MS023334 (gene) Bitter gourd (TR) v1

Overview
NameMS023334
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncyclin-C1-1-like
Locationscaffold378: 99046 .. 99150 (-)
RNA-Seq ExpressionMS023334
SyntenyMS023334
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGTCAAAAACATCTCAATTGAGATATTGGATTTCTACGAAAACCACAGAATGATAACAGAGGAGAGAATTGTTACAGCTCTCAGCAAGCTACCTATGAAATCG

mRNA sequence

CAGGTCAAAAACATCTCAATTGAGATATTGGATTTCTACGAAAACCACAGAATGATAACAGAGGAGAGAATTGTTACAGCTCTCAGCAAGCTACCTATGAAATCG

Coding sequence (CDS)

CAGGTCAAAAACATCTCAATTGAGATATTGGATTTCTACGAAAACCACAGAATGATAACAGAGGAGAGAATTGTTACAGCTCTCAGCAAGCTACCTATGAAATCG

Protein sequence

QVKNISIEILDFYENHRMITEERIVTALSKLPMKS
Homology
BLAST of MS023334 vs. NCBI nr
Match: XP_022157727.1 (cyclin-C1-1-like isoform X2 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKNISIEILDFYENHRMITEERIVTALSKLPMKS
Sbjct: 220 VKNISIEILDFYENHRMITEERIVTALSKLPMKS 253

BLAST of MS023334 vs. NCBI nr
Match: XP_031736854.1 (cyclin-C1-1 isoform X3 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKNISIEILDFYENHR ITEERI++AL KLPMKS
Sbjct: 152 VKNISIEILDFYENHRTITEERIISALGKLPMKS 185

BLAST of MS023334 vs. NCBI nr
Match: XP_004147331.1 (cyclin-C1-1 isoform X1 [Cucumis sativus] >KAE8651997.1 hypothetical protein Csa_016928 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKNISIEILDFYENHR ITEERI++AL KLPMKS
Sbjct: 220 VKNISIEILDFYENHRTITEERIISALGKLPMKS 253

BLAST of MS023334 vs. NCBI nr
Match: XP_038901504.1 (cyclin-C1-1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKN SIEILDFYENHRMITE+RI++AL KLPMKS
Sbjct: 189 VKNXSIEILDFYENHRMITEDRIISALGKLPMKS 222

BLAST of MS023334 vs. NCBI nr
Match: XP_038901502.1 (cyclin-C1-1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKN SIEILDFYENHRMITE+RI++AL KLPMKS
Sbjct: 220 VKNXSIEILDFYENHRMITEDRIISALGKLPMKS 253

BLAST of MS023334 vs. ExPASy Swiss-Prot
Match: Q9FJK6 (Cyclin-C1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCC1-1 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 2.3e-05
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMK 35
           VKNI++EILDFYEN+R ITEE++ +A SKL +K
Sbjct: 220 VKNIAMEILDFYENYRTITEEKVNSAFSKLALK 252

BLAST of MS023334 vs. ExPASy Swiss-Prot
Match: Q9FJK7 (Cyclin-C1-2 OS=Arabidopsis thaliana OX=3702 GN=CYCC1-2 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-05
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKL 32
           VKNI++EILDFYENHR+ TEER+  A +KL
Sbjct: 220 VKNIAMEILDFYENHRLFTEERVHAAFNKL 249

BLAST of MS023334 vs. ExPASy TrEMBL
Match: A0A6J1DV87 (cyclin-C1-1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024378 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKNISIEILDFYENHRMITEERIVTALSKLPMKS
Sbjct: 220 VKNISIEILDFYENHRMITEERIVTALSKLPMKS 253

BLAST of MS023334 vs. ExPASy TrEMBL
Match: A0A0A0LN55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G337770 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  QVKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
          QVKNISIEILDFYENHR ITEERI++AL KLPMKS
Sbjct: 18 QVKNISIEILDFYENHRTITEERIISALGKLPMKS 52

BLAST of MS023334 vs. ExPASy TrEMBL
Match: A0A1S3CDQ3 (cyclin-C1-1-like OS=Cucumis melo OX=3656 GN=LOC103499578 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.7e-07
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMKS 36
           VKNISIEILDFYENHR ITEERI++AL KLP+KS
Sbjct: 235 VKNISIEILDFYENHRTITEERIISALGKLPLKS 268

BLAST of MS023334 vs. ExPASy TrEMBL
Match: A0A6J1I4M9 (cyclin-C1-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469599 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-06
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMK 35
           VKNISIEILDFYENHRMITEERI++AL+KL MK
Sbjct: 220 VKNISIEILDFYENHRMITEERILSALNKLSMK 252

BLAST of MS023334 vs. ExPASy TrEMBL
Match: A0A6J1I6C7 (cyclin-C1-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469599 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-06
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMK 35
           VKNISIEILDFYENHRMITEERI++AL+KL MK
Sbjct: 152 VKNISIEILDFYENHRMITEERILSALNKLSMK 184

BLAST of MS023334 vs. TAIR 10
Match: AT5G48640.1 (Cyclin family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-06
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKLPMK 35
           VKNI++EILDFYEN+R ITEE++ +A SKL +K
Sbjct: 220 VKNIAMEILDFYENYRTITEEKVNSAFSKLALK 252

BLAST of MS023334 vs. TAIR 10
Match: AT5G48630.1 (Cyclin family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-06
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKL 32
           VKNI++EILDFYENHR+ TEER+  A +KL
Sbjct: 220 VKNIAMEILDFYENHRLFTEERVHAAFNKL 249

BLAST of MS023334 vs. TAIR 10
Match: AT5G48630.2 (Cyclin family protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-06
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 2   VKNISIEILDFYENHRMITEERIVTALSKL 32
           VKNI++EILDFYENHR+ TEER+  A +KL
Sbjct: 223 VKNIAMEILDFYENHRLFTEERVHAAFNKL 252

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157727.11.6e-08100.00cyclin-C1-1-like isoform X2 [Momordica charantia][more]
XP_031736854.19.0e-0788.24cyclin-C1-1 isoform X3 [Cucumis sativus][more]
XP_004147331.19.0e-0788.24cyclin-C1-1 isoform X1 [Cucumis sativus] >KAE8651997.1 hypothetical protein Csa_... [more]
XP_038901504.11.5e-0685.29cyclin-C1-1-like isoform X2 [Benincasa hispida][more]
XP_038901502.11.5e-0685.29cyclin-C1-1-like isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q9FJK62.3e-0566.67Cyclin-C1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCC1-1 PE=2 SV=2[more]
Q9FJK73.0e-0570.00Cyclin-C1-2 OS=Arabidopsis thaliana OX=3702 GN=CYCC1-2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1DV878.0e-09100.00cyclin-C1-1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024378 PE=3 ... [more]
A0A0A0LN558.8e-0888.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G337770 PE=4 SV=1[more]
A0A1S3CDQ39.7e-0785.29cyclin-C1-1-like OS=Cucumis melo OX=3656 GN=LOC103499578 PE=3 SV=1[more]
A0A6J1I4M92.8e-0687.88cyclin-C1-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469599 PE=3 SV=... [more]
A0A6J1I6C72.8e-0687.88cyclin-C1-2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469599 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT5G48640.11.6e-0666.67Cyclin family protein [more]
AT5G48630.12.1e-0670.00Cyclin family protein [more]
AT5G48630.22.1e-0670.00Cyclin family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023334.1MS023334.1mRNA