MS023353 (gene) Bitter gourd (TR) v1

Overview
NameMS023353
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF21 domain-containing protein
Locationscaffold378: 286809 .. 286969 (+)
RNA-Seq ExpressionMS023353
SyntenyMS023353
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTCTTTGGCATATAGACGTTTAAATACTCGTGAGGTTCTCAAGAAGAAGTGCAGAAGCTGGACTATTTCCCCTTCGATGTGTTGTTTGTTCAAAAGTGAAGTGAATCCTTAGACCACTTATTCGTCCGTTGCTCTTTTGCGGCCCAAGCATGGTTCTTT

mRNA sequence

TGGTCTTTGGCATATAGACGTTTAAATACTCGTGAGGTTCTCAAGAAGAAGTGCAGAAGCTGGACTATTTCCCCTTCGATGTGTTGTTTGTTCAAAAGTAGTGAATCCTTAGACCACTTATTCGTCCGTTGCTCTTTTGCGGCCCAAGCATGGTTCTTT

Coding sequence (CDS)

TGGTCTTTGGCATATAGACGTTTAAATACTCGTGAGGTTCTCAAGAAGAAGTGCAGAAGCTGGACTATTTCCCCTTCGATGTGTTGTTTGTTCAAAAGTAGTGAATCCTTAGACCACTTATTCGTCCGTTGCTCTTTTGCGGCCCAAGCATGGTTCTTT

Protein sequence

WSLAYRRLNTREVLKKKCRSWTISPSMCCLFKSSESLDHLFVRCSFAAQAWFF
Homology
[Close]
BLAST of MS023353 vs. NCBI nr
Match: TYK07901.1 (DUF21 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 1   WSLAYRRLNTREVLKKKCRSWTISPSMCCL-FKSSESLDHLFVRCSFAAQAW 52
           WSLAYR LNT + ++K  +   +SPSMCCL FK  E+LDHLF+ C+F  +AW
Sbjct: 537 WSLAYRSLNTHKKIQKSFQHTMLSPSMCCLCFKEEETLDHLFLHCTFTKKAW 588

[Close]
BLAST of MS023353 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   WSLAYRRLNTREVLKKKCRSWTISPSMCCL-FKSSESLDHLFVRCSFAAQAW 52
           WSLAYR LN +  L++K  + ++SPS+C L  K +E+ DHLF+ C FA + W
Sbjct: 245 WSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGW 296

[Close]
BLAST of MS023353 vs. ExPASy TrEMBL
Match: A0A5D3C7R2 (DUF21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00110 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.8e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 1   WSLAYRRLNTREVLKKKCRSWTISPSMCCL-FKSSESLDHLFVRCSFAAQAW 52
           WSLAYR LNT + ++K  +   +SPSMCCL FK  E+LDHLF+ C+F  +AW
Sbjct: 537 WSLAYRSLNTHKKIQKSFQHTMLSPSMCCLCFKEEETLDHLFLHCTFTKKAW 588

[Close]
BLAST of MS023353 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   WSLAYRRLNTREVLKKKCRSWTISPSMCCL-FKSSESLDHLFVRCSFAAQAW 52
           WSLAYR LN +  L++K  + ++SPS+C L  K +E+ DHLF+ C FA + W
Sbjct: 245 WSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGW 296

The following BLAST results are available for this feature:
BLAST of MS023353 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK07901.11.6e-0755.77DUF21 domain-containing protein [Cucumis melo var. makuwa][more]
TYK31299.12.2e-0448.08protein FAM91A1 [Cucumis melo var. makuwa][more]
BLAST of MS023353 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS023353 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7R27.8e-0855.77DUF21 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3E6321.1e-0448.08Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059... [more]
BLAST of MS023353 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 1..51
e-value: 2.2E-8
score: 34.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023353.1MS023353.1mRNA