MS023119 (gene) Bitter gourd (TR) v1

Overview


Name	MS023119
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II PsbX
Location	scaffold78: 282623 .. 282967 (+)
RNA-Seq Expression	MS023119
Synteny	MS023119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAACTTCTGCACTTTCAATGGCCCTGCCGTTGACCAACAAGACCCTCTCCACCGCCTTCTTCAGTCCATTGCCATCCAGGTCGATCGCCGCCGCCCCGAAATCCAACGGCAGGCTCCTCGTCGTCCGATCGTCCTTGAAGGAGAAGGCCGTCACCGGACTCACGGCCGCCGCGCTGACGGCGTCGATGGTGATTCCGGAGGTTGCTGAGGCTGCCGGTCCTGGAATTTCTCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGCGGTGGTGGTCGCCATAGTCGGAGCTGTTATCGGCGTGTCGAACTTCGATCCGGTCAAGCGTAGC

mRNA sequence

ATGGCGTCAACTTCTGCACTTTCAATGGCCCTGCCGTTGACCAACAAGACCCTCTCCACCGCCTTCTTCAGTCCATTGCCATCCAGGTCGATCGCCGCCGCCCCGAAATCCAACGGCAGGCTCCTCGTCGTCCGATCGTCCTTGAAGGAGAAGGCCGTCACCGGACTCACGGCCGCCGCGCTGACGGCGTCGATGGTGATTCCGGAGGTTGCTGAGGCTGCCGGTCCTGGAATTTCTCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGCGGTGGTGGTCGCCATAGTCGGAGCTGTTATCGGCGTGTCGAACTTCGATCCGGTCAAGCGTAGC

Coding sequence (CDS)

ATGGCGTCAACTTCTGCACTTTCAATGGCCCTGCCGTTGACCAACAAGACCCTCTCCACCGCCTTCTTCAGTCCATTGCCATCCAGGTCGATCGCCGCCGCCCCGAAATCCAACGGCAGGCTCCTCGTCGTCCGATCGTCCTTGAAGGAGAAGGCCGTCACCGGACTCACGGCCGCCGCGCTGACGGCGTCGATGGTGATTCCGGAGGTTGCTGAGGCTGCCGGTCCTGGAATTTCTCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGCGGTGGTGGTCGCCATAGTCGGAGCTGTTATCGGCGTGTCGAACTTCGATCCGGTCAAGCGTAGC

Protein sequence

MASTSALSMALPLTNKTLSTAFFSPLPSRSIAAAPKSNGRLLVVRSSLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPVKRS

Homology

[Close]

BLAST of MS023119 vs. NCBI nr
Match: XP_038878912.1 (uncharacterized protein LOC120071001 [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 101/123 (82.11%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MASTSALSMALPL---TNKTLST-AFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKA 60
           MASTSALSMALPL   T+K LS  AFF+PLPS    ++IAAAPKSNGR++ VRSSLKEKA
Sbjct: 1   MASTSALSMALPLTYATHKPLSNDAFFNPLPSFKSRKAIAAAPKSNGRIVAVRSSLKEKA 60

Query: 61  VTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPV 116
           V G+TAAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAGGAVVVAI+GAVIGV+NFDPV
Sbjct: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVANFDPV 120

[Close]

BLAST of MS023119 vs. NCBI nr
Match: KAG7023687.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLK 60
           MASTSA+S+ALPLTN T     + AFF+PLP+       ++IAAAP SNG L+ VRSSLK
Sbjct: 818 MASTSAVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSNGSLVAVRSSLK 877

Query: 61  EKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNF 115
           EKA+TGLTAAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAGG VVVAI+GAVIGVSNF
Sbjct: 878 EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 937

[Close]

BLAST of MS023119 vs. NCBI nr
Match: XP_022960741.1 (uncharacterized protein LOC111461452 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 95/125 (76.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLK 60
           MASTS +S+ALPLTN T     + AFF+PLP+       ++IAAAP S+GRL+ VRSSLK
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNF 115
           EKA+TGLTAAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAGG VVVAI+GAVIGVSNF
Sbjct: 61  EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of MS023119 vs. NCBI nr
Match: XP_022987287.1 (uncharacterized protein LOC111484883 [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MASTSALSMALPL---TNKTLST-AFFSPLPS-------RSIAAAPKSNGRLLVVRSSLK 60
           MASTS +S+ALPL   T+K LS  AFF+PLP+       ++IAAAP SNGRL+ VRSSLK
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNF 115
           EKA+TG++AAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAGG VVVAI+GAVIGVSNF
Sbjct: 61  EKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of MS023119 vs. NCBI nr
Match: XP_008450907.1 (PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 4.4e-34
Identity = 94/123 (76.42%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKA 60
           MASTSA+SMALP T+ T     + AFF+PLPS    + IAAAP SNGR++ VRSSLKEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPV 116
           V G+TAAAL ASMVIPEVAEAAG G+SPSLKNFLLSIAAGGAVVVAI GAVIGV+NFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

[Close]

BLAST of MS023119 vs. ExPASy TrEMBL
Match: A0A6J1H8G2 (uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC111461452 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 95/125 (76.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT----LSTAFFSPLPS-------RSIAAAPKSNGRLLVVRSSLK 60
           MASTS +S+ALPLTN T     + AFF+PLP+       ++IAAAP S+GRL+ VRSSLK
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNF 115
           EKA+TGLTAAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAGG VVVAI+GAVIGVSNF
Sbjct: 61  EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of MS023119 vs. ExPASy TrEMBL
Match: A0A6J1J9Y5 (uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.5e-35
Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MASTSALSMALPL---TNKTLST-AFFSPLPS-------RSIAAAPKSNGRLLVVRSSLK 60
           MASTS +S+ALPL   T+K LS  AFF+PLP+       ++IAAAP SNGRL+ VRSSLK
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLK 60

Query: 61  EKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNF 115
           EKA+TG++AAALTASMVIPEVAEAAGPG+SPSLKNFLLSIAAGG VVVAI+GAVIGVSNF
Sbjct: 61  EKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

[Close]

BLAST of MS023119 vs. ExPASy TrEMBL
Match: A0A1S3BRD2 (uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.1e-34
Identity = 94/123 (76.42%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKA 60
           MASTSA+SMALP T+ T     + AFF+PLPS    + IAAAP SNGR++ VRSSLKEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPV 116
           V G+TAAAL ASMVIPEVAEAAG G+SPSLKNFLLSIAAGGAVVVAI GAVIGV+NFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

[Close]

BLAST of MS023119 vs. ExPASy TrEMBL
Match: A0A0A0LWL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595840 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.7e-34
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT----LSTAFFSPLPS----RSIAAAPKSNGRLLVVRSSLKEKA 60
           MASTSALSMALP T+ T     + AFF+PLPS    + IA AP SNGR+L VRSS KEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPV 116
           V G++AAALTASMVIPEVAEAAG G+SPSLKNFLLSIAAGG VVVAI+GAVIGV+NFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

[Close]

BLAST of MS023119 vs. ExPASy TrEMBL
Match: A0A2P5C1D0 (Photosystem II PsbX OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192230 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 89/123 (72.36%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKT-----LSTAFFSPL---PSRSIAAAPKSNGRLLVVRSSLKEKA 60
           MA+TSA+SMALPLTN +      S AF  PL   PS++++AAP+S+G+ L VR+SLKEKA
Sbjct: 1   MAATSAVSMALPLTNASQKRVPSSDAFLKPLPVRPSKALSAAPRSSGK-LEVRASLKEKA 60

Query: 61  VTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPV 116
           VTG+TAAA+TASMVIP+VAEAAGPG+SPSLKNFLLSI AGG VV AIVGAVIGV+NFDPV
Sbjct: 61  VTGITAAAMTASMVIPQVAEAAGPGVSPSLKNFLLSIVAGGVVVTAIVGAVIGVANFDPV 120

[Close]

BLAST of MS023119 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-27
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MASTSALSMALPLTNKTLSTAFFSPLPSRSIAAAPKSNGRL--LVVRSSLKEKAVTGLTA 60
           MASTSA+S+  PL N+T S+ F  PLP +   A   + GR   L V++   +KA+TG++A
Sbjct: 1   MASTSAMSLVTPL-NQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISA 60

Query: 61  AALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGAVVVAIVGAVIGVSNFDPVKRS 116
           AALTASMVIPE+AEAAG GISPSLKNFLLSIA+GG V+  I+G V+GVSNFDPVKR+
Sbjct: 61  AALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKRT 116

The following BLAST results are available for this feature:

BLAST of MS023119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878912.1	1.1e-37	82.11	uncharacterized protein LOC120071001 [Benincasa hispida]	[more]
KAG7023687.1	1.0e-35	76.80	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022960741.1	2.3e-35	76.00	uncharacterized protein LOC111461452 [Cucurbita moschata]	[more]
XP_022987287.1	2.0e-34	76.00	uncharacterized protein LOC111484883 [Cucurbita maxima]	[more]
XP_008450907.1	4.4e-34	76.42	PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]	[more]

BLAST of MS023119 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8G2	1.1e-35	76.00	uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC1114614...	[more]
A0A6J1J9Y5	9.5e-35	76.00	uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883...	[more]
A0A1S3BRD2	2.1e-34	76.42	uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=...	[more]
A0A0A0LWL3	4.7e-34	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595840 PE=4 SV=1	[more]
A0A2P5C1D0	2.6e-32	72.36	Photosystem II PsbX OS=Parasponia andersonii OX=3476 GN=PanWU01x14_192230 PE=4 S...	[more]

BLAST of MS023119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	1.1e-27	61.54	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 78..115 e-value: 1.5E-16 score: 60.1
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 77..115 e-value: 1.4E-10 score: 42.7
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..115
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023119.1	MS023119.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II