MS023151 (gene) Bitter gourd (TR) v1

Overview


Name	MS023151
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Heme exporter protein C
Location	scaffold78: 483519 .. 483587 (-)
RNA-Seq Expression	MS023151
Synteny	MS023151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGGAAGACCTATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTC

mRNA sequence

CGGGGAAGACCTATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTC

Coding sequence (CDS)

CGGGGAAGACCTATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTC

Protein sequence

RGRPMWGTFWVWDARLTSVFISF

Homology

[Close]

BLAST of MS023151 vs. NCBI nr
Match: YP_009045777.1 (cytochrome c biogenesis C [Batis maritima] >AIC83380.1 cytochrome c biogenesis C [Batis maritima])

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. NCBI nr
Match: YP_009153945.1 (cytochrome c biogenesis C [Gossypium hirsutum] >YP_009153978.1 cytochrome c biogenesis C [Gossypium harknessii] >YP_009177642.1 cytochrome c biogenesis C [Gossypium barbadense] >YP_009250142.1 cytochrome c biogenesis C [Gossypium raimondii] >YP_009388341.1 cytochrome c biogenesis C [Gossypium arboreum] >YP_009388380.1 cytochrome c biogenesis C [Gossypium thurberi] >YP_009388416.1 cytochrome c biogenesis C [Gossypium davidsonii] >YP_009388452.1 cytochrome c biogenesis C [Gossypium trilobum] >YP_009412587.1 cytochrome c biogenesis C [Hibiscus cannabinus] >XP_012482190.1 PREDICTED: putative cytochrome c biosynthesis ccmC-like mitochondrial protein [Gossypium raimondii] >AFO69212.1 cytochrome c biogenesis C [Gossypium hirsutum] >AGA54182.1 cytochrome c biogenesis C [Gossypium hirsutum] >AGA54216.1 cytochrome c biogenesis C [Gossypium harknessii] >AKQ51126.1 cytochrome c biogenesis C [Gossypium barbadense] >AMT85339.1 cytochrome c biogenesis C [Gossypium arboreum])

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. NCBI nr
Match: YP_006666113.1 (CcmC [Malus domestica] >YP_009994945.1 CcmC [Sorbus aucuparia] >YP_010047102.1 cytochrome c biogenesis C [Pyrus betulifolia] >QKV49057.1 CcmC [Malus domestica] >QNP09239.1 CcmC [Sorbus aucuparia] >QPJ79539.1 cytochrome c biogenesis C [Pyrus betulifolia] >CBX33373.1 ccmC [Malus domestica])

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. NCBI nr
Match: YP_008964110.1 (cytochrome c biogenesis C [Ajuga reptans] >AHA84968.1 cytochrome c biogenesis C [Ajuga reptans])

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 100 RGRPMWGTFWVWDARLTSVFISF 122

[Close]

BLAST of MS023151 vs. NCBI nr
Match: QXE43746.1 (cytochrome c biogenesis C [Cedrus deodara])

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. ExPASy Swiss-Prot
Match: P92527 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMC PE=2 SV=4)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-06
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 2   GRPMWGTFWVWDARLTSVFISF 24
           GRPMWGTFWVWDARLTSVFI F
Sbjct: 112 GRPMWGTFWVWDARLTSVFILF 133

[Close]

BLAST of MS023151 vs. ExPASy Swiss-Prot
Match: P38453 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMC PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-05
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 2   GRPMWGTFWVWDARLTSVFISF 24
           G+PMWGTFWVWDARLTSV I F
Sbjct: 112 GKPMWGTFWVWDARLTSVLILF 133

[Close]

BLAST of MS023151 vs. ExPASy Swiss-Prot
Match: P30962 (Heme exporter protein C OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=cycZ PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 5.8e-05
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 0


Query: 2   GRPMWGTFWVWDARLTSVFISF 24
           GRPMWGT+W WDARLTSV I F
Sbjct: 112 GRPMWGTYWEWDARLTSVLILF 133

[Close]

BLAST of MS023151 vs. ExPASy Swiss-Prot
Match: P45034 (Heme exporter protein C OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=ccmC PE=3 SV=1)

HSP 1 Score: 43.1 bits (100), Expect = 4.9e-04
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 0


Query: 2   GRPMWGTFWVWDARLTSVFISF 24
           G+PMWGT+WVWDARLT+  I F
Sbjct: 115 GKPMWGTWWVWDARLTAELILF 136

[Close]

BLAST of MS023151 vs. ExPASy Swiss-Prot
Match: P0ABM3 (Heme exporter protein C OS=Escherichia coli O157:H7 OX=83334 GN=ccmC PE=3 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 8.3e-04
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 0


Query: 2   GRPMWGTFWVWDARLTSVFI 22
           G+PMWGT+WVWDARLTS  +
Sbjct: 115 GKPMWGTWWVWDARLTSELV 134

[Close]

BLAST of MS023151 vs. ExPASy TrEMBL
Match: E9KZM9 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Vigna radiata var. radiata OX=3916 GN=ccmC PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. ExPASy TrEMBL
Match: S4SKY5 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=ccmC PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. ExPASy TrEMBL
Match: A0A7H1CQT8 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Sapindus mukorossi OX=57655 GN=ccmC PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. ExPASy TrEMBL
Match: A0A7M1LDU9 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Rhododendron simsii OX=118357 GN=ccmC PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. ExPASy TrEMBL
Match: A0A224ASH1 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Brassica rapa subsp. nipposinica OX=333344 GN=ccmC PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-05
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. TAIR 10
Match: AT2G07681.1 (Cytochrome C assembly protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-09
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 491 RGRPMWGTFWVWDARLTSVFISF 513

[Close]

BLAST of MS023151 vs. TAIR 10
Match: AT2G07771.2 (Cytochrome C assembly protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-09
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

[Close]

BLAST of MS023151 vs. TAIR 10
Match: ATMG00900.1 (cytochrome C biogenesis 256 )

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-09
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 0


Query: 1   RGRPMWGTFWVWDARLTSVFISF 24
           RGRPMWGTFWVWDARLTSVFISF
Sbjct: 111 RGRPMWGTFWVWDARLTSVFISF 133

The following BLAST results are available for this feature:

BLAST of MS023151 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009045777.1	4.2e-05	100.00	cytochrome c biogenesis C [Batis maritima] >AIC83380.1 cytochrome c biogenesis C...	[more]
YP_009153945.1	4.2e-05	100.00	cytochrome c biogenesis C [Gossypium hirsutum] >YP_009153978.1 cytochrome c biog...	[more]
YP_006666113.1	4.2e-05	100.00	CcmC [Malus domestica] >YP_009994945.1 CcmC [Sorbus aucuparia] >YP_010047102.1 c...	[more]
YP_008964110.1	4.2e-05	100.00	cytochrome c biogenesis C [Ajuga reptans] >AHA84968.1 cytochrome c biogenesis C ...	[more]
QXE43746.1	4.2e-05	100.00	cytochrome c biogenesis C [Cedrus deodara]	[more]

BLAST of MS023151 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92527	1.0e-06	95.45	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsi...	[more]
P38453	1.2e-05	86.36	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia...	[more]
P30962	5.8e-05	81.82	Heme exporter protein C OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCR...	[more]
P45034	4.9e-04	72.73	Heme exporter protein C OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121...	[more]
P0ABM3	8.3e-04	75.00	Heme exporter protein C OS=Escherichia coli O157:H7 OX=83334 GN=ccmC PE=3 SV=1	[more]

BLAST of MS023151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E9KZM9	2.1e-05	100.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Vigna radi...	[more]
S4SKY5	2.1e-05	100.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Gossypium ...	[more]
A0A7H1CQT8	2.1e-05	100.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Sapindus m...	[more]
A0A7M1LDU9	2.1e-05	100.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Rhododendr...	[more]
A0A224ASH1	2.1e-05	100.00	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Brassica r...	[more]

BLAST of MS023151 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07681.1	4.0e-09	100.00	Cytochrome C assembly protein	[more]
AT2G07771.2	4.0e-09	100.00	Cytochrome C assembly protein	[more]
ATMG00900.1	4.0e-09	100.00	cytochrome C biogenesis 256	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023151.1	MS023151.1	mRNA