MS023514 (gene) Bitter gourd (TR) v1

Overview
NameMS023514
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMATE efflux family protein
Locationscaffold875: 11883 .. 11984 (-)
RNA-Seq ExpressionMS023514
SyntenyMS023514
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCTTGCAGGGCATTTGGATTGGTATGATATGTGGGACATTCTTGCAGACAATGATTCTCTTGTTTATTGTTTATAAAACCAATTGGAACAAGGAGGTA

mRNA sequence

CTTTTCTTGCAGGGCATTTGGATTGGTATGATATGTGGGACATTCTTGCAGACAATGATTCTCTTGTTTATTGTTTATAAAACCAATTGGAACAAGGAGGTA

Coding sequence (CDS)

CTTTTCTTGCAGGGCATTTGGATTGGTATGATATGTGGGACATTCTTGCAGACAATGATTCTCTTGTTTATTGTTTATAAAACCAATTGGAACAAGGAGGTA

Protein sequence

LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV
Homology
[Close]
BLAST of MS023514 vs. NCBI nr
Match: XP_022157691.1 (protein DETOXIFICATION 34-like [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQTMILLFIVYKTNWNKEV
Sbjct: 200 LRVEGIWIGMICGTFLQTMILLFIVYKTNWNKEV 233

[Close]
BLAST of MS023514 vs. NCBI nr
Match: XP_031275745.1 (protein DETOXIFICATION 34-like [Pistacia vera])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 27/32 (84.38%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 3   LQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           +QGIW+GMICGTFLQTMIL++I+YKTNWNKEV
Sbjct: 455 VQGIWVGMICGTFLQTMILVYIIYKTNWNKEV 486

[Close]
BLAST of MS023514 vs. NCBI nr
Match: XP_023006016.1 (protein DETOXIFICATION 34 [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQT+ILLFIVYKTNWNKEV
Sbjct: 448 LGVEGIWIGMICGTFLQTIILLFIVYKTNWNKEV 481

[Close]
BLAST of MS023514 vs. NCBI nr
Match: XP_023548341.1 (protein DETOXIFICATION 34 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQT+ILLFIVYKTNWNKEV
Sbjct: 444 LGVEGIWIGMICGTFLQTIILLFIVYKTNWNKEV 477

[Close]
BLAST of MS023514 vs. NCBI nr
Match: XP_022958965.1 (protein DETOXIFICATION 34 [Cucurbita moschata])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQT+ILLFIVYKTNWNKEV
Sbjct: 444 LGVEGIWIGMICGTFLQTIILLFIVYKTNWNKEV 477

[Close]
BLAST of MS023514 vs. ExPASy Swiss-Prot
Match: F4JH46 (Protein DETOXIFICATION 34 OS=Arabidopsis thaliana OX=3702 GN=DTX34 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-08
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L +QGIWIGMICGT LQT+ILL+++Y TNWNKEV
Sbjct: 487 LGVQGIWIGMICGTSLQTLILLYMIYITNWNKEV 520

[Close]
BLAST of MS023514 vs. ExPASy Swiss-Prot
Match: F4JTB3 (Protein DETOXIFICATION 35 OS=Arabidopsis thaliana OX=3702 GN=DTX35 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-06
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 3   LQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           + G+W GMI GT LQT++LL ++YKTNWNKEV
Sbjct: 435 VMGLWSGMIAGTALQTLLLLIVLYKTNWNKEV 466

[Close]
BLAST of MS023514 vs. ExPASy Swiss-Prot
Match: F4I4Q3 (Protein DETOXIFICATION 32 OS=Arabidopsis thaliana OX=3702 GN=DTX32 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-05
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKE 34
           L ++GIW GM+ GT +QT +LLFI+Y+TNW KE
Sbjct: 444 LGVKGIWTGMLTGTVVQTSVLLFIIYRTNWKKE 476

[Close]
BLAST of MS023514 vs. ExPASy Swiss-Prot
Match: Q940N9 (Protein DETOXIFICATION 39 OS=Arabidopsis thaliana OX=3702 GN=DTX39 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.2e-05
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 4   QGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           +GIW GMI GT +QT+ILL++ Y+T+W+KEV
Sbjct: 458 KGIWTGMIGGTLMQTLILLYVTYRTDWDKEV 488

[Close]
BLAST of MS023514 vs. ExPASy Swiss-Prot
Match: Q9SX83 (Protein DETOXIFICATION 33 OS=Arabidopsis thaliana OX=3702 GN=DTX33 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-04
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKE 34
           L +QGIW GM+ G  LQT+IL+ I+Y TNWNKE
Sbjct: 435 LGVQGIWGGMVAGICLQTLILIGIIYFTNWNKE 467

[Close]
BLAST of MS023514 vs. ExPASy TrEMBL
Match: A0A6J1DYY3 (protein DETOXIFICATION 34-like OS=Momordica charantia OX=3673 GN=LOC111024348 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQTMILLFIVYKTNWNKEV
Sbjct: 200 LRVEGIWIGMICGTFLQTMILLFIVYKTNWNKEV 233

[Close]
BLAST of MS023514 vs. ExPASy TrEMBL
Match: A0A6J1KWL5 (Protein DETOXIFICATION OS=Cucurbita maxima OX=3661 GN=LOC111498894 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQT+ILLFIVYKTNWNKEV
Sbjct: 448 LGVEGIWIGMICGTFLQTIILLFIVYKTNWNKEV 481

[Close]
BLAST of MS023514 vs. ExPASy TrEMBL
Match: A0A6J1H4Z0 (Protein DETOXIFICATION OS=Cucurbita moschata OX=3662 GN=LOC111460097 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L ++GIWIGMICGTFLQT+ILLFIVYKTNWNKEV
Sbjct: 444 LGVEGIWIGMICGTFLQTIILLFIVYKTNWNKEV 477

[Close]
BLAST of MS023514 vs. ExPASy TrEMBL
Match: A0A067H5R1 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g015884mg PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   LQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           +QGIWIGMICGT LQT+ILL+IVYKTNWNKEV
Sbjct: 344 VQGIWIGMICGTLLQTLILLYIVYKTNWNKEV 375

[Close]
BLAST of MS023514 vs. ExPASy TrEMBL
Match: V4U2I8 (Protein DETOXIFICATION OS=Citrus clementina OX=85681 GN=CICLE_v10018703mg PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 3   LQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           +QGIWIGMICGT LQT+ILL+IVYKTNWNKEV
Sbjct: 924 VQGIWIGMICGTLLQTLILLYIVYKTNWNKEV 955

[Close]
BLAST of MS023514 vs. TAIR 10
Match: AT4G00350.1 (MATE efflux family protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-09
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           L +QGIWIGMICGT LQT+ILL+++Y TNWNKEV
Sbjct: 487 LGVQGIWIGMICGTSLQTLILLYMIYITNWNKEV 520

[Close]
BLAST of MS023514 vs. TAIR 10
Match: AT4G25640.1 (detoxifying efflux carrier 35 )

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-07
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 3   LQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           + G+W GMI GT LQT++LL ++YKTNWNKEV
Sbjct: 435 VMGLWSGMIAGTALQTLLLLIVLYKTNWNKEV 466

[Close]
BLAST of MS023514 vs. TAIR 10
Match: AT4G25640.2 (detoxifying efflux carrier 35 )

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-07
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 3   LQGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           + G+W GMI GT LQT++LL ++YKTNWNKEV
Sbjct: 435 VMGLWSGMIAGTALQTLLLLIVLYKTNWNKEV 466

[Close]
BLAST of MS023514 vs. TAIR 10
Match: AT1G23300.1 (MATE efflux family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-06
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 1   LFLQGIWIGMICGTFLQTMILLFIVYKTNWNKE 34
           L ++GIW GM+ GT +QT +LLFI+Y+TNW KE
Sbjct: 444 LGVKGIWTGMLTGTVVQTSVLLFIIYRTNWKKE 476

[Close]
BLAST of MS023514 vs. TAIR 10
Match: AT4G21910.2 (MATE efflux family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-06
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 4   QGIWIGMICGTFLQTMILLFIVYKTNWNKEV 35
           +GIW GMI GT +QT+ILL++ Y+T+W+KEV
Sbjct: 460 KGIWTGMIGGTLMQTLILLYVTYRTDWDKEV 490

The following BLAST results are available for this feature:
BLAST of MS023514 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157691.13.6e-0891.18protein DETOXIFICATION 34-like [Momordica charantia][more]
XP_031275745.11.0e-0784.38protein DETOXIFICATION 34-like [Pistacia vera][more]
XP_023006016.11.0e-0788.24protein DETOXIFICATION 34 [Cucurbita maxima][more]
XP_023548341.11.0e-0788.24protein DETOXIFICATION 34 [Cucurbita pepo subsp. pepo][more]
XP_022958965.11.0e-0788.24protein DETOXIFICATION 34 [Cucurbita moschata][more]
BLAST of MS023514 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JH462.2e-0876.47Protein DETOXIFICATION 34 OS=Arabidopsis thaliana OX=3702 GN=DTX34 PE=2 SV=1[more]
F4JTB32.6e-0665.63Protein DETOXIFICATION 35 OS=Arabidopsis thaliana OX=3702 GN=DTX35 PE=1 SV=1[more]
F4I4Q32.2e-0560.61Protein DETOXIFICATION 32 OS=Arabidopsis thaliana OX=3702 GN=DTX32 PE=3 SV=1[more]
Q940N92.2e-0561.29Protein DETOXIFICATION 39 OS=Arabidopsis thaliana OX=3702 GN=DTX39 PE=2 SV=1[more]
Q9SX831.5e-0463.64Protein DETOXIFICATION 33 OS=Arabidopsis thaliana OX=3702 GN=DTX33 PE=2 SV=1[more]
BLAST of MS023514 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DYY31.7e-0891.18protein DETOXIFICATION 34-like OS=Momordica charantia OX=3673 GN=LOC111024348 PE... [more]
A0A6J1KWL55.0e-0888.24Protein DETOXIFICATION OS=Cucurbita maxima OX=3661 GN=LOC111498894 PE=3 SV=1[more]
A0A6J1H4Z05.0e-0888.24Protein DETOXIFICATION OS=Cucurbita moschata OX=3662 GN=LOC111460097 PE=3 SV=1[more]
A0A067H5R11.5e-0787.50Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g015884mg PE=3 SV=1[more]
V4U2I81.5e-0787.50Protein DETOXIFICATION OS=Citrus clementina OX=85681 GN=CICLE_v10018703mg PE=3 S... [more]
BLAST of MS023514 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00350.11.5e-0976.47MATE efflux family protein [more]
AT4G25640.11.9e-0765.63detoxifying efflux carrier 35 [more]
AT4G25640.21.9e-0765.63detoxifying efflux carrier 35 [more]
AT1G23300.11.6e-0660.61MATE efflux family protein [more]
AT4G21910.21.6e-0661.29MATE efflux family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023514.1MS023514.1mRNA