Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCTTTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTGAGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAACATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTATTTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT
mRNA sequence
AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCTTTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTGAGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAACATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTATTTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT
Coding sequence (CDS)
AGTTTTTCAGTAAACTCTTTACACTCTCATCTTACAAAAGGGATCCCTCTTCCAAAAGCTTTATTCTCGGGTCTGTGGAAATCTTCTTGCCCAAAAAAGGTTAATATTCTTTCTTGGATTCTCCTAAATGGGCATTTGAATACAGCAGAAACTTTGCAAAGAAAGATGGCCACCTTCCATTTACAGCCTTCGGTCTGTTTCCTTTGTTATTCTAACAGTGAGACACAAGATCATATCTTCTTCCATTGTCCTTTTGCATCAAGCTGCTGGTCATCTCTTTTCCAGCTGTTTAATTTGTCTGGGGTCTTATCGGTTGACACCAAAAGCAACATTCATCAGCTATTCTTTTGTTCTTTCTCCCTCCCGAAGGCCCAATCTCTTTGGGTTAATGCTATCAAAGCCACTATTTCGGAGTTATGGTTTGAAAGGAACCAACGTATTTTCCATGACAAGAAGAAAGATCGCTCCGAATGGTGTTCCTTCTCGGATTTGTTCCCAAACTATTCTTCATCCATTATTTACAGCCATTGGGAAGCTTTTCTTTCTCTT
Protein sequence
SFSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDRSEWCSFSDLFPNYSSSIIYSHWEAFLSL
Homology
BLAST of MS023271 vs. NCBI nr
Match:
XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])
HSP 1 Score: 171.8 bits (434), Expect = 5.5e-39
Identity = 88/192 (45.83%), Postives = 116/192 (60.42%), Query Frame = 0
Query: 2 FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
++V SL +HLT PL K +FS +WK+ P++VNIL WI+L G LN AE LQ+K T L
Sbjct: 124 YTVKSLKNHLTPFSPLEKPIFSTIWKTKSPRRVNILIWIMLFGQLNVAEVLQKKQPTPSL 183
Query: 62 QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
P+VC C +SE H+FF CP++S CW+ L FNL L D KSN+ QL S
Sbjct: 184 SPTVCPFCLHHSEVSLHLFFTCPYSSWCWNKLLCFFNLPLTLCNDFKSNVFQLLARPTSH 243
Query: 122 PKAQSLWVNAIKATISELWFERNQRIFHDK-----------KKDRSEWCSFSDLFPNYSS 181
+ LW NA+KA +++LWFERNQRIF++K ++ S WC SD F YS
Sbjct: 244 KSTRLLWCNAVKALLADLWFERNQRIFYNKATSCQDRLEAARRQASSWCLLSDPFRAYSL 303
Query: 182 SIIYSHWEAFLS 183
S +WEAF+S
Sbjct: 304 SDFNLNWEAFIS 315
BLAST of MS023271 vs. NCBI nr
Match:
XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])
HSP 1 Score: 156.4 bits (394), Expect = 2.4e-34
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 0
Query: 17 LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQ 76
+PK F+ LWK+ P++VN+ WIL G LNTA+ +Q+K + L PS C LC + E
Sbjct: 24 MPKEFFAALWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDH 83
Query: 77 DHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKAT 136
DH+FFHC FAS CW+ LF FN+ + N++QL L + + LW+N +KA
Sbjct: 84 DHLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKAL 143
Query: 137 ISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS 183
+SELWFERN R+F +K++ S WCS D F ++S S+IY++W AF++
Sbjct: 144 LSELWFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYANWGAFIN 201
BLAST of MS023271 vs. NCBI nr
Match:
TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])
HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 0
Query: 2 FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
FS SL +HL P+ K LFS + +S P+++NIL WI++ +N++E LQ+K + ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVNSSEILQKK-SPINV 253
Query: 62 QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
PS+C LC S+ HIF +CP +S W +F LFNL +++ QL S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313
Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 181
PK + +W KA + E+W ERNQRIFHDK + R+E WCS F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373
Query: 182 SSIIYSHWEAFLS 183
I +W FL+
Sbjct: 374 IQDICLNWNVFLN 384
BLAST of MS023271 vs. NCBI nr
Match:
KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 128.3 bits (321), Expect = 7.0e-26
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 0
Query: 2 FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
FS SL +HL P+ K LFS + +S P+++NIL WI++ + ++E LQ+K + ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVISSEILQKK-SPINV 253
Query: 62 QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
PS+C LC S+ HIF +CP +S W +F LFNL +++ QL S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313
Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 180
PK + +W KA + E+W ERNQRIFHDK + R+E WCS F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373
BLAST of MS023271 vs. NCBI nr
Match:
RVW46830.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 98.6 bits (244), Expect = 5.9e-17
Identity = 67/193 (34.72%), Postives = 92/193 (47.67%), Query Frame = 0
Query: 1 SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATF 60
SFSV S L+K PL LW S P KV L+W++ +G +NT + LQ +
Sbjct: 1295 SFSVKSFFYALSKDSNPLVFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYK 1354
Query: 61 HLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSF 120
L P +C LC N E+ DH+F HCP W +LFNL GV+ V +S I + SF
Sbjct: 1355 ALCPQLCILCKGNGESIDHLFLHCPVTIGLW---HRLFNLVGVIWVPPRS-IEDMLVISF 1414
Query: 121 ----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDL 178
+ + ++LW A I +W ERN RIF DK + S W S ++
Sbjct: 1415 KGLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTEA 1474
BLAST of MS023271 vs. ExPASy TrEMBL
Match:
A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 0
Query: 17 LPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHLQPSVCFLCYSNSETQ 76
+PK F+ LWK+ P++VN+ WIL G LNTA+ +Q+K + L PS C LC + E
Sbjct: 24 MPKEFFAALWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDH 83
Query: 77 DHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSLPKA-QSLWVNAIKAT 136
DH+FFHC FAS CW+ LF FN+ + N++QL L + + LW+N +KA
Sbjct: 84 DHLFFHCYFASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKAL 143
Query: 137 ISELWFERNQRIFHDKKK-----------DRSEWCSFSDLFPNYSSSIIYSHWEAFLS 183
+SELWFERN R+F +K++ S WCS D F ++S S+IY++W AF++
Sbjct: 144 LSELWFERNSRLFEEKRRLFDESFYSAKFKASLWCSLVDSFLHHSPSMIYANWGAFIN 201
BLAST of MS023271 vs. ExPASy TrEMBL
Match:
A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 6.2e-28
Identity = 75/193 (38.86%), Postives = 108/193 (55.96%), Query Frame = 0
Query: 2 FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
FS SL +HL P+ K LFS + +S P+++NIL WI++ +N++E LQ+K + ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVNSSEILQKK-SPINV 253
Query: 62 QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
PS+C LC S+ HIF +CP +S W +F LFNL +++ QL S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313
Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 181
PK + +W KA + E+W ERNQRIFHDK + R+E WCS F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373
Query: 182 SSIIYSHWEAFLS 183
I +W FL+
Sbjct: 374 IQDICLNWNVFLN 384
BLAST of MS023271 vs. ExPASy TrEMBL
Match:
A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 0
Query: 2 FSVNSLHSHLTKGIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATFHL 61
FS SL +HL P+ K LFS + +S P+++NIL WI++ + ++E LQ+K + ++
Sbjct: 194 FSDKSLSTHLKTASPMDKRLFSAILQSGSPRRINILIWIMVFRFVISSEILQKK-SPINV 253
Query: 62 QPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSFSL 121
PS+C LC S+ HIF +CP +S W +F LFNL +++ QL S +L
Sbjct: 254 SPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLSASVIQLLSGS-NL 313
Query: 122 PKA-QSLWVNAIKATISELWFERNQRIFHDKKKDRSE-----------WCSFSDLFPNYS 180
PK + +W KA + E+W ERNQRIFHDK + R+E WCS F NYS
Sbjct: 314 PKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAAWCSLRKEFVNYS 373
BLAST of MS023271 vs. ExPASy TrEMBL
Match:
A0A438EGK2 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_661 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 67/193 (34.72%), Postives = 92/193 (47.67%), Query Frame = 0
Query: 1 SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATF 60
SFSV S L+K PL LW S P KV L+W++ +G +NT + LQ +
Sbjct: 1295 SFSVKSFFYALSKDSNPLVFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYK 1354
Query: 61 HLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSF 120
L P +C LC N E+ DH+F HCP W +LFNL GV+ V +S I + SF
Sbjct: 1355 ALCPQLCILCKGNGESIDHLFLHCPVTIGLW---HRLFNLVGVIWVPPRS-IEDMLVISF 1414
Query: 121 ----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDL 178
+ + ++LW A I +W ERN RIF DK + S W S ++
Sbjct: 1415 KGLGNSLRGKTLWQIACLTLIWMVWQERNNRIFEDKGRTEEMVWDLIRFYSSLWASCTEA 1474
BLAST of MS023271 vs. ExPASy TrEMBL
Match:
A5BY18 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_041975 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 68/193 (35.23%), Postives = 91/193 (47.15%), Query Frame = 0
Query: 1 SFSVNSLHSHLTK-GIPLPKALFSGLWKSSCPKKVNILSWILLNGHLNTAETLQRKMATF 60
SFSV S L+K PL LW S P KV L+W++ +G +NT + LQ +
Sbjct: 123 SFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYK 182
Query: 61 HLQPSVCFLCYSNSETQDHIFFHCPFASSCWSSLFQLFNLSGVLSVDTKSNIHQLFFCSF 120
L P C LC N E+ DH+F HCP W +LFNL GV+ V +S I + SF
Sbjct: 183 ALCPQWCILCKGNGESIDHLFLHCPVTIGLW---HRLFNLVGVIWVPPRS-IEDMLVISF 242
Query: 121 ----SLPKAQSLWVNAIKATISELWFERNQRIFHDKKKDR-----------SEWCSFSDL 178
+L + + LW A I +W ERN RIF DK + S W S ++
Sbjct: 243 KGLGNLVRGKILWQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEA 302
BLAST of MS023271 vs. TAIR 10
Match:
AT1G45063.1 (copper ion binding;electron carriers )
HSP 1 Score: 42.0 bits (97), Expect = 6.1e-04
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 0
Query: 63 PSVCFLCYSNSETQDHIFFHCPFASSCWS 92
PS+C LC + ET+ H+FF CPF+ WS
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVWS 309
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038903695.1 | 5.5e-39 | 45.83 | uncharacterized protein LOC120090219 [Benincasa hispida] | [more] |
XP_022153214.1 | 2.4e-34 | 41.57 | uncharacterized protein LOC111020765 [Momordica charantia] | [more] |
TYK21876.1 | 1.3e-27 | 38.86 | hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa] | [more] |
KAA0035739.1 | 7.0e-26 | 38.42 | hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa] | [more] |
RVW46830.1 | 5.9e-17 | 34.72 | putative ribonuclease H protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DIE2 | 1.2e-34 | 41.57 | uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A5D3DE60 | 6.2e-28 | 38.86 | zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A5A7T2Y0 | 3.4e-26 | 38.42 | zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... | [more] |
A0A438EGK2 | 2.9e-17 | 34.72 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_661 P... | [more] |
A5BY18 | 2.9e-17 | 35.23 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
Match Name | E-value | Identity | Description | |
AT1G45063.1 | 6.1e-04 | 51.72 | copper ion binding;electron carriers | [more] |