MS023157 (gene) Bitter gourd (TR) v1

Overview


Name	MS023157
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribulose-bisphosphate carboxylase large chain
Location	scaffold78: 503751 .. 503903 (-)
RNA-Seq Expression	MS023157
Synteny	MS023157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGATTTTGTCTTTTTCGTTAATGGGT

mRNA sequence

ATGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGATTTTGTCTTTTTCGTTAATGGGT

Coding sequence (CDS)

ATGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGATTTTGTCTTTTTCGTTAATGGGT

Protein sequence

MSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLILSFSLMG

Homology

[Close]

BLAST of MS023157 vs. NCBI nr
Match: THG14067.1 (hypothetical protein TEA_017317 [Camellia sinensis var. sinensis])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLIL 46
          +SGVRIPPRPQPA+KGRTFPSGG+KIMIGIAD KL NLG   L L
Sbjct: 44 VSGVRIPPRPQPAQKGRTFPSGGKKIMIGIADAKLLNLGPSYLFL 88

[Close]

BLAST of MS023157 vs. NCBI nr
Match: KAG5070517.1 (hypothetical protein JHK85_002894 [Glycine max])

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 14  KKGRTFPSGGRKIMIGIADPKLWNL 39
           KKGR FPSGGRKIMIG+ADPKLWNL
Sbjct: 101 KKGRIFPSGGRKIMIGLADPKLWNL 125

[Close]

BLAST of MS023157 vs. NCBI nr
Match: KAG5103944.1 (hypothetical protein JHK82_040914 [Glycine max])

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 14  KKGRTFPSGGRKIMIGIADPKLWNL 39
           KKGR FPSGGRKIMIG+ADPKLWNL
Sbjct: 101 KKGRIFPSGGRKIMIGLADPKLWNL 125

[Close]

BLAST of MS023157 vs. NCBI nr
Match: KAG4909451.1 (hypothetical protein JHK87_055567 [Glycine soja])

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 14 KKGRTFPSGGRKIMIGIADPKLWNL 39
          KKGR FPSGGRKIMIG+ADPKLWNL
Sbjct: 68 KKGRIFPSGGRKIMIGLADPKLWNL 92

[Close]

BLAST of MS023157 vs. NCBI nr
Match: KAG4914337.1 (hypothetical protein JHK87_051894 [Glycine soja])

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 14  KKGRTFPSGGRKIMIGIADPKLWNL 39
           KKGR FPSGGRKIMIG+ADPKLWNL
Sbjct: 91  KKGRIFPSGGRKIMIGLADPKLWNL 115

[Close]

BLAST of MS023157 vs. ExPASy TrEMBL
Match: A0A4V3WNW4 (Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1  MSGVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLIL 46
          +SGVRIPPRPQPA+KGRTFPSGG+KIMIGIAD KL NLG   L L
Sbjct: 44 VSGVRIPPRPQPAQKGRTFPSGGKKIMIGIADAKLLNLGPSYLFL 88

[Close]

BLAST of MS023157 vs. ExPASy TrEMBL
Match: A0A4D6N2G2 (Ribulose-bisphosphate carboxylase large chain OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1713 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.6e-04
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 14  KKGRTFPSGGRKIMIGIADPKLWNL 39
           KKGR FPSGGRKIMIG+ DPKLWNL
Sbjct: 365 KKGRIFPSGGRKIMIGLVDPKLWNL 389

The following BLAST results are available for this feature:

BLAST of MS023157 vs. NCBI nr


Match Name	E-value	Identity	Description
THG14067.1	3.3e-10	80.00	hypothetical protein TEA_017317 [Camellia sinensis var. sinensis]	[more]
KAG5070517.1	4.7e-04	92.00	hypothetical protein JHK85_002894 [Glycine max]	[more]
KAG5103944.1	4.7e-04	92.00	hypothetical protein JHK82_040914 [Glycine max]	[more]
KAG4909451.1	4.7e-04	92.00	hypothetical protein JHK87_055567 [Glycine soja]	[more]
KAG4914337.1	4.7e-04	92.00	hypothetical protein JHK87_051894 [Glycine soja]	[more]

BLAST of MS023157 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4V3WNW4	1.6e-10	80.00	Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 ...	[more]
A0A4D6N2G2	6.6e-04	88.00	Ribulose-bisphosphate carboxylase large chain OS=Vigna unguiculata OX=3917 GN=DE...	[more]

BLAST of MS023157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023157.1	MS023157.1	mRNA