MS023249 (gene) Bitter gourd (TR) v1

Overview
NameMS023249
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein At3g07870-like
Locationscaffold78: 1438339 .. 1438530 (+)
RNA-Seq ExpressionMS023249
SyntenyMS023249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGTAAAGCATGGAACAATCTGGTCTTAACTTGTAAGTTTCATTCTCCCATCTCAATTTCCAACCACTTCTTTTTTGCCCGTTGTTATCAGTCGTTTGATCGCAATCTCCATTGCATAACCTTGGATTCTAAACATATGAGAGAGATGAGCAGTGTTGCCAAATTTAGTTTCCATCCTGATTTTTTTTCT

mRNA sequence

GTGTGTAAAGCATGGAACAATCTGGTCTTAACTTGTAAGTTTCATTCTCCCATCTCAATTTCCAACCACTTCTTTTTTGCCCGTTGTTATCAGTCGTTTGATCGCAATCTCCATTGCATAACCTTGGATTCTAAACATATGAGAGAGATGAGCAGTGTTGCCAAATTTAGTTTCCATCCTGATTTTTTTTCT

Coding sequence (CDS)

GTGTGTAAAGCATGGAACAATCTGGTCTTAACTTGTAAGTTTCATTCTCCCATCTCAATTTCCAACCACTTCTTTTTTGCCCGTTGTTATCAGTCGTTTGATCGCAATCTCCATTGCATAACCTTGGATTCTAAACATATGAGAGAGATGAGCAGTGTTGCCAAATTTAGTTTCCATCCTGATTTTTTTTCT

Protein sequence

VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHPDFFS
Homology
[Close]
BLAST of MS023249 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 8.4e-11
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           V   WNNLVL+CKF   ISISN  FFA  Y   DRNLHC+ LD +H+  MS+VA F+FHP
Sbjct: 39  VSATWNNLVLSCKFDPSISISN-LFFAHFYSCRDRNLHCVDLDPQHLEGMSTVASFTFHP 98

Query: 61  DFFS 65
           +  S
Sbjct: 99  NVSS 101

[Close]
BLAST of MS023249 vs. NCBI nr
Match: XP_022143297.1 (F-box/kelch-repeat protein At3g06240-like [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           VCKAW+++VLT K H  ISISNH F A  Y  FD NL C+ LD K++  M +VAKF FHP
Sbjct: 40  VCKAWSDVVLTGKLHPSISISNHLFLAHDY-LFDPNLQCLHLDPKYLGGMCNVAKFRFHP 99

Query: 61  DF 63
           DF
Sbjct: 100 DF 100

[Close]
BLAST of MS023249 vs. NCBI nr
Match: XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.5e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           V + WNNL+ +CKF    SI  H FFAR Y S  RNLHC+  D +H+  MS VA F+FHP
Sbjct: 38  VSRTWNNLISSCKFDPSTSI-YHLFFARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHP 97

Query: 61  DFFS 65
           DF S
Sbjct: 98  DFCS 100

[Close]
BLAST of MS023249 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           V   WNNL+ +CKF   ISIS H FFAR Y S   NLHC+  D +H   MS+VA F+FHP
Sbjct: 39  VSTTWNNLISSCKFDPSISIS-HLFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHP 98

Query: 61  DFFS 65
           D  S
Sbjct: 99  DLSS 101

[Close]
BLAST of MS023249 vs. NCBI nr
Match: XP_022132431.1 (F-box protein At3g07870-like [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-09
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           VCKAWNN +LTCK HS IS SN F+    + S    L C+ LD KH+  +SS+  FSFHP
Sbjct: 95  VCKAWNNFILTCKLHSSISTSNLFY---AHISPFNKLCCVDLDPKHLGVVSSLGSFSFHP 154

Query: 61  DFFS 65
           D FS
Sbjct: 155 DLFS 155

[Close]
BLAST of MS023249 vs. ExPASy TrEMBL
Match: A0A6J1CQE2 (F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC111013202 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.0e-11
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           VCKAW+++VLT K H  ISISNH F A  Y  FD NL C+ LD K++  M +VAKF FHP
Sbjct: 40  VCKAWSDVVLTGKLHPSISISNHLFLAHDY-LFDPNLQCLHLDPKYLGGMCNVAKFRFHP 99

Query: 61  DF 63
           DF
Sbjct: 100 DF 100

[Close]
BLAST of MS023249 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           V + WNNL+ +CKF    SI  H FFAR Y S  RNLHC+  D +H+  MS VA F+FHP
Sbjct: 38  VSRTWNNLISSCKFDPSTSI-YHLFFARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHP 97

Query: 61  DFFS 65
           DF S
Sbjct: 98  DFCS 100

[Close]
BLAST of MS023249 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           V + WNNL+ +CKF    SI  H FFAR Y S  RNLHC+  D +H+  MS VA F+FHP
Sbjct: 38  VSRTWNNLISSCKFDPSTSI-YHLFFARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHP 97

Query: 61  DFFS 65
           DF S
Sbjct: 98  DFCS 100

[Close]
BLAST of MS023249 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-10
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           V   WNNL+ +CKF   ISIS H FFAR Y S   NLHC+  D +H   MS+VA F+FHP
Sbjct: 39  VSTTWNNLISSCKFDPSISIS-HLFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHP 98

Query: 61  DFFS 65
           D  S
Sbjct: 99  DLSS 101

[Close]
BLAST of MS023249 vs. ExPASy TrEMBL
Match: A0A6J1BS93 (F-box protein At3g07870-like OS=Momordica charantia OX=3673 GN=LOC111005288 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 1   VCKAWNNLVLTCKFHSPISISNHFFFARCYQSFDRNLHCITLDSKHMREMSSVAKFSFHP 60
           VCKAWNN +LTCK HS IS SN F+    + S    L C+ LD KH+  +SS+  FSFHP
Sbjct: 95  VCKAWNNFILTCKLHSSISTSNLFY---AHISPFNKLCCVDLDPKHLGVVSSLGSFSFHP 154

Query: 61  DFFS 65
           D FS
Sbjct: 155 DLFS 155

The following BLAST results are available for this feature:
BLAST of MS023249 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880514.18.4e-1157.81putative F-box protein At1g46984 [Benincasa hispida][more]
XP_022143297.11.4e-1059.68F-box/kelch-repeat protein At3g06240-like [Momordica charantia][more]
XP_008450717.15.5e-1054.69PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ... [more]
XP_004135796.11.6e-0954.69putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot... [more]
XP_022132431.12.7e-0954.69F-box protein At3g07870-like [Momordica charantia][more]
BLAST of MS023249 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS023249 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQE27.0e-1159.68F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A5D3CIX92.7e-1054.69Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A1S3BQV82.7e-1054.69putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... [more]
A0A0A0M1M57.7e-1054.69F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ... [more]
A0A6J1BS931.3e-0954.69F-box protein At3g07870-like OS=Momordica charantia OX=3673 GN=LOC111005288 PE=4... [more]
BLAST of MS023249 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023249.1MS023249.1mRNA