MS023556 (gene) Bitter gourd (TR) v1

Overview
NameMS023556
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase zinc-binding domain
Locationscaffold1258: 44537 .. 44773 (+)
RNA-Seq ExpressionMS023556
SyntenyMS023556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACTCCGTCCTATCCTCTGCTCTCGGCCATCCATTTACTAACGAAGCTAAAGCACTCTGGATGCATTTCATTCAGGCCATGCTTTGGTCCATGTGGCTGGAAAGAAACCGTAGGATCTTCCAAGGAAAAGAGGCATCTACTACCAGCCTTTTTGAATCCATAGTGTCATTGGTTGTATCATGGTGCAAATGTTCTCCTACTTTTCAACACTATAGTTTTGTCTCTCTTTTAACCAAT

mRNA sequence

GACTCCGTCCTATCCTCTGCTCTCGGCCATCCATTTACTAACGAAGCTAAAGCACTCTGGATGCATTTCATTCAGGCCATGCTTTGGTCCATGTGGCTGGAAAGAAACCGTAGGATCTTCCAAGGAAAAGAGGCATCTACTACCAGCCTTTTTGAATCCATAGTGTCATTGGTTGTATCATGGTGCAAATGTTCTCCTACTTTTCAACACTATAGTTTTGTCTCTCTTTTAACCAAT

Coding sequence (CDS)

GACTCCGTCCTATCCTCTGCTCTCGGCCATCCATTTACTAACGAAGCTAAAGCACTCTGGATGCATTTCATTCAGGCCATGCTTTGGTCCATGTGGCTGGAAAGAAACCGTAGGATCTTCCAAGGAAAAGAGGCATCTACTACCAGCCTTTTTGAATCCATAGTGTCATTGGTTGTATCATGGTGCAAATGTTCTCCTACTTTTCAACACTATAGTTTTGTCTCTCTTTTAACCAAT

Protein sequence

DSVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSLLTN
Homology
BLAST of MS023556 vs. NCBI nr
Match: OVA14077.1 (Reverse transcriptase zinc-binding domain [Macleaya cordata] >OVA20865.1 Reverse transcriptase zinc-binding domain [Macleaya cordata])

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 17  KALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSL 76
           K +W     A+LW++W+ERN+R+F  +E+S   +  ++ SLV  WC    TF+ Y F  L
Sbjct: 180 KRVWRILNYAILWALWVERNKRVFDDRESSVLEVVNNVKSLVFLWCTKEKTFEGYRFDDL 239

Query: 77  L 78
           +
Sbjct: 240 V 240

BLAST of MS023556 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 2   SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVS 61
           S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      
Sbjct: 893 SIRIDALGR--GKKAKVLWGSLMQAVVWNLWLERNRRIFEDYKGVGVAELWDRVKFWAAL 952

Query: 62  WCKCSPTFQHYSFVSLLTN 80
           W   SP F+   + S++ N
Sbjct: 953 WASTSPAFKDVPYPSIMRN 969

BLAST of MS023556 vs. NCBI nr
Match: BBG98819.1 (VIRB2-interacting protein 2 [Prunus dulcis] >BBH09158.1 VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 2   SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVS 61
           S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      
Sbjct: 826 SIRIDALGR--GKKAKVLWGSLMQAVVWNLWLERNRRIFEDYKGVGVAELWDRVKFWAAL 885

Query: 62  WCKCSPTFQHYSFVSLLTN 80
           W   SP F+   + S++ N
Sbjct: 886 WASTSPAFKDVPYPSIMRN 902

BLAST of MS023556 vs. NCBI nr
Match: OVA10600.1 (hypothetical protein BVC80_3295g1 [Macleaya cordata])

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 15  EAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFV 74
           + K +W   + A++W +W+ERNRR F+ KE S   L   I +L+  W     +FQ  SF 
Sbjct: 91  QGKEIWELILAAVVWCLWVERNRRAFEDKEKSREKLIIEIKALIFYWASTMRSFQDVSFQ 150

Query: 75  SLLTN 80
           +++ N
Sbjct: 151 NVIVN 155

BLAST of MS023556 vs. NCBI nr
Match: XP_010250619.1 (PREDICTED: uncharacterized protein LOC104592815 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 53.5 bits (127), Expect = 9.5e-04
Identity = 26/67 (38.81%), Postives = 35/67 (52.24%), Query Frame = 0

Query: 13  TNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYS 72
           T   K +W     A LW++W E+N RIFQ +E S   + E I++  +SW K S     YS
Sbjct: 123 TKRGKLMWKCIRAATLWTVWEEKNARIFQKQERSLAEIKECILTTTISWLKSSHLLADYS 182

Query: 73  FVSLLTN 80
           F  L  N
Sbjct: 183 FDDLRRN 189

BLAST of MS023556 vs. ExPASy TrEMBL
Match: A0A200QUD8 (Reverse transcriptase zinc-binding domain OS=Macleaya cordata OX=56857 GN=BVC80_1787g164 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 0

Query: 17  KALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFVSL 76
           K +W     A+LW++W+ERN+R+F  +E+S   +  ++ SLV  WC    TF+ Y F  L
Sbjct: 180 KRVWRILNYAILWALWVERNKRVFDDRESSVLEVVNNVKSLVFLWCTKEKTFEGYRFDDL 239

Query: 77  L 78
           +
Sbjct: 240 V 240

BLAST of MS023556 vs. ExPASy TrEMBL
Match: A0A4Y1R3V4 (VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_008314 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 2   SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVS 61
           S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      
Sbjct: 826 SIRIDALGR--GKKAKVLWGSLMQAVVWNLWLERNRRIFEDYKGVGVAELWDRVKFWAAL 885

Query: 62  WCKCSPTFQHYSFVSLLTN 80
           W   SP F+   + S++ N
Sbjct: 886 WASTSPAFKDVPYPSIMRN 902

BLAST of MS023556 vs. ExPASy TrEMBL
Match: A0A5H2Y6K0 (VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_1151S000200 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 2   SVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQG-KEASTTSLFESIVSLVVS 61
           S+   ALG     +AK LW   +QA++W++WLERNRRIF+  K      L++ +      
Sbjct: 893 SIRIDALGR--GKKAKVLWGSLMQAVVWNLWLERNRRIFEDYKGVGVAELWDRVKFWAAL 952

Query: 62  WCKCSPTFQHYSFVSLLTN 80
           W   SP F+   + S++ N
Sbjct: 953 WASTSPAFKDVPYPSIMRN 969

BLAST of MS023556 vs. ExPASy TrEMBL
Match: A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-04
Identity = 27/77 (35.06%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1    DSVLSSALGHPFTNEAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVS 60
            D +L S +G   +  + +LW   + ++LW +WLERN RIF+G E+S  +L++ I     S
Sbjct: 1488 DYMLVSKVGG--SKRSTSLWRTTVLSVLWVVWLERNNRIFEGSESSIETLWDKIKFWTAS 1547

Query: 61   WCKCSPTFQHYSFVSLL 78
            W   +  F++ SF+ L+
Sbjct: 1548 WVYKTKHFENISFLDLI 1562

BLAST of MS023556 vs. ExPASy TrEMBL
Match: A0A200QJC8 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_3295g1 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 15  EAKALWMHFIQAMLWSMWLERNRRIFQGKEASTTSLFESIVSLVVSWCKCSPTFQHYSFV 74
           + K +W   + A++W +W+ERNRR F+ KE S   L   I +L+  W     +FQ  SF 
Sbjct: 91  QGKEIWELILAAVVWCLWVERNRRAFEDKEKSREKLIIEIKALIFYWASTMRSFQDVSFQ 150

Query: 75  SLLTN 80
           +++ N
Sbjct: 151 NVIVN 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OVA14077.12.5e-0437.70Reverse transcriptase zinc-binding domain [Macleaya cordata] >OVA20865.1 Reverse... [more]
BBN69746.14.2e-0435.44VIRB2-interacting protein 2 [Prunus dulcis][more]
BBG98819.14.2e-0435.44VIRB2-interacting protein 2 [Prunus dulcis] >BBH09158.1 VIRB2-interacting protei... [more]
OVA10600.17.2e-0435.38hypothetical protein BVC80_3295g1 [Macleaya cordata][more]
XP_010250619.19.5e-0438.81PREDICTED: uncharacterized protein LOC104592815 isoform X3 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A200QUD81.2e-0437.70Reverse transcriptase zinc-binding domain OS=Macleaya cordata OX=56857 GN=BVC80_... [more]
A0A4Y1R3V42.1e-0435.44VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_008314 PE=4 SV=1[more]
A0A5H2Y6K02.1e-0435.44VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_1151S000200 PE=4 S... [more]
A0A803QEA62.7e-0435.06Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A200QJC83.5e-0435.38Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_3295g1 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023556.1MS023556.1mRNA