MS023365 (gene) Bitter gourd (TR) v1

Overview
NameMS023365
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S12, chloroplastic
Locationscaffold378: 423206 .. 423379 (+)
RNA-Seq ExpressionMS023365
SyntenyMS023365
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL
Homology
BLAST of MS023365 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 3.9e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 58

BLAST of MS023365 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDL
Sbjct: 1  MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDL 58

BLAST of MS023365 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDL
Sbjct: 1  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDL 58

BLAST of MS023365 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDL
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDL 136

BLAST of MS023365 vs. NCBI nr
Match: XP_024929966.1 (uncharacterized protein LOC112488761 [Ziziphus jujuba])

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-16
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDL
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDL 58

BLAST of MS023365 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL
Sbjct: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 58

BLAST of MS023365 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDL
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDL 136

BLAST of MS023365 vs. ExPASy TrEMBL
Match: A0A6P6G7D1 (uncharacterized protein LOC112488761 OS=Ziziphus jujuba OX=326968 GN=LOC112488761 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDL
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDL 58

BLAST of MS023365 vs. ExPASy TrEMBL
Match: A0A6P6GKJ1 (uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC112488768 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDL
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDL 58

BLAST of MS023365 vs. ExPASy TrEMBL
Match: A0A6P3YU62 (uncharacterized protein LOC107404780 OS=Ziziphus jujuba OX=326968 GN=LOC107404780 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-16
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDL 59
          MNENVTELV VTL++G+EEG+RFSNEE D MTSKELNEEPYE+KISC VL +G KGDL
Sbjct: 1  MNENVTELVLVTLQNGVEEGKRFSNEENDRMTSKELNEEPYEIKISCMVLQNGIKGDL 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022932068.13.9e-23100.00uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar... [more]
XP_038896566.12.8e-2196.5530S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
XP_038902483.11.4e-2096.5530S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
KAF1876942.12.1e-1684.21hypothetical protein Lal_00033867 [Lupinus albus][more]
XP_024929966.13.5e-1679.31uncharacterized protein LOC112488761 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F0L11.9e-23100.00uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383... [more]
A0A6A5N1Q81.0e-1684.21Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1[more]
A0A6P6G7D11.7e-1679.31uncharacterized protein LOC112488761 OS=Ziziphus jujuba OX=326968 GN=LOC11248876... [more]
A0A6P6GKJ11.7e-1679.31uncharacterized protein LOC112488768 OS=Ziziphus jujuba OX=326968 GN=LOC11248876... [more]
A0A6P3YU621.7e-1679.31uncharacterized protein LOC107404780 OS=Ziziphus jujuba OX=326968 GN=LOC10740478... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023365.1MS023365.1mRNA