MS023178 (gene) Bitter gourd (TR) v1

Overview
NameMS023178
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTATA-box-binding protein
Locationscaffold78: 719002 .. 719076 (+)
RNA-Seq ExpressionMS023178
SyntenyMS023178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGTGAGGGAGGAGACGTATACAGCATTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAA

mRNA sequence

CAGGTGAGGGAGGAGACGTATACAGCATTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAA

Coding sequence (CDS)

CAGGTGAGGGAGGAGACGTATACAGCATTTGAGAACATATACCCAGTGCTTACAGAGTTCAGGAAAAACCAGCAA

Protein sequence

QVREETYTAFENIYPVLTEFRKNQQ
Homology
[Close]
BLAST of MS023178 vs. NCBI nr
Match: KAG6484527.1 (hypothetical protein ZIOFF_053046 [Zingiber officinale])

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           QVR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 179 QVRDETYTAFENIYPVLTEFRKNQQ 203

[Close]
BLAST of MS023178 vs. NCBI nr
Match: KZM93622.1 (hypothetical protein DCAR_016867 [Daucus carota subsp. sativus])

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 145 KVREETYTAFENIYPVLTEFRKNQQ 169

[Close]
BLAST of MS023178 vs. NCBI nr
Match: KAG6588117.1 (TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVREETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. NCBI nr
Match: XP_024986276.1 (TATA-box-binding protein-like [Cynara cardunculus var. scolymus])

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVREETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. NCBI nr
Match: XP_019162400.1 (PREDICTED: TATA-box-binding protein-like [Ipomoea nil] >XP_019162401.1 PREDICTED: TATA-box-binding protein-like [Ipomoea nil])

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 178 KVREETYTAFENIYPVLTEFRKNQQ 202

[Close]
BLAST of MS023178 vs. ExPASy Swiss-Prot
Match: P48511 (TATA-box-binding protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.7e-07
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVREETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. ExPASy Swiss-Prot
Match: P26357 (TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-06
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. ExPASy Swiss-Prot
Match: Q42808 (TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-06
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. ExPASy Swiss-Prot
Match: P93348 (TATA-box-binding protein OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-06
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VR+ETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVRDETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. ExPASy Swiss-Prot
Match: Q8W0W4 (TATA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-05
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VR+ETYTAFENIYPVLTEFRK QQ
Sbjct: 179 KVRDETYTAFENIYPVLTEFRKVQQ 203

[Close]
BLAST of MS023178 vs. ExPASy TrEMBL
Match: A0A6J1JDU6 (TATA-box-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111484910 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVREETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. ExPASy TrEMBL
Match: A0A7J6GFX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008980 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 149 KVREETYTAFENIYPVLTEFRKNQQ 173

[Close]
BLAST of MS023178 vs. ExPASy TrEMBL
Match: A0A6J1H9G6 (TATA-box-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111461727 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 176 KVREETYTAFENIYPVLTEFRKNQQ 200

[Close]
BLAST of MS023178 vs. ExPASy TrEMBL
Match: A0A161ZZ09 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016867 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 145 KVREETYTAFENIYPVLTEFRKNQQ 169

[Close]
BLAST of MS023178 vs. ExPASy TrEMBL
Match: A0A5A7UIK5 (TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001180 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           +VREETYTAFENIYPVLTEFRKNQQ
Sbjct: 179 KVREETYTAFENIYPVLTEFRKNQQ 203

[Close]
BLAST of MS023178 vs. TAIR 10
Match: AT1G55520.1 (TATA binding protein 2 )

HSP 1 Score: 45.8 bits (107), Expect = 5.8e-06
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           ++REETYTAFENIYPVL EFRK QQ
Sbjct: 176 KMREETYTAFENIYPVLREFRKVQQ 200

[Close]
BLAST of MS023178 vs. TAIR 10
Match: AT1G55520.2 (TATA binding protein 2 )

HSP 1 Score: 45.8 bits (107), Expect = 5.8e-06
Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           ++REETYTAFENIYPVL EFRK QQ
Sbjct: 176 KMREETYTAFENIYPVLREFRKVQQ 200

[Close]
BLAST of MS023178 vs. TAIR 10
Match: AT3G13445.1 (TATA binding protein 1 )

HSP 1 Score: 43.1 bits (100), Expect = 3.8e-05
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   QVREETYTAFENIYPVLTEFRKNQQ 26
           ++R+ETY AFENIYPVL+EFRK QQ
Sbjct: 176 KMRDETYKAFENIYPVLSEFRKIQQ 200

The following BLAST results are available for this feature:
BLAST of MS023178 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6484527.13.9e-0496.00hypothetical protein ZIOFF_053046 [Zingiber officinale][more]
KZM93622.15.1e-0496.00hypothetical protein DCAR_016867 [Daucus carota subsp. sativus][more]
KAG6588117.15.1e-0496.00TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_024986276.15.1e-0496.00TATA-box-binding protein-like [Cynara cardunculus var. scolymus][more]
XP_019162400.15.1e-0496.00PREDICTED: TATA-box-binding protein-like [Ipomoea nil] >XP_019162401.1 PREDICTED... [more]
BLAST of MS023178 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P485116.7e-0796.00TATA-box-binding protein OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1[more]
P263571.5e-0692.00TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1[more]
Q428081.5e-0692.00TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1[more]
P933481.5e-0692.00TATA-box-binding protein OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
Q8W0W41.6e-0588.00TATA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TBP2 PE=1 SV=... [more]
BLAST of MS023178 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JDU62.5e-0496.00TATA-box-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111484910 PE=3 SV=1[more]
A0A7J6GFX12.5e-0496.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008980 PE=3 SV=1[more]
A0A6J1H9G62.5e-0496.00TATA-box-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111461727 PE=3 SV=1[more]
A0A161ZZ092.5e-0496.00Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016867 ... [more]
A0A5A7UIK52.5e-0496.00TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of MS023178 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55520.15.8e-0684.00TATA binding protein 2 [more]
AT1G55520.25.8e-0684.00TATA binding protein 2 [more]
AT3G13445.13.8e-0576.00TATA binding protein 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023178.1MS023178.1mRNA