MS023135 (gene) Bitter gourd (TR) v1

Overview


Name	MS023135
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	FRIGIDA interacting protein 1
Location	scaffold78: 382641 .. 382736 (-)
RNA-Seq Expression	MS023135
Synteny	MS023135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTATCACGATGTTGGTCGACTTTCTGATCAGCAAATGGCTCTGTTGCAATACCAGCGAGAGAATCTTCATTTTCTGAATGAAGAGGTATACCGT

mRNA sequence

AGGTATCACGATGTTGGTCGACTTTCTGATCAGCAAATGGCTCTGTTGCAATACCAGCGAGAGAATCTTCATTTTCTGAATGAAGAGGTATACCGT

Coding sequence (CDS)

AGGTATCACGATGTTGGTCGACTTTCTGATCAGCAAATGGCTCTGTTGCAATACCAGCGAGAGAATCTTCATTTTCTGAATGAAGAGGTATACCGT

Protein sequence

RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR

Homology

[Close]

BLAST of MS023135 vs. NCBI nr
Match: KAG7023699.1 (Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 194 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 225

[Close]

BLAST of MS023135 vs. NCBI nr
Match: XP_022967730.1 (uncharacterized protein LOC111467166 isoform X1 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 199 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 230

[Close]

BLAST of MS023135 vs. NCBI nr
Match: KAE8653456.1 (hypothetical protein Csa_007539 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 199 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 230

[Close]

BLAST of MS023135 vs. NCBI nr
Match: TYK10025.1 (uncharacterized protein E5676_scaffold16G001570 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 189 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 220

[Close]

BLAST of MS023135 vs. NCBI nr
Match: KAG7021969.1 (Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 197 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 228

[Close]

BLAST of MS023135 vs. ExPASy Swiss-Prot
Match: Q8S8K9 (Protein FIP1 OS=Arabidopsis thaliana OX=3702 GN=FIP1 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.8e-05
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 6   GRLSDQQMALLQYQRENLHFLNEEV 31
           GRLSDQQ ALLQYQRENLHFL+EE+
Sbjct: 203 GRLSDQQTALLQYQRENLHFLSEEI 227

[Close]

BLAST of MS023135 vs. ExPASy TrEMBL
Match: A0A6J1JJ60 (uncharacterized protein LOC111485584 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485584 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 199 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 230

[Close]

BLAST of MS023135 vs. ExPASy TrEMBL
Match: A0A6J1HBP9 (uncharacterized protein LOC111461818 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461818 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 199 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 230

[Close]

BLAST of MS023135 vs. ExPASy TrEMBL
Match: A0A6J1HRN0 (uncharacterized protein LOC111467166 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467166 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 118 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 149

[Close]

BLAST of MS023135 vs. ExPASy TrEMBL
Match: A0A6J1HVA3 (uncharacterized protein LOC111467166 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467166 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 199 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 230

[Close]

BLAST of MS023135 vs. ExPASy TrEMBL
Match: A0A6J1JCN1 (uncharacterized protein LOC111485584 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485584 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYHDVGRLSDQQMALLQYQRENLHFLNEE+ R
Sbjct: 134 RYHDVGRLSDQQMALLQYQRENLHFLNEEILR 165

[Close]

BLAST of MS023135 vs. TAIR 10
Match: AT5G20580.1 (BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast hits to 167 proteins in 73 species: Archae - 0; Bacteria - 25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-09
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYH+ GRLSDQQMALLQYQRENLH+L+EE+ R
Sbjct: 199 RYHEAGRLSDQQMALLQYQRENLHYLSEEILR 230

[Close]

BLAST of MS023135 vs. TAIR 10
Match: AT5G20580.2 (BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-09
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   RYHDVGRLSDQQMALLQYQRENLHFLNEEVYR 33
           RYH+ GRLSDQQMALLQYQRENLH+L+EE+ R
Sbjct: 199 RYHEAGRLSDQQMALLQYQRENLHYLSEEILR 230

[Close]

BLAST of MS023135 vs. TAIR 10
Match: AT2G06005.2 (FRIGIDA interacting protein 1 )

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-06
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 6   GRLSDQQMALLQYQRENLHFLNEEV 31
           GRLSDQQ ALLQYQRENLHFL+EE+
Sbjct: 130 GRLSDQQTALLQYQRENLHFLSEEI 154

[Close]

BLAST of MS023135 vs. TAIR 10
Match: AT2G06005.1 (FRIGIDA interacting protein 1 )

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-06
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 6   GRLSDQQMALLQYQRENLHFLNEEV 31
           GRLSDQQ ALLQYQRENLHFL+EE+
Sbjct: 203 GRLSDQQTALLQYQRENLHFLSEEI 227

The following BLAST results are available for this feature:

BLAST of MS023135 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023699.1	2.2e-07	93.75	Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022967730.1	2.2e-07	93.75	uncharacterized protein LOC111467166 isoform X1 [Cucurbita maxima]	[more]
KAE8653456.1	2.2e-07	93.75	hypothetical protein Csa_007539 [Cucumis sativus]	[more]
TYK10025.1	2.2e-07	93.75	uncharacterized protein E5676_scaffold16G001570 [Cucumis melo var. makuwa]	[more]
KAG7021969.1	2.2e-07	93.75	Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS023135 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8K9	2.8e-05	88.00	Protein FIP1 OS=Arabidopsis thaliana OX=3702 GN=FIP1 PE=1 SV=1	[more]

BLAST of MS023135 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJ60	1.1e-07	93.75	uncharacterized protein LOC111485584 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HBP9	1.1e-07	93.75	uncharacterized protein LOC111461818 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HRN0	1.1e-07	93.75	uncharacterized protein LOC111467166 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HVA3	1.1e-07	93.75	uncharacterized protein LOC111467166 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JCN1	1.1e-07	93.75	uncharacterized protein LOC111485584 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS023135 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20580.1	1.4e-09	81.25	BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:...	[more]
AT5G20580.2	1.4e-09	81.25	BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:...	[more]
AT2G06005.2	2.0e-06	88.00	FRIGIDA interacting protein 1	[more]
AT2G06005.1	2.0e-06	88.00	FRIGIDA interacting protein 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023135.1	MS023135.1	mRNA