MS023138 (gene) Bitter gourd (TR) v1

Overview


Name	MS023138
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-box protein 1a
Location	scaffold78: 423165 .. 424399 (-)
RNA-Seq Expression	MS023138
Synteny	MS023138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGTTGGATTCCGATGTGTCAATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGCCCTTCATCTTCCAAGAAGTCTAAGCGATTCGAAATCAAGAAGTGGAATGCTGTCGCGCTCTGGGCTTGGGGTACTTTCAAACCCTAATTTTAACTCTTCCCATTTCTAGTAAATATTCGCCGCTTTTGGGTTTCTTGTCGTGATCTTGACGTAATTACGATTTCCTGGTGCAGATATCGTGGTCGATAATTGTGCAATCTGTAGGAATCACATAATGGATCTCTGTAAGTTCAAGAAATTTCGGAGTTTGAAAGTATTCATTAATTCCAGATGCGGGTTTTTTATGATAATTTGATGCTTCTCACTGTGCGACTCTACGATTGGTTTGGTGGTGTCTAGGCATTGAATGTCAGGCAAATCAGGCGAGCGCCACTAGTGAGGAGTGTACTGTCGCCTGGGGTATGCTATTACGCCTCTCTTTTGAAACCCTAATTTTGGTTTTAATTTCCTTGTTCTAGACGGTCAGGGAGCTGTGTCTGCTATATTATCTTTCTTGTGAAATCTGACCATTTATCTTTGGATTTTTGTGCACTTTGCAATTACAGCAGCTTTGATAAGTCTCAGGACTGAAAAATCATCTTTAGCTACTAATTTTTCTTAGTTAAACAGCCCTGTTAGCCACCTTTTAATACAAAAAATCTTTGATGTCTCTCGAGTTCAAGCCCTGGACCTGGTTGCGGGTGTCCCAGTTATAGGGTAAAAAGCTAAAGTTATCGATTCCAGGTTATATAAAAAGCATCTCAGTTAAACTTCCAAACGATACCGGTTGTCTTGTTGAATGGACCCTGCTTTTCTTTTTTTCGTGTGGTTAATGGAAGCTATTTCAAACTTTTACAAGTTTGATATCAATCTAGATTTTCATTGGTGATTTGTCTGTAGATCTCTTGTGTTATTGTTGTATCTTCTTTGGGGGGTCAGGCCTTTATCTGCCTCTTTGCTCTGGTTTTACTTGATTAAGATTCATGTTTGCAGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACCCGCCAAGTCTGTCCATTGGGTATAATTTGTATTTTGCTTTTAGTGTTTCTAATTATTTGAACTCTGTAAATTCTGCACATTCTTGATTGAAATTTTTGTTATTATTTTTCAGATAACAGTGAATGGGAGTTCCAGAAGTATGGACAT

mRNA sequence

ATGGCTACGTTGGATTCCGATGTGTCAATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGCCCTTCATCTTCCAAGAAGTCTAAGCGATTCGAAATCAAGAAGTGGAATGCTGTCGCGCTCTGGGCTTGGGATATCGTGGTCGATAATTGTGCAATCTGTAGGAATCACATAATGGATCTCTGCATTGAATGTCAGGCAAATCAGGCGAGCGCCACTAGTGAGGAGTGTACTGTCGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACCCGCCAAGTCTGTCCATTGGATAACAGTGAATGGGAGTTCCAGAAGTATGGACAT

Coding sequence (CDS)

ATGGCTACGTTGGATTCCGATGTGTCAATGGTTCCCGCTGGTGAGGCTTCGAGTAGTGCTGGCCCTTCATCTTCCAAGAAGTCTAAGCGATTCGAAATCAAGAAGTGGAATGCTGTCGCGCTCTGGGCTTGGGATATCGTGGTCGATAATTGTGCAATCTGTAGGAATCACATAATGGATCTCTGCATTGAATGTCAGGCAAATCAGGCGAGCGCCACTAGTGAGGAGTGTACTGTCGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACCCGCCAAGTCTGTCCATTGGATAACAGTGAATGGGAGTTCCAGAAGTATGGACAT

Protein sequence

MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Homology

[Close]

BLAST of MS023138 vs. NCBI nr
Match: XP_022147540.1 (RING-box protein 1a [Momordica charantia])

HSP 1 Score: 250.8 bits (639), Expect = 6.0e-63
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVSMVPAGEASSSAGP SSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVSMVPAGEASSSAGPLSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. NCBI nr
Match: XP_022933228.1 (RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cucurbita moschata] >XP_022968584.1 RING-box protein 1a [Cucurbita maxima] >XP_022988432.1 RING-box protein 1a [Cucurbita maxima] >XP_023515504.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >XP_023530609.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >KAG6588086.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021972.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6590039.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023702.1 RING-box protein 1a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 1.7e-62
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. NCBI nr
Match: XP_023880628.1 (RING-box protein 1a [Quercus suber] >XP_030945117.1 RING-box protein 1a [Quercus lobata] >KAF3947602.1 hypothetical protein CMV_026286 [Castanea mollissima] >KAF3959256.1 hypothetical protein CMV_015918 [Castanea mollissima])

HSP 1 Score: 248.4 bits (633), Expect = 3.0e-62
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDV MVP GEASSSAGPSSSKK+KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSSKKNKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. NCBI nr
Match: XP_027926839.1 (RING-box protein 1a isoform X2 [Vigna unguiculata])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDV+MVPAGE SSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVTMVPAGEPSSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. NCBI nr
Match: XP_004144035.1 (RING-box protein 1a [Cucumis sativus] >XP_008450927.1 PREDICTED: RING-box protein 1a [Cucumis melo] >XP_038879722.1 RING-box protein 1a [Benincasa hispida] >KAA0055771.1 RING-box protein 1a [Cucumis melo var. makuwa] >KGN66305.1 hypothetical protein Csa_007202 [Cucumis sativus] >TYK10022.1 RING-box protein 1a [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 9.0e-62
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of MS023138 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.0e-54
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGP-SSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS + P SSSK SKRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of MS023138 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-52
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 10  MVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of MS023138 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-52
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 10  MVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]

BLAST of MS023138 vs. ExPASy Swiss-Prot
Match: Q9W5E1 (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.8e-52
Identity = 91/98 (92.86%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 22  PSSSKK--SKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 81
           PSSS K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV
Sbjct: 11  PSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTV 70

Query: 82  AWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           AWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Sbjct: 71  AWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYGH 108

[Close]

BLAST of MS023138 vs. ExPASy TrEMBL
Match: A0A6J1D0F3 (RING-box protein 1a OS=Momordica charantia OX=3673 GN=LOC111016444 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.9e-63
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVSMVPAGEASSSAGP SSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVSMVPAGEASSSAGPLSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. ExPASy TrEMBL
Match: A0A6J1I027 (RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.4e-63
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. ExPASy TrEMBL
Match: A0A6J1F460 (RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.4e-63
Identity = 115/117 (98.29%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. ExPASy TrEMBL
Match: A0A2N9HDW3 (RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37671 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-62
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDV MVP GEASSSAGPSSSKK+KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSSKKNKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. ExPASy TrEMBL
Match: A0A5D3CFD3 (RING-box protein 1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001540 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-62
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DV MVPAGEASSSAGPSSSKK KRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]

BLAST of MS023138 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 237.3 bits (604), Expect = 6.4e-63
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]

BLAST of MS023138 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 223.8 bits (569), Expect = 7.3e-59
Identity = 110/142 (77.46%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAW------------------------GVCNHAFHFHCISR 118
           DLCIECQANQASATSEECTVAW                        GVCNHAFHFHCISR
Sbjct: 61  DLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISR 120

[Close]

BLAST of MS023138 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 223.4 bits (568), Expect = 9.5e-59
Identity = 109/136 (80.15%), Postives = 114/136 (83.82%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSS-AGPSSSKKSKRFEIKKWNAVALWAWD-------------- 60
           MATLDSDV+M+PAGEASSS A  SS+KK+KRFEIKKW+AVALWAW               
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLS 60

Query: 61  ----IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 118
               IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ
Sbjct: 61  MFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 120

[Close]

BLAST of MS023138 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.4e-55
Identity = 101/118 (85.59%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MATLDSDVSMVPAGEASSSAGP-SSSKKSKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS + P SSSK SKRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]

BLAST of MS023138 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 81.3 bits (199), Expect = 5.8e-16
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 27  KSKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 86
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 87  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 115
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

The following BLAST results are available for this feature:

BLAST of MS023138 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147540.1	6.0e-63	99.15	RING-box protein 1a [Momordica charantia]	[more]
XP_022933228.1	1.7e-62	98.29	RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cu...	[more]
XP_023880628.1	3.0e-62	97.44	RING-box protein 1a [Quercus suber] >XP_030945117.1 RING-box protein 1a [Quercus...	[more]
XP_027926839.1	3.9e-62	97.44	RING-box protein 1a isoform X2 [Vigna unguiculata]	[more]
XP_004144035.1	3.9e-62	97.44	RING-box protein 1a [Cucumis sativus] >XP_008450927.1 PREDICTED: RING-box protei...	[more]

BLAST of MS023138 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	9.0e-62	93.22	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	9.0e-54	85.59	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	1.3e-52	84.26	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	1.3e-52	84.26	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q9W5E1	3.8e-52	92.86	RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1	[more]

BLAST of MS023138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0F3	2.9e-63	99.15	RING-box protein 1a OS=Momordica charantia OX=3673 GN=LOC111016444 PE=4 SV=1	[more]
A0A6J1I027	8.4e-63	98.29	RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1	[more]
A0A6J1F460	8.4e-63	98.29	RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1	[more]
A0A2N9HDW3	1.4e-62	97.44	RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3767...	[more]
A0A5D3CFD3	1.9e-62	97.44	RING-box protein 1a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G0...	[more]

BLAST of MS023138 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	6.4e-63	93.22	RING-box 1	[more]
AT5G20570.2	7.3e-59	77.46	RING-box 1	[more]
AT5G20570.3	9.5e-59	80.15	RING-box 1	[more]
AT3G42830.1	6.4e-55	85.59	RING/U-box superfamily protein	[more]
AT3G05870.1	5.8e-16	39.56	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 49..107 e-value: 1.9E-25 score: 88.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 18..117 e-value: 8.3E-36 score: 124.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR11210:SF41	E3 UBIQUITIN-PROTEIN LIGASE RBX1	coord: 1..117
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 1..117
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 49..110 e-value: 4.02839E-44 score: 135.96
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 29..114
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 62..107 score: 9.30263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023138.1	MS023138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding