MS023271 (gene) Bitter gourd (TR) v1

Overview
NameMS023271
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold78: 1597004 .. 1597552 (-)
RNA-Seq ExpressionMS023271
SyntenyMS023271
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCTTTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTGAGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAACATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTATTTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT

mRNA sequence

AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCTTTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTGAGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAACATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTATTTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT

Coding sequence (CDS)

AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCTTTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTGAGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAACATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTATTTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT

Protein sequence

SFSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDRSEWCSFSDLFPNYSSSIIYSHWEAFLSL
Homology
BLAST of MS023271 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 5.5e-39
Identity = 88/192 (45.83%), Postives = 116/192 (60.42%), Query Frame = 0

Query: 2   FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
           ++V SL +HLT   PL K +FS +WK+  P++VNIL WI+L G LN AE LQ+K  T  L
Sbjct: 124 YTVKSLKNHLTPFSPLEKPIFSTIWKTKSPRRVNILIWIMLFGQLNVAEVLQKKQPTPSL 183

Query: 62  QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
            P+VC  C  +SE   H+FF CP++S CW+ L   FNL   L  D KSN+ QL     S 
Sbjct: 184 SPTVCPFCLHHSEVSLHLFFTCPYSSWCWNKLLCFFNLPLTLCNDFKSNVFQLLARPTSH 243

Query: 122 PKAQSLWVNAIKATISELWFERNQRIFHDK-----------KKDRSEWCSFSDLFPNYSS 181
              + LW NA+KA +++LWFERNQRIF++K           ++  S WC  SD F  YS 
Sbjct: 244 KSTRLLWCNAVKALLADLWFERNQRIFYNKATSCQDRLEAARRQASSWCLLSDPFRAYSL 303

Query: 182 SIIYSHWEAFLS 183
           S    +WEAF+S
Sbjct: 304 SDFNLNWEAFIS 315

BLAST of MS023271 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-34
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 0

Query: 17  LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQ 76
           +PK  F+ LWK+  P++VN+  WIL  G LNTA+ +Q+K  +  L PS C LC  + E  
Sbjct: 24  MPKEFFAALWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDH 83

Query: 77  DHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKAT 136
           DH+FFHC FAS CW+ LF  FN+     +    N++QL      L  + + LW+N +KA 
Sbjct: 84  DHLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKAL 143

Query: 137 ISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS 183
           +SELWFERN R+F +K++             S WCS  D F ++S S+IY++W AF++
Sbjct: 144 LSELWFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYANWGAFIN 201

BLAST of MS023271 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 0

Query: 2   FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
           FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   +N++E LQ+K +  ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVNSSEILQKK-SPINV 253

Query: 62  QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
            PS+C LC   S+   HIF +CP +S  W  +F LFNL         +++ QL   S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313

Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 181
           PK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373

Query: 182 SSIIYSHWEAFLS 183
              I  +W  FL+
Sbjct: 374 IQDICLNWNVFLN 384

BLAST of MS023271 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-26
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 0

Query: 2   FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
           FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   + ++E LQ+K +  ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVISSEILQKK-SPINV 253

Query: 62  QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
            PS+C LC   S+   HIF +CP +S  W  +F LFNL         +++ QL   S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313

Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 180
           PK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373

BLAST of MS023271 vs. NCBI nr
Match: RVW46830.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 5.9e-17
Identity = 67/193 (34.72%), Postives = 92/193 (47.67%), Query Frame = 0

Query: 1    SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATF 60
            SFSV S    L+K   PL       LW S  P KV  L+W++ +G +NT + LQ +    
Sbjct: 1295 SFSVKSFFYALSKDSNPLVFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYK 1354

Query: 61   HLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSF 120
             L P +C LC  N E+ DH+F HCP     W    +LFNL GV+ V  +S I  +   SF
Sbjct: 1355 ALCPQLCILCKGNGESIDHLFLHCPVTIGLW---HRLFNLVGVIWVPPRS-IEDMLVISF 1414

Query: 121  ----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDL 178
                +  + ++LW  A    I  +W ERN RIF DK +             S W S ++ 
Sbjct: 1415 KGLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTEA 1474

BLAST of MS023271 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 0

Query: 17  LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQ 76
           +PK  F+ LWK+  P++VN+  WIL  G LNTA+ +Q+K  +  L PS C LC  + E  
Sbjct: 24  MPKEFFAALWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDH 83

Query: 77  DHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKAT 136
           DH+FFHC FAS CW+ LF  FN+     +    N++QL      L  + + LW+N +KA 
Sbjct: 84  DHLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKAL 143

Query: 137 ISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS 183
           +SELWFERN R+F +K++             S WCS  D F ++S S+IY++W AF++
Sbjct: 144 LSELWFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYANWGAFIN 201

BLAST of MS023271 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.2e-28
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 0

Query: 2   FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
           FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   +N++E LQ+K +  ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVNSSEILQKK-SPINV 253

Query: 62  QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
            PS+C LC   S+   HIF +CP +S  W  +F LFNL         +++ QL   S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313

Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 181
           PK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373

Query: 182 SSIIYSHWEAFLS 183
              I  +W  FL+
Sbjct: 374 IQDICLNWNVFLN 384

BLAST of MS023271 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 0

Query: 2   FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
           FS  SL +HL    P+ K LFS + +S  P+++NIL WI++   + ++E LQ+K +  ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVISSEILQKK-SPINV 253

Query: 62  QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
            PS+C LC   S+   HIF +CP +S  W  +F LFNL         +++ QL   S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313

Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 180
           PK  + +W    KA + E+W ERNQRIFHDK + R+E           WCS    F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373

BLAST of MS023271 vs. ExPASy TrEMBL
Match: A0A438EGK2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_661 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 67/193 (34.72%), Postives = 92/193 (47.67%), Query Frame = 0

Query: 1    SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATF 60
            SFSV S    L+K   PL       LW S  P KV  L+W++ +G +NT + LQ +    
Sbjct: 1295 SFSVKSFFYALSKDSNPLVFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYK 1354

Query: 61   HLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSF 120
             L P +C LC  N E+ DH+F HCP     W    +LFNL GV+ V  +S I  +   SF
Sbjct: 1355 ALCPQLCILCKGNGESIDHLFLHCPVTIGLW---HRLFNLVGVIWVPPRS-IEDMLVISF 1414

Query: 121  ----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDL 178
                +  + ++LW  A    I  +W ERN RIF DK +             S W S ++ 
Sbjct: 1415 KGLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTEA 1474

BLAST of MS023271 vs. ExPASy TrEMBL
Match: A5BY18 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_041975 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 68/193 (35.23%), Postives = 91/193 (47.15%), Query Frame = 0

Query: 1   SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATF 60
           SFSV S    L+K   PL       LW S  P KV  L+W++ +G +NT + LQ +    
Sbjct: 123 SFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYK 182

Query: 61  HLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSF 120
            L P  C LC  N E+ DH+F HCP     W    +LFNL GV+ V  +S I  +   SF
Sbjct: 183 ALCPQWCILCKGNGESIDHLFLHCPVTIGLW---HRLFNLVGVIWVPPRS-IEDMLVISF 242

Query: 121 ----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDL 178
               +L + + LW  A    I  +W ERN RIF DK +             S W S ++ 
Sbjct: 243 KGLGNLVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEA 302

BLAST of MS023271 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 42.0 bits (97), Expect = 6.1e-04
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 0

Query: 63  PSVCFLCYSNSETQDHIFFHCPFASSCWS 92
           PS+C LC +  ET+ H+FF CPF+   WS
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVWS 309

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903695.15.5e-3945.83uncharacterized protein LOC120090219 [Benincasa hispida][more]
XP_022153214.12.4e-3441.57uncharacterized protein LOC111020765 [Momordica charantia][more]
TYK21876.11.3e-2738.86hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa][more]
KAA0035739.17.0e-2638.42hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa][more]
RVW46830.15.9e-1734.72putative ribonuclease H protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DIE21.2e-3441.57uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5D3DE606.2e-2838.86zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7T2Y03.4e-2638.42zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A438EGK22.9e-1734.72Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_661 P... [more]
A5BY182.9e-1735.23Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
Match NameE-valueIdentityDescription
AT1G45063.16.1e-0451.72copper ion binding;electron carriers [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 2..90
e-value: 3.1E-17
score: 63.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023271.1MS023271.1mRNA