MS023580 (gene) Bitter gourd (TR) v1

Overview
NameMS023580
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionankyrin repeat-containing protein NPR4-like
Locationscaffold1258: 385296 .. 385478 (-)
RNA-Seq ExpressionMS023580
SyntenyMS023580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTTCAAAACACAAAGAAAGGTTCCACCAATATGTCATACTATTTGACGTTTATGAAGCAAATTTTTGAGAATTTAAATCTTGCAGGAGAACCGGTCACTTTAAATTATTTGATGTCTTGTGTTTTGTCAGGTTTGGAGGCTGAATATATACCAATAGTTTGTGAAATTAAAGTTAAAGAT

mRNA sequence

GTTCTTCAAAACACAAAGAAAGGTTCCACCAATATGTCATACTATTTGACGTTTATGAAGCAAATTTTTGAGAATTTAAATCTTGCAGGAGAACCGGTCACTTTAAATTATTTGATGTCTTGTGTTTTGTCAGGTTTGGAGGCTGAATATATACCAATAGTTTGTGAAATTAAAGTTAAAGAT

Coding sequence (CDS)

GTTCTTCAAAACACAAAGAAAGGTTCCACCAATATGTCATACTATTTGACGTTTATGAAGCAAATTTTTGAGAATTTAAATCTTGCAGGAGAACCGGTCACTTTAAATTATTTGATGTCTTGTGTTTTGTCAGGTTTGGAGGCTGAATATATACCAATAGTTTGTGAAATTAAAGTTAAAGAT

Protein sequence

VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVKD
Homology
BLAST of MS023580 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1   VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 60
           VLQNTKK S  MS YL  MKQ  E+L LAGEPV  NYLMSCVLSGLEAEY+PIVC+I+ K
Sbjct: 157 VLQNTKKNSLKMSEYLGLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGK 216

Query: 61  D 62
           D
Sbjct: 217 D 217

BLAST of MS023580 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1   VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 60
           VLQNTKK S  MS YL  MKQ  E+L LAGEPV  NYLMSCVLSGLEAEY+PIVC+I+ K
Sbjct: 157 VLQNTKKNSLKMSEYLGLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGK 216

Query: 61  D 62
           D
Sbjct: 217 D 217

BLAST of MS023580 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 8.6e-13
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 2   LQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 61
           LQNTKKG+  M+ YL FMKQ  E+L LAGEPVTL+YL SC+L+G EAEY+PI+C I+ K
Sbjct: 150 LQNTKKGAMKMTXYLAFMKQTSEDLKLAGEPVTLSYLSSCILTGXEAEYLPILCTIEDK 208

BLAST of MS023580 vs. NCBI nr
Match: KAE8652677.1 (hypothetical protein Csa_014062 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-09
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 60
           +LQNT+KG+  M+ YL+ MKQ  EN+ LAG P++   L S VL GL+ EYIPIVC+I+ K
Sbjct: 169 ILQNTRKGTMRMTEYLSMMKQTLENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIEGK 228

Query: 61  D 62
           +
Sbjct: 229 N 229

BLAST of MS023580 vs. NCBI nr
Match: XP_022142770.1 (uncharacterized protein LOC111012809 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 2   LQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVKD 61
           LQ T+K    MS YL+ MKQ+ + L LAGEP++ + L+S VL+GL AEY+ I+C+I  K+
Sbjct: 41  LQTTRKNQLKMSDYLSTMKQLADCLTLAGEPISTSSLLSSVLTGLNAEYLQIICQINAKE 100

BLAST of MS023580 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1   VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 60
           VLQNTKK S  MS YL  MKQ  E+L LAGEPV  NYLMSCVLSGLEAEY+PIVC+I+ K
Sbjct: 157 VLQNTKKNSLKMSEYLGLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGK 216

Query: 61  D 62
           D
Sbjct: 217 D 217

BLAST of MS023580 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1   VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 60
           VLQNTKK S  MS YL  MKQ  E+L LAGEPV  NYLMSCVLSGLEAEY+PIVC+I+ K
Sbjct: 157 VLQNTKKNSLKMSEYLGLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIEGK 216

Query: 61  D 62
           D
Sbjct: 217 D 217

BLAST of MS023580 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-13
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 2   LQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 61
           LQNTKKG+  M+ YL FMKQ  E+L LAGEPVTL+YL SC+L+G EAEY+PI+C I+ K
Sbjct: 150 LQNTKKGAMKMTXYLAFMKQTSEDLKLAGEPVTLSYLSSCILTGXEAEYLPILCTIEDK 208

BLAST of MS023580 vs. ExPASy TrEMBL
Match: A0A0A0LUB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   VLQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVK 60
           +LQNT+KG+  M+ YL+ MKQ  EN+ LAG P++   L S VL GL+ EYIPIVC+I+ K
Sbjct: 195 ILQNTRKGTMRMTEYLSMMKQTLENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIEGK 254

Query: 61  D 62
           +
Sbjct: 255 N 255

BLAST of MS023580 vs. ExPASy TrEMBL
Match: A0A6J1CLV9 (uncharacterized protein LOC111012809 OS=Momordica charantia OX=3673 GN=LOC111012809 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 2   LQNTKKGSTNMSYYLTFMKQIFENLNLAGEPVTLNYLMSCVLSGLEAEYIPIVCEIKVKD 61
           LQ T+K    MS YL+ MKQ+ + L LAGEP++ + L+S VL+GL AEY+ I+C+I  K+
Sbjct: 41  LQTTRKNQLKMSDYLSTMKQLADCLTLAGEPISTSSLLSSVLTGLNAEYLQIICQINAKE 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157748.17.0e-1573.77uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.17.0e-1573.77uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022143579.18.6e-1366.10ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
KAE8652677.17.5e-0954.10hypothetical protein Csa_014062 [Cucumis sativus][more]
XP_022142770.15.4e-0750.00uncharacterized protein LOC111012809 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU773.4e-1573.77uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTZ73.4e-1573.77uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CPQ74.2e-1366.10ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A0A0LUB03.6e-0954.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1[more]
A0A6J1CLV92.6e-0750.00uncharacterized protein LOC111012809 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023580.1MS023580.1mRNA