e-10
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT+DE KV+   V  +KNIQHQLNY+NKVL+T+S+ + +IE  D ++     + + P  D
Sbjct: 44  KTIDEEKVQKVRVREVKNIQHQLNYTNKVLSTISKAVERIENPDLSI--KAKNPEIPQAD 103

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTS 103
             +P+FQP  F IG++  K+   D+L +IN  L  +SI+  +
Sbjct: 104 PNQPIFQPNSFDIGKL--KDDPSDILIEINKHLSSISINKVA 141

[Close]
BLAST of MS023587 vs. NCBI nr
Match: TYJ98087.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-09
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT++E KV+   V  IKNIQHQLN++NK+L+T+S+ + +IE  +  +     + K P I+
Sbjct: 482 KTINEDKVQKVGVREIKNIQHQLNFTNKILSTVSKAVERIE--NPGLPLKNKNPKIPQIN 541

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK 104
             +P+FQP  F IG++  K  + D L +IN +L  +S++  SK
Sbjct: 542 PNQPIFQPNSFNIGKL--KEDASDYLAEINKRLAAISLNKDSK 580

[Close]
BLAST of MS023587 vs. NCBI nr
Match: KAA0052109.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-09
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT++E KV+   V  IKNIQHQLN++NK+L+T+S+ + +IE  +  +     + K P I+
Sbjct: 482 KTINEDKVQKVGVREIKNIQHQLNFTNKILSTVSKAVERIE--NPGLPLKNKNPKIPQIN 541

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK 104
             +P+FQP  F IG++  K  + D L +IN +L  +S++  SK
Sbjct: 542 PNQPIFQPNSFNIGKL--KEDASDYLAEINKRLAAISLNKDSK 580

[Close]
BLAST of MS023587 vs. NCBI nr
Match: TYK28080.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-08
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT++E KV+   V  IKNIQHQLN +NK+L+T+S+ + +IE  +  +     + K P I+
Sbjct: 482 KTINEDKVQKVGVREIKNIQHQLNITNKILSTVSKAVERIE--NPGLPLKNKNPKIPQIN 541

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK 104
             +P+FQP  F IG++  K  + D L +IN +L  +S++  SK
Sbjct: 542 PNQPIFQPNSFNIGKL--KEDASDYLAEINKRLAAISLNKDSK 580

[Close]
BLAST of MS023587 vs. ExPASy TrEMBL
Match: A0A6J1DFI7 (uncharacterized protein LOC111019629 OS=Momordica charantia OX=3673 GN=LOC111019629 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT+DE KV+   +  IKNIQHQLNYSNK+L+ +S+ + +IE      L  P+ SK PP+D
Sbjct: 7   KTIDEDKVQKVGIREIKNIQHQLNYSNKILSEVSKAVERIEN-----LVLPTVSKIPPVD 66

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSIS 100
             +P+FQP  F+IG +  K    DL  KIN +L  LS++
Sbjct: 67  PRQPIFQPNSFKIGPL--KEDPSDLFAKINRRLSSLSLN 98

[Close]
BLAST of MS023587 vs. ExPASy TrEMBL
Match: A0A5D3CX84 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00080 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-10
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT+DE KV+   V  +KNIQHQLNY+NKVL+T+S+ + +IE  D ++     + + P  D
Sbjct: 44  KTIDEEKVQKVRVREVKNIQHQLNYTNKVLSTISKAVERIENPDLSI--KAKNPEIPQAD 103

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTS 103
             +P+FQP  F IG++  K+   D+L +IN  L  +SI+  +
Sbjct: 104 PNQPIFQPNSFDIGKL--KDDPSDILIEINKHLSSISINKVA 141

[Close]
BLAST of MS023587 vs. ExPASy TrEMBL
Match: A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT++E KV+   V  IKNIQHQLN++NK+L+T+S+ + +IE  +  +     + K P I+
Sbjct: 482 KTINEDKVQKVGVREIKNIQHQLNFTNKILSTVSKAVERIE--NPGLPLKNKNPKIPQIN 541

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK 104
             +P+FQP  F IG++  K  + D L +IN +L  +S++  SK
Sbjct: 542 PNQPIFQPNSFNIGKL--KEDASDYLAEINKRLAAISLNKDSK 580

[Close]
BLAST of MS023587 vs. ExPASy TrEMBL
Match: A0A5A7UF59 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00970 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT++E KV+   V  IKNIQHQLN++NK+L+T+S+ + +IE  +  +     + K P I+
Sbjct: 482 KTINEDKVQKVGVREIKNIQHQLNFTNKILSTVSKAVERIE--NPGLPLKNKNPKIPQIN 541

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK 104
             +P+FQP  F IG++  K  + D L +IN +L  +S++  SK
Sbjct: 542 PNQPIFQPNSFNIGKL--KEDASDYLAEINKRLAAISLNKDSK 580

[Close]
BLAST of MS023587 vs. ExPASy TrEMBL
Match: A0A5D3DXV6 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003440 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 0 

Query: 1   KTMDESKVKSTEVVGIKNIQHQLNYSNKVLTTMSQVMNKIEKSDQAMLTTPSSSKFPPID 60
           KT++E KV+   V  IKNIQHQLN +NK+L+T+S+ + +IE  +  +     + K P I+
Sbjct: 482 KTINEDKVQKVGVREIKNIQHQLNITNKILSTVSKAVERIE--NPGLPLKNKNPKIPQIN 541

Query: 61  ITRPLFQPYEFQIGEIRGKNSSEDLLEKINSQLERLSISSTSK 104
             +P+FQP  F IG++  K  + D L +IN +L  +S++  SK
Sbjct: 542 PNQPIFQPNSFNIGKL--KEDASDYLAEINKRLAAISLNKDSK 580

The following BLAST results are available for this feature:
BLAST of MS023587 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151716.13.2e-1246.46uncharacterized protein LOC111019629 [Momordica charantia][more]
KAA0033289.15.2e-1041.18movement protein [Cucumis melo var. makuwa] >TYK14819.1 movement protein [Cucumi... [more]
TYJ98087.17.5e-0939.81Enzymatic polyprotein [Cucumis melo var. makuwa][more]
KAA0052109.17.5e-0939.81Enzymatic polyprotein [Cucumis melo var. makuwa][more]
TYK28080.12.2e-0839.81movement protein [Cucumis melo var. makuwa][more]
BLAST of MS023587 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS023587 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFI71.6e-1246.46uncharacterized protein LOC111019629 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5D3CX842.5e-1041.18Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G000... [more]
A0A5D3BG413.6e-0939.81Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56... [more]
A0A5A7UF593.6e-0939.81Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57... [more]
A0A5D3DXV61.1e-0839.81Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003... [more]
BLAST of MS023587 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023587.1MS023587.1mRNA