MS023268 (gene) Bitter gourd (TR) v1

Overview
NameMS023268
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold78: 1586192 .. 1586443 (+)
RNA-Seq ExpressionMS023268
SyntenyMS023268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTGAAGTCCAGGAATCATTTATTCTTTGAGTGCTCATTTAGTTCGGAGGTATGGTATGACATGATTGTTTGGGCTGGTTCTTCTGACCGGGTTTTATATTGGTCTACCGAGCTTACTTGTATCTATCACATTAGTGCTAGTAAGTCTGCTTGTCGTCATGTATGGCGCTTGACATGGACTTCGACTGTTTCTTTTATCTGGAGGAAGCGTAATGCTTCATGCAGGTGGGGTGCGTCAGTTGACTTCTAT

mRNA sequence

GGCTTGAAGTCCAGGAATCATTTATTCTTTGAGTGCTCATTTAGTTCGGAGGTATGGTATGACATGATTGTTTGGGCTGGTTCTTCTGACCGGGTTTTATATTGGTCTACCGAGCTTACTTGTATCTATCACATTAGTGCTAGTAAGTCTGCTTGTCGTCATGTATGGCGCTTGACATGGACTTCGACTGTTTCTTTTATCTGGAGGAAGCGTAATGCTTCATGCAGGTGGGGTGCGTCAGTTGACTTCTAT

Coding sequence (CDS)

GGCTTGAAGTCCAGGAATCATTTATTCTTTGAGTGCTCATTTAGTTCGGAGGTATGGTATGACATGATTGTTTGGGCTGGTTCTTCTGACCGGGTTTTATATTGGTCTACCGAGCTTACTTGTATCTATCACATTAGTGCTAGTAAGTCTGCTTGTCGTCATGTATGGCGCTTGACATGGACTTCGACTGTTTCTTTTATCTGGAGGAAGCGTAATGCTTCATGCAGGTGGGGTGCGTCAGTTGACTTCTAT

Protein sequence

GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTWTSTVSFIWRKRNASCRWGASVDFY
Homology
BLAST of MS023268 vs. NCBI nr
Match: XP_022158861.1 (uncharacterized protein LOC111025324 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           GL+SR+HLF +C +S  VW  MI WAGSS RV YWSTELT I H++   S+ RHVWRL W
Sbjct: 286 GLESRDHLFLDCPYSRAVWAGMISWAGSSHRVSYWSTELTWICHVNVGSSSRRHVWRLAW 345

Query: 61  TSTVSFIWRKRN 73
           T TVS +WR+ N
Sbjct: 346 TLTVSLLWREPN 357

BLAST of MS023268 vs. NCBI nr
Match: XP_031745517.1 (uncharacterized protein LOC116405878 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 3   KSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTWTS 62
           +SR+HLFF C F  E+W  +++   SS R  YW  EL+ IY+    KS  R +WRL W +
Sbjct: 114 ESRDHLFFSCHFGWEIWSRILLLKSSSHRTGYWGVELSWIYNQGIGKSVRRKLWRLLWCA 173

Query: 63  TVSFIWRKRNASCRWGA 80
           T+ FIW++RN     G+
Sbjct: 174 TIYFIWQERNHRLHGGS 190

BLAST of MS023268 vs. NCBI nr
Match: XP_031745548.1 (uncharacterized protein LOC116405965 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 3   KSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTWTS 62
           +SR+HLFF C F  E+W  +++   SS R+ YW   L+ IY+    KS  R +WRL W +
Sbjct: 153 ESRDHLFFSCHFGWEIWSRILLLMSSSHRIGYWGVGLSWIYNQGIGKSVRRKLWRLLWCA 212

Query: 63  TVSFIWRKRNASCRWGA 80
           T+ FIW++RN     GA
Sbjct: 213 TIYFIWQERNHRLHGGA 229

BLAST of MS023268 vs. NCBI nr
Match: XP_008452126.1 (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-10
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           G++SR+HLFF C F  +VW  ++    SS R+ +W  EL+ I H    K   R +WR+ W
Sbjct: 847 GMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLW 906

Query: 61  TSTVSFIWRKRNASCRWGASVD 83
            +T+ FIW +RN     G + D
Sbjct: 907 CATIYFIWNERNHRLHGGQAPD 928

BLAST of MS023268 vs. NCBI nr
Match: KAA0057642.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-10
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           G++SR+HLFF C F  +VW  ++    SS R+ +W  EL+ I H    K   R +WR+ W
Sbjct: 914 GMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLW 973

Query: 61  TSTVSFIWRKRNASCRWGASVD 83
            +T+ FIW +RN     G + D
Sbjct: 974 CATIYFIWNERNHRLHGGQAPD 995

BLAST of MS023268 vs. ExPASy TrEMBL
Match: A0A6J1E271 (uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025324 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           GL+SR+HLF +C +S  VW  MI WAGSS RV YWSTELT I H++   S+ RHVWRL W
Sbjct: 286 GLESRDHLFLDCPYSRAVWAGMISWAGSSHRVSYWSTELTWICHVNVGSSSRRHVWRLAW 345

Query: 61  TSTVSFIWRKRN 73
           T TVS +WR+ N
Sbjct: 346 TLTVSLLWREPN 357

BLAST of MS023268 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           G++SR+HLFF C F  +VW  ++    SS R+ +W  EL+ I H    K   R +WR+ W
Sbjct: 914 GMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLW 973

Query: 61  TSTVSFIWRKRNASCRWGASVD 83
            +T+ FIW +RN     G + D
Sbjct: 974 CATIYFIWNERNHRLHGGQAPD 995

BLAST of MS023268 vs. ExPASy TrEMBL
Match: A0A5D3D7P6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00080 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           G++SR+HLFF C F  +VW  ++    SS R+ +W  EL+ I H    K   R +WR+ W
Sbjct: 895 GMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLW 954

Query: 61  TSTVSFIWRKRNASCRWGASVD 83
            +T+ FIW +RN     G + D
Sbjct: 955 CATIYFIWNERNHRLHGGQAPD 976

BLAST of MS023268 vs. ExPASy TrEMBL
Match: A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           G++SR+HLFF C F  +VW  ++    SS R+ +W  EL+ I H    K   R +WR+ W
Sbjct: 847 GMESRDHLFFSCPFGGDVWSRVLRIMASSHRIGHWGVELSWICHQGIRKGVRRKLWRVLW 906

Query: 61  TSTVSFIWRKRNASCRWGASVD 83
            +T+ FIW +RN     G + D
Sbjct: 907 CATIYFIWNERNHRLHGGQAPD 928

BLAST of MS023268 vs. ExPASy TrEMBL
Match: A0A5A7VG93 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00040 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 1   GLKSRNHLFFECSFSSEVWYDMIVWAGSSDRVLYWSTELTCIYHISASKSACRHVWRLTW 60
           G++SR+HLFF C F  +VW  ++    SS R+  W  EL+ I+H    K   R +WR+ W
Sbjct: 108 GVESRDHLFFSCPFGGDVWSRVLRVMASSYRIGNWGVELSWIFHQGIGKGVRRKLWRVLW 167

Query: 61  TSTVSFIWRKRNASCRWGASVD 83
            +T+ FIW +RN     G + D
Sbjct: 168 CATIYFIWNERNHRLHGGQARD 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158861.14.2e-1861.11uncharacterized protein LOC111025324 [Momordica charantia][more]
XP_031745517.11.4e-1042.86uncharacterized protein LOC116405878 [Cucumis sativus][more]
XP_031745548.11.9e-1042.86uncharacterized protein LOC116405965 [Cucumis sativus][more]
XP_008452126.14.2e-1039.02PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
KAA0057642.14.2e-1039.02reverse transcriptase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E2712.0e-1861.11uncharacterized protein LOC111025324 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7UP652.0e-1039.02Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... [more]
A0A5D3D7P62.0e-1039.02Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41... [more]
A0A1S3BSI82.0e-1039.02uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=... [more]
A0A5A7VG933.5e-1039.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023268.1MS023268.1mRNA