MS023347 (gene) Bitter gourd (TR) v1

Overview


Name	MS023347
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Location	scaffold378: 251458 .. 251721 (-)
RNA-Seq Expression	MS023347
Synteny	MS023347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGAACGACAATGCAGAAAGTGGCTCCGTGGCTGAGCGTTCCACAGTTTGGGGATTGGGAGCAGAAGGGAGGGGTTCCAGACTATTCAGTGGATTTCTCAAAAATAAGGGAAAACAGAAAGCAGCACAAGAGGGATTTGTCGAGGGCAAGCATTGGGAATGAAGAGGAGCTGATCATGGCTTCATCAACCACTCCCTCAACAAACAACACATCCGATAATGCAAACCACCAATTCTCGCCCCAACCTTCTCCAACGGTAAGA

mRNA sequence

GTTGGAACGACAATGCAGAAAGTGGCTCCGTGGCTGAGCGTTCCACAGTTTGGGGATTGGGAGCAGAAGGGAGGGGTTCCAGACTATTCAGTGGATTTCTCAAAAATAAGGGAAAACAGAAAGCAGCACAAGAGGGATTTGTCGAGGGCAAGCATTGGGAATGAAGAGGAGCTGATCATGGCTTCATCAACCACTCCCTCAACAAACAACACATCCGATAATGCAAACCACCAATTCTCGCCCCAACCTTCTCCAACGGTAAGA

Coding sequence (CDS)

GTTGGAACGACAATGCAGAAAGTGGCTCCGTGGCTGAGCGTTCCACAGTTTGGGGATTGGGAGCAGAAGGGAGGGGTTCCAGACTATTCAGTGGATTTCTCAAAAATAAGGGAAAACAGAAAGCAGCACAAGAGGGATTTGTCGAGGGCAAGCATTGGGAATGAAGAGGAGCTGATCATGGCTTCATCAACCACTCCCTCAACAAACAACACATCCGATAATGCAAACCACCAATTCTCGCCCCAACCTTCTCCAACGGTAAGA

Protein sequence

VGTTMQKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTTPSTNNTSDNANHQFSPQPSPTVR

Homology

[Close]

BLAST of MS023347 vs. NCBI nr
Match: XP_022157718.1 (uncharacterized protein LOC111024373 [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 1.1e-37
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT
Sbjct: 6  EKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65

Query: 66 PSTNNTSDNANHQFSPQPSPTVR 89
          PSTNNTSDNANHQFSPQPSPT R
Sbjct: 66 PSTNNTSDNANHQFSPQPSPTTR 88

[Close]

BLAST of MS023347 vs. NCBI nr
Match: XP_004148448.1 (uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical protein Csa_006726 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPW+SVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL MASS T
Sbjct: 6  EKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL-MASSAT 65

Query: 66 PSTNNTSDNA--NHQFSP--QPSPTVR 89
          P+TN    +   NHQ +P    SPT R
Sbjct: 66 PTTNTPHSHVDENHQLNPTNSNSPTTR 91

[Close]

BLAST of MS023347 vs. NCBI nr
Match: XP_038900911.1 (uncharacterized protein LOC120087959 [Benincasa hispida])

HSP 1 Score: 121.7 bits (304), Expect = 3.1e-24
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPW+SVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL M SS T
Sbjct: 6  EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL-MVSSAT 65

Query: 66 PSTNNTSDNA--NHQFSP--QPSPTVR 89
          P+TN    +A  NHQ +P    SPT R
Sbjct: 66 PTTNTPHSHADENHQLNPTNSNSPTTR 91

[Close]

BLAST of MS023347 vs. NCBI nr
Match: XP_008457901.1 (PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 3.5e-23
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPW+SVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL MASS T
Sbjct: 6  EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL-MASSVT 65

Query: 66 PSTNNTSD--NANHQFSP--QPSPTVR 89
          P+TN      + N Q +P    SPT R
Sbjct: 66 PTTNTPHSIVDENRQLNPTNSNSPTTR 91

[Close]

BLAST of MS023347 vs. NCBI nr
Match: XP_022947047.1 (uncharacterized protein LOC111451041 [Cucurbita moschata] >KAG6605291.1 hypothetical protein SDJN03_02608, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035251.1 hypothetical protein SDJN02_02046 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-23
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPWLSVPQFGDWEQK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+ +S+TT
Sbjct: 6  EKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMASSATT 65

Query: 66 PSTNNTSDNANH 78
           +T  T+ +A+H
Sbjct: 66 TTTTTTTTDASH 77

[Close]

BLAST of MS023347 vs. ExPASy TrEMBL
Match: A0A6J1DU25 (uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024373 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.4e-38
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT
Sbjct: 6  EKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65

Query: 66 PSTNNTSDNANHQFSPQPSPTVR 89
          PSTNNTSDNANHQFSPQPSPT R
Sbjct: 66 PSTNNTSDNANHQFSPQPSPTTR 88

[Close]

BLAST of MS023347 vs. ExPASy TrEMBL
Match: A0A0A0LJN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPW+SVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL MASS T
Sbjct: 6  EKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL-MASSAT 65

Query: 66 PSTNNTSDNA--NHQFSP--QPSPTVR 89
          P+TN    +   NHQ +P    SPT R
Sbjct: 66 PTTNTPHSHVDENHQLNPTNSNSPTTR 91

[Close]

BLAST of MS023347 vs. ExPASy TrEMBL
Match: A0A1S3C6Q7 (uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPW+SVPQFGDWEQKG VPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL MASS T
Sbjct: 6  EKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEEL-MASSVT 65

Query: 66 PSTNNTSD--NANHQFSP--QPSPTVR 89
          P+TN      + N Q +P    SPT R
Sbjct: 66 PTTNTPHSIVDENRQLNPTNSNSPTTR 91

[Close]

BLAST of MS023347 vs. ExPASy TrEMBL
Match: A0A6J1G5D0 (uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC111451041 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.8e-23
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPWLSVPQFGDWEQK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+ +S+TT
Sbjct: 6  EKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMASSATT 65

Query: 66 PSTNNTSDNANH 78
           +T  T+ +A+H
Sbjct: 66 TTTTTTTTDASH 77

[Close]

BLAST of MS023347 vs. ExPASy TrEMBL
Match: A0A6J1L3A7 (uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMASSTT 65
          +KVAPWLSVPQFGDWEQK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L MASS T
Sbjct: 6  EKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQL-MASSAT 65

Query: 66 PSTNNTSDNANH 78
           +T  T+ N +H
Sbjct: 66 STTTTTTTNTSH 76

[Close]

BLAST of MS023347 vs. TAIR 10
Match: AT5G09960.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-19
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 6  QKVAPWLSVPQFGDWEQKGG--VPDYSVDFSKIRENRKQHKRDLSRASIGNEEELI---- 65
          +K  PWLSVPQFGDW+QKGG  +PDYS+DF+KIRE RKQ+KRD SRAS+GNEEELI    
Sbjct: 7  EKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELIKPPE 66

Query: 66 MASSTTPSTNNTSDNANHQFSP----QP-SPTVR 89
           A+ST   T   S+N   +FSP    QP SP+ R
Sbjct: 67 SATSTAELTTVQSEN-QREFSPSHHHQPHSPSTR 99

[Close]

BLAST of MS023347 vs. TAIR 10
Match: AT5G64850.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-17
Identity = 49/92 (53.26%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 7  KVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELI------- 66
          K +PWLSVPQFGDW+QKGG  DYS+DFSKIRE RK +KRD SRAS+GNEEELI       
Sbjct: 8  KNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELINPFHDQP 67

Query: 67 -------MASSTTPSTNNTSDNANHQFSPQPS 85
                    +T  S NN  +  +H     PS
Sbjct: 68 PVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPS 99

[Close]

BLAST of MS023347 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-09
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 9  APWLSVPQFGDWEQKG--GVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIMA 62
          A W  VPQFG W+QKG     +YSV FSK R NRKQ+K  +  +S+G+E+EL+++
Sbjct: 8  AAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMVS 62

The following BLAST results are available for this feature:

BLAST of MS023347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157718.1	1.1e-37	97.59	uncharacterized protein LOC111024373 [Momordica charantia]	[more]
XP_004148448.1	3.7e-25	77.01	uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical ...	[more]
XP_038900911.1	3.1e-24	75.86	uncharacterized protein LOC120087959 [Benincasa hispida]	[more]
XP_008457901.1	3.5e-23	74.71	PREDICTED: uncharacterized protein LOC103497474 [Cucumis melo]	[more]
XP_022947047.1	7.8e-23	77.78	uncharacterized protein LOC111451041 [Cucurbita moschata] >KAG6605291.1 hypothet...	[more]

BLAST of MS023347 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU25	5.4e-38	97.59	uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A0A0LJN9	1.8e-25	77.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1	[more]
A0A1S3C6Q7	1.7e-23	74.71	uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=...	[more]
A0A6J1G5D0	3.8e-23	77.78	uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1L3A7	1.9e-22	80.56	uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515...	[more]

BLAST of MS023347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09960.1	1.9e-19	60.64	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G64850.1	1.4e-17	53.26	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G19473.1	2.3e-09	50.91	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..88
None	No IPR available	PANTHER	PTHR33882:SF16	SUBFAMILY NOT NAMED	coord: 7..64
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 7..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023347.1	MS023347.1	mRNA