MS023247 (gene) Bitter gourd (TR) v1

Overview


Name	MS023247
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2
Location	scaffold78: 1432916 .. 1433125 (+)
RNA-Seq Expression	MS023247
Synteny	MS023247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGATGTGTTATGCATCAGAGAAAATGCAATAACAGAAGATCAGCGTGCTATAGTCTTTGTGATTACTTACGATTCTCATAAGGAAAAGTTTCTCGAACTTGAGCAACAACTTCACGTGCCAATTGAGGATAATGTGTTGTTTAATATTGATGACCGAACGCAGTGGAACACAACCTATAACATGTTGATGACGGCTTTTGAAACGAGA

mRNA sequence

GAAGATGTGTTATGCATCAGAGAAAATGCAATAACAGAAGATCAGCGTGCTATAGTCTTTGTGATTACTTACGATTCTCATAAGGAAAAGTTTCTCGAACTTGAGCAACAACTTCACGTGCCAATTGAGGATAATGTGTTGTTTAATATTGATGACCGAACGCAGTGGAACACAACCTATAACATGTTGATGACGGCTTTTGAAACGAGA

Coding sequence (CDS)

GAAGATGTGTTATGCATCAGAGAAAATGCAATAACAGAAGATCAGCGTGCTATAGTCTTTGTGATTACTTACGATTCTCATAAGGAAAAGTTTCTCGAACTTGAGCAACAACTTCACGTGCCAATTGAGGATAATGTGTTGTTTAATATTGATGACCGAACGCAGTGGAACACAACCTATAACATGTTGATGACGGCTTTTGAAACGAGA

Protein sequence

EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTYNMLMTAFETR

Homology

[Close]

BLAST of MS023247 vs. NCBI nr
Match: XP_011655416.1 (zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucumis sativus] >XP_031741275.1 zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucumis sativus] >KAE8652993.1 hypothetical protein Csa_023497 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN IT+ + ++ +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 379 KDVLESGENTITKIRDSVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 438

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 439 HMLVAASEMK 446

[Close]

BLAST of MS023247 vs. NCBI nr
Match: XP_011655423.1 (zinc finger BED domain-containing protein DAYSLEEPER isoform X3 [Cucumis sativus] >XP_031741279.1 zinc finger BED domain-containing protein DAYSLEEPER isoform X3 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN IT+ + ++ +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 353 KDVLESGENTITKIRDSVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 412

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 413 HMLVAASEMK 420

[Close]

BLAST of MS023247 vs. NCBI nr
Match: XP_011655412.1 (zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN IT+ + ++ +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 425 KDVLESGENTITKIRDSVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 484

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 485 HMLVAASEMK 492

[Close]

BLAST of MS023247 vs. NCBI nr
Match: XP_016899814.1 (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN I + +  + +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 379 KDVLESGENTIRKIRDTVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 438

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 439 HMLVAASEMK 446

[Close]

BLAST of MS023247 vs. NCBI nr
Match: XP_016899815.1 (PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 [Cucumis melo] >XP_016899816.1 PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 [Cucumis melo] >KAA0050131.1 zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 [Cucumis melo var. makuwa] >TYK06385.1 zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 6.6e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN I + +  + +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 353 KDVLESGENTIRKIRDTVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 412

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 413 HMLVAASEMK 420

[Close]

BLAST of MS023247 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-07
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   ++ I   + ++  V T +SH+E+F EL++QL VP E   + ++DD+TQWNTTY
Sbjct: 346 KDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEK--VLSLDDQTQWNTTY 405

Query: 61  NMLMTAFETR 71
            ML+ A E +
Sbjct: 406 MMLVAASELK 413

[Close]

BLAST of MS023247 vs. ExPASy TrEMBL
Match: A0A0A0LYS2 (BED-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G229510 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-10
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN IT+ + ++ +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 379 KDVLESGENTITKIRDSVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 438

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 439 HMLVAASEMK 446

[Close]

BLAST of MS023247 vs. ExPASy TrEMBL
Match: A0A1S4DVS1 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990669 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN I + +  + +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 353 KDVLESGENTIRKIRDTVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 412

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 413 HMLVAASEMK 420

[Close]

BLAST of MS023247 vs. ExPASy TrEMBL
Match: A0A5D3C4S1 (Zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN I + +  + +V T DSH+EKFLEL+QQL VP E N+   +DD+TQWNTTY
Sbjct: 353 KDVLESGENTIRKIRDTVKYVTTSDSHEEKFLELKQQLQVPSERNLF--LDDQTQWNTTY 412

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 413 HMLVAASEMK 420

[Close]

BLAST of MS023247 vs. ExPASy TrEMBL
Match: A0A6J1HCM2 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461606 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN I + + ++ +V T DSH+EKFLEL+QQL VP E N++  +DD+ QWNTTY
Sbjct: 354 KDVLSAGENTIRKIRDSVKYVTTSDSHEEKFLELKQQLQVPSERNLV--LDDQMQWNTTY 413

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 414 HMLVAASEMK 421

[Close]

BLAST of MS023247 vs. ExPASy TrEMBL
Match: A0A6J1H8V0 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461606 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-09
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   EN I + + ++ +V T DSH+EKFLEL+QQL VP E N++  +DD+ QWNTTY
Sbjct: 380 KDVLSAGENTIRKIRDSVKYVTTSDSHEEKFLELKQQLQVPSERNLV--LDDQMQWNTTY 439

Query: 61  NMLMTAFETR 71
           +ML+ A E +
Sbjct: 440 HMLVAASEMK 447

[Close]

BLAST of MS023247 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   EDVLCIRENAITEDQRAIVFVITYDSHKEKFLELEQQLHVPIEDNVLFNIDDRTQWNTTY 60
           +DVL   ++ I   + ++  V T +SH+E+F EL++QL VP E   + ++DD+TQWNTTY
Sbjct: 346 KDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEK--VLSLDDQTQWNTTY 405

Query: 61  NMLMTAFETR 71
            ML+ A E +
Sbjct: 406 MMLVAASELK 413

The following BLAST results are available for this feature:

BLAST of MS023247 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655416.1	1.0e-09	54.29	zinc finger BED domain-containing protein DAYSLEEPER isoform X2 [Cucumis sativus...	[more]
XP_011655423.1	1.0e-09	54.29	zinc finger BED domain-containing protein DAYSLEEPER isoform X3 [Cucumis sativus...	[more]
XP_011655412.1	1.0e-09	54.29	zinc finger BED domain-containing protein DAYSLEEPER isoform X1 [Cucumis sativus...	[more]
XP_016899814.1	6.6e-09	52.86	PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 ...	[more]
XP_016899815.1	6.6e-09	52.86	PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 ...	[more]

BLAST of MS023247 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2N5	2.2e-07	42.86	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]

BLAST of MS023247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYS2	4.9e-10	54.29	BED-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G229510 PE...	[more]
A0A1S4DVS1	3.2e-09	52.86	zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Cucumis ...	[more]
A0A5D3C4S1	3.2e-09	52.86	Zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Cucumis ...	[more]
A0A6J1HCM2	3.2e-09	51.43	zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 OS=Cucurbit...	[more]
A0A6J1H8V0	3.2e-09	51.43	zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 OS=Cucurbit...	[more]

BLAST of MS023247 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	1.6e-08	42.86	BED zinc finger ;hAT family dimerisation domain	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023247.1	MS023247.1	mRNA