MS023116 (gene) Bitter gourd (TR) v1

Overview


Name	MS023116
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	vacuolar protein sorting-associated protein 2 homolog 1
Location	scaffold78: 269761 .. 271096 (+)
RNA-Seq Expression	MS023116
Synteny	MS023116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTCCTCCGGGAAAATAAGAGGATGCTGGACAAGTCGATCAGAGAAATTGAAAGGGAAAGACAAAGTCTTCAAACACAAGAGAAGAAACTAATTGCAGAGATTAAGAAAAGTGCCAAGCAAGGGCAAATGGTGTGTGTTCTTTTATTTTGCCTATCTTTAGATCATATTTTCTTTTATGAAATAGCATTTCTATTGCGATTCCTTACTTGTAATCGCTACGATTCTCTGAAGCTGGGACAGTTGGGTTGGTCCATCATGGTGAGAAGGGGAAGTATTTCATGAATTATTAATATTTGAAAGTATCTCTTAGATGTGCATATATCACCTGATTATTGTTGGATGCATTCGGCATACATTTTCTTAGCCCTTCTATTTATCAATAAATTTTCTTTTGGTGGTGAATGTCATATATGGGAGTGTCAAAGTTAGAATATTTAATGGGAAAAATAGAAAACCATTGCAACAAGCTTCTTATGCTTTACATTTGTGTTTTTAGAATTGACTTCTCACTCCGATCTGAAGATGTGTTTCTGTTGCAGGGCGCTGTGAAAGTAATGGCAAAAGATCTTGTTAGAACCAGGCACCAGATTGAAAAGTTCTACAAGCTTAAATCACAACTTCAGGGCGTATCTCTTAGAATTCAGGTATATTTTGTTTCATGACTGGTTTCTTTGGTACTTCTCAGTCATTGCAAGTTATTTTATTCTTTATCGTCAACTTCCATTTGTGCAAGAGCATGCTGATCCTACGTGCAATAAATCAGTAATGGTGAAATGACAGGTCGTATTTTGTACAGCATTTTACAATAAATCAGTAATGTTTATGTTTCCACATTGTTAGACTTTGAAGTCAACCCAAGCAATGGGAGAAGCGATGAAAGGTGTGACAAAGGCAATGGGACAAATGAATAGGCAGATGAACTTGCCATCCCTGCAGAAAATTATGCAAGAATTCATGAAACAGAATGAAAGAATGGAACTGATGACTGAAGTTATGGAAGACGCAATTGATGATGCTTTGGAAGGAGATGAGGAAGAGGAAGAGACAGAAGAATTGGTCAGCCAGGTTCTTGATGAGATAGGAATTGACATGAACCAAGAGGTAGCTTCATTTCCTTTTCTGATGCAATGTATAACCTCACCCTAAATGAAGACTGATTAAACCATGTTCCTATTTTTTTAACTATTTTCCCCCACAGCTCGTGAATGCACCTTCAACTGCTGTCACTGCACCAGCAGCAAAGACAAAAGTCGCACAAGCTGAAGCAACAGGGAACGATGATGGAGGAATAGACAGCGATCTTCAAGCCAGACTAGACAACTTGAGGAAAATG

mRNA sequence

GAACTCCTCCGGGAAAATAAGAGGATGCTGGACAAGTCGATCAGAGAAATTGAAAGGGAAAGACAAAGTCTTCAAACACAAGAGAAGAAACTAATTGCAGAGATTAAGAAAAGTGCCAAGCAAGGGCAAATGGGCGCTGTGAAAGTAATGGCAAAAGATCTTGTTAGAACCAGGCACCAGATTGAAAAGTTCTACAAGCTTAAATCACAACTTCAGGGCGTATCTCTTAGAATTCAGACTTTGAAGTCAACCCAAGCAATGGGAGAAGCGATGAAAGGTGTGACAAAGGCAATGGGACAAATGAATAGGCAGATGAACTTGCCATCCCTGCAGAAAATTATGCAAGAATTCATGAAACAGAATGAAAGAATGGAACTGATGACTGAAGTTATGGAAGACGCAATTGATGATGCTTTGGAAGGAGATGAGGAAGAGGAAGAGACAGAAGAATTGGTCAGCCAGGTTCTTGATGAGATAGGAATTGACATGAACCAAGAGCTCGTGAATGCACCTTCAACTGCTGTCACTGCACCAGCAGCAAAGACAAAAGTCGCACAAGCTGAAGCAACAGGGAACGATGATGGAGGAATAGACAGCGATCTTCAAGCCAGACTAGACAACTTGAGGAAAATG

Coding sequence (CDS)

GAACTCCTCCGGGAAAATAAGAGGATGCTGGACAAGTCGATCAGAGAAATTGAAAGGGAAAGACAAAGTCTTCAAACACAAGAGAAGAAACTAATTGCAGAGATTAAGAAAAGTGCCAAGCAAGGGCAAATGGGCGCTGTGAAAGTAATGGCAAAAGATCTTGTTAGAACCAGGCACCAGATTGAAAAGTTCTACAAGCTTAAATCACAACTTCAGGGCGTATCTCTTAGAATTCAGACTTTGAAGTCAACCCAAGCAATGGGAGAAGCGATGAAAGGTGTGACAAAGGCAATGGGACAAATGAATAGGCAGATGAACTTGCCATCCCTGCAGAAAATTATGCAAGAATTCATGAAACAGAATGAAAGAATGGAACTGATGACTGAAGTTATGGAAGACGCAATTGATGATGCTTTGGAAGGAGATGAGGAAGAGGAAGAGACAGAAGAATTGGTCAGCCAGGTTCTTGATGAGATAGGAATTGACATGAACCAAGAGCTCGTGAATGCACCTTCAACTGCTGTCACTGCACCAGCAGCAAAGACAAAAGTCGCACAAGCTGAAGCAACAGGGAACGATGATGGAGGAATAGACAGCGATCTTCAAGCCAGACTAGACAACTTGAGGAAAATG

Protein sequence

ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQNERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAAKTKVAQAEATGNDDGGIDSDLQARLDNLRKM

Homology

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BLAST of MS023116 vs. NCBI nr
Match: XP_022147739.1 (vacuolar protein sorting-associated protein 2 homolog 1 [Momordica charantia])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPST VTAPAA
Sbjct: 133 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTTVTAPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAEATGNDDGGIDSDLQARLDNLRKM
Sbjct: 193 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 223

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BLAST of MS023116 vs. NCBI nr
Match: XP_008450903.1 (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Cucumis melo])

HSP 1 Score: 367.9 bits (943), Expect = 6.0e-98
Identity = 206/211 (97.63%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREI+RERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIDRERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAV APAA
Sbjct: 133 NEKMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVAAPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAEATGNDDGGIDSDLQARLDNLR+M
Sbjct: 193 KTKVAQAEATGNDDGGIDSDLQARLDNLRRM 223

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BLAST of MS023116 vs. NCBI nr
Match: XP_004144020.1 (vacuolar protein sorting-associated protein 2 homolog 1 [Cucumis sativus] >KGN66277.1 hypothetical protein Csa_006873 [Cucumis sativus])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREI+RERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIDRERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAV APA 
Sbjct: 133 NEKMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVAAPAV 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAEATGNDDGGIDSDLQARLDNLR+M
Sbjct: 193 KTKVAQAEATGNDDGGIDSDLQARLDNLRRM 223

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BLAST of MS023116 vs. NCBI nr
Match: XP_038879802.1 (vacuolar protein sorting-associated protein 2 homolog 1 [Benincasa hispida])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDAIDDALEGDEEEEETEELV+QVLDEIGIDMNQELVNAPSTAV APAA
Sbjct: 133 NEKMELMTEVMEDAIDDALEGDEEEEETEELVNQVLDEIGIDMNQELVNAPSTAVAAPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAE TGNDDGGIDSDLQARLDNLR+M
Sbjct: 193 KTKVAQAEGTGNDDGGIDSDLQARLDNLRRM 223

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BLAST of MS023116 vs. NCBI nr
Match: XP_022968215.1 (vacuolar protein sorting-associated protein 2 homolog 1 [Cucurbita maxima])

HSP 1 Score: 365.2 bits (936), Expect = 3.9e-97
Identity = 204/211 (96.68%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDA+DDALEGDEEEEETEELVSQVLDEIGI+MNQELVNAPSTAV  PAA
Sbjct: 133 NEKMELMTEVMEDAMDDALEGDEEEEETEELVSQVLDEIGINMNQELVNAPSTAVATPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTK+AQAEATGNDDGGIDSDLQARLDNLRKM
Sbjct: 193 KTKIAQAEATGNDDGGIDSDLQARLDNLRKM 223

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BLAST of MS023116 vs. ExPASy Swiss-Prot
Match: Q9SKI2 (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS2.1 PE=1 SV=2)

HSP 1 Score: 336.3 bits (861), Expect = 2.6e-91
Identity = 191/212 (90.09%), Postives = 200/212 (94.34%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQ LQTQEKKLI EIKK+AKQGQMGAVKVMAKDL+RTRHQ
Sbjct: 14  ELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQ 73

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEF +Q
Sbjct: 74  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQ 133

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+ME+++EVM DAIDDALEGDEEEEETE+LVSQVLDEIGID+NQELVNAPS AV  PAA
Sbjct: 134 NEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAA 193

Query: 181 KTKVAQAEATG-NDDGGIDSDLQARLDNLRKM 212
           K KV QAEATG  D GGIDSDLQARLDNLRKM
Sbjct: 194 KNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

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BLAST of MS023116 vs. ExPASy Swiss-Prot
Match: Q54DB1 (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum OX=44689 GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 5.2e-52
Identity = 115/184 (62.50%), Postives = 153/184 (83.15%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           E+LREN+R L+KS+REI+RER +LQ QEKK+I +IKK AKQGQM + K+MAKDLVRTR+ 
Sbjct: 12  EVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYH 71

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           I+KFY++K+QLQ VSLRIQTL+STQAM EAMKGVTKAM  MNRQMNLP   KIM EF +Q
Sbjct: 72  IQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQ 131

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           +++M++  E+M D +D  +E D EEE+++E+++QVLDEIGID+  +LV+AP+T  T+ A+
Sbjct: 132 SDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTSVAS 191

Query: 181 KTKV 185
           K +V
Sbjct: 192 KHQV 195

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BLAST of MS023116 vs. ExPASy Swiss-Prot
Match: O43633 (Charged multivesicular body protein 2a OS=Homo sapiens OX=9606 GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-51
Identity = 120/211 (56.87%), Postives = 163/211 (77.25%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLR+N+R L++++RE++RERQ L+TQEKK+IA+IKK AKQGQM AV++MAKDLVRTR  
Sbjct: 13  ELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRY 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP +QKIM EF +Q
Sbjct: 73  VRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVT-APA 180
            E M++  E+M DAIDDA+  +E+EEE++ +VSQVLDE+G+ +  EL N PST  + + A
Sbjct: 133 AEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVA 192

Query: 181 AKTKVAQAEATGNDDGGIDSDLQARLDNLRK 211
           A  K A+A A+   D   D+DL+ RL NLR+
Sbjct: 193 AGGKKAEAAASALADA--DADLEERLKNLRR 221

[Close]

BLAST of MS023116 vs. ExPASy Swiss-Prot
Match: Q9DB34 (Charged multivesicular body protein 2a OS=Mus musculus OX=10090 GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-51
Identity = 118/210 (56.19%), Postives = 160/210 (76.19%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLR+N+R L++++RE++RERQ L+TQEKK+IA+IKK AKQGQM AV++MAKDLVRTR  
Sbjct: 13  ELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRY 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP +QKIM EF +Q
Sbjct: 73  VRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
            E M++  E+M DAIDDA+  +E+EEE++ +VSQVLDE+G+ +  EL N PST  +   A
Sbjct: 133 AEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRK 211
                +AEAT +     D+DL+ RL NLR+
Sbjct: 193 -AGGKKAEATASALADADADLEERLKNLRR 221

[Close]

BLAST of MS023116 vs. ExPASy Swiss-Prot
Match: Q6IP52 (Charged multivesicular body protein 2a OS=Xenopus laevis OX=8355 GN=chmp2a PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-51
Identity = 117/210 (55.71%), Postives = 160/210 (76.19%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLR+N+R L++++RE++RERQ L+ QEKK+IA+IKK AKQGQM AVK+MAKDLVRTR  
Sbjct: 13  ELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRY 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP +QKIM EF KQ
Sbjct: 73  VKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           +E M++  E+M DAIDDA+  +++EEE++ +VSQVLDE+G+ +  EL N PST  +   A
Sbjct: 133 SEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRK 211
             K  +A A   D    D+DL+ RL+NLR+
Sbjct: 193 GAKKGEATAALAD---ADADLEERLNNLRR 219

[Close]

BLAST of MS023116 vs. ExPASy TrEMBL
Match: A0A6J1D1W8 (vacuolar protein sorting-associated protein 2 homolog 1 OS=Momordica charantia OX=3673 GN=LOC111016599 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.0e-100
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPST VTAPAA
Sbjct: 133 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTTVTAPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAEATGNDDGGIDSDLQARLDNLRKM
Sbjct: 193 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 223

[Close]

BLAST of MS023116 vs. ExPASy TrEMBL
Match: A0A1S3BPQ1 (vacuolar protein sorting-associated protein 2 homolog 1 OS=Cucumis melo OX=3656 GN=LOC103492353 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.9e-98
Identity = 206/211 (97.63%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREI+RERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIDRERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAV APAA
Sbjct: 133 NEKMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVAAPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAEATGNDDGGIDSDLQARLDNLR+M
Sbjct: 193 KTKVAQAEATGNDDGGIDSDLQARLDNLRRM 223

[Close]

BLAST of MS023116 vs. ExPASy TrEMBL
Match: A0A0A0LZI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595810 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.5e-98
Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREI+RERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIDRERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAV APA 
Sbjct: 133 NEKMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVAAPAV 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTKVAQAEATGNDDGGIDSDLQARLDNLR+M
Sbjct: 193 KTKVAQAEATGNDDGGIDSDLQARLDNLRRM 223

[Close]

BLAST of MS023116 vs. ExPASy TrEMBL
Match: A0A6J1HWL7 (vacuolar protein sorting-associated protein 2 homolog 1 OS=Cucurbita maxima OX=3661 GN=LOC111467516 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 204/211 (96.68%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDA+DDALEGDEEEEETEELVSQVLDEIGI+MNQELVNAPSTAV  PAA
Sbjct: 133 NEKMELMTEVMEDAMDDALEGDEEEEETEELVSQVLDEIGINMNQELVNAPSTAVATPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTK+AQAEATGNDDGGIDSDLQARLDNLRKM
Sbjct: 193 KTKIAQAEATGNDDGGIDSDLQARLDNLRKM 223

[Close]

BLAST of MS023116 vs. ExPASy TrEMBL
Match: A0A6J1F0R7 (vacuolar protein sorting-associated protein 2 homolog 1 OS=Cucurbita moschata OX=3662 GN=LOC111441086 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.2e-97
Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQ LQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ
Sbjct: 13  ELLRENKRMLDKSIREIERERQGLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 72

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ
Sbjct: 73  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 132

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+MELMTEVMEDA+DDALEGDEEEEETEELVSQVLDEIGI+MNQELVNAPSTAV  PAA
Sbjct: 133 NEKMELMTEVMEDAMDDALEGDEEEEETEELVSQVLDEIGINMNQELVNAPSTAVATPAA 192

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
           KTK+AQAEATGNDDGGIDSDLQARLDNLR+M
Sbjct: 193 KTKIAQAEATGNDDGGIDSDLQARLDNLRRM 223

[Close]

BLAST of MS023116 vs. TAIR 10
Match: AT2G06530.1 (SNF7 family protein )

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-92
Identity = 191/212 (90.09%), Postives = 200/212 (94.34%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           ELLRENKRMLDKSIREIERERQ LQTQEKKLI EIKK+AKQGQMGAVKVMAKDL+RTRHQ
Sbjct: 14  ELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQ 73

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEF +Q
Sbjct: 74  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQ 133

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           NE+ME+++EVM DAIDDALEGDEEEEETE+LVSQVLDEIGID+NQELVNAPS AV  PAA
Sbjct: 134 NEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAA 193

Query: 181 KTKVAQAEATG-NDDGGIDSDLQARLDNLRKM 212
           K KV QAEATG  D GGIDSDLQARLDNLRKM
Sbjct: 194 KNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225

[Close]

BLAST of MS023116 vs. TAIR 10
Match: AT1G03950.1 (vacuolar protein sorting-associated protein 2.3 )

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-33
Identity = 89/209 (42.58%), Postives = 137/209 (65.55%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           E+LRE+KR + ++ R IE+E  SLQ++EKKL+ EIK++AK G  GA K++A+ L+R R Q
Sbjct: 12  EVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQ 71

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           I      ++Q++G++   Q + +  ++   M+G TKAM  M++ M+     K+M+EF KQ
Sbjct: 72  IANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQ 131

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           + +M++ TE+M D+IDDAL+ DE E+ETE+L +QVLDEIGID+  +L +AP         
Sbjct: 132 SAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP--------- 191

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLR 210
           K K+   +A      GID +L+ RL  LR
Sbjct: 192 KGKIGGKKAEDVGSSGID-ELEKRLAALR 210

[Close]

BLAST of MS023116 vs. TAIR 10
Match: AT5G44560.1 (SNF7 family protein )

HSP 1 Score: 134.8 bits (338), Expect = 8.0e-32
Identity = 84/211 (39.81%), Postives = 132/211 (62.56%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           + LR +KR +  + R IERE  SLQ +EK+L+AEIKK+AK G   A K++A+ LVR R Q
Sbjct: 12  DALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQ 71

Query: 61  IEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQ 120
           I      ++Q++GV+   Q L ++ ++   MKG TKAM  MN+QM      K++++F KQ
Sbjct: 72  ITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQ 131

Query: 121 NERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAA 180
           + ++++  E+M +AID+ L+ DE EEETE+L +QVLDEIG+ +  +L +AP   +    A
Sbjct: 132 SAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTA 191

Query: 181 KTKVAQAEATGNDDGGIDSDLQARLDNLRKM 212
               + A    N +     +L+ RL +LR++
Sbjct: 192 APPASTAATNKNSESSEVDELEKRLASLRRI 222

[Close]

BLAST of MS023116 vs. TAIR 10
Match: AT5G44560.2 (SNF7 family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-30
Identity = 80/197 (40.61%), Postives = 124/197 (62.94%), Query Frame = 0


Query: 15  REIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQIEKFYKLKSQLQGV 74
           R IERE  SLQ +EK+L+AEIKK+AK G   A K++A+ LVR R QI      ++Q++GV
Sbjct: 6   RGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGV 65

Query: 75  SLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMKQNERMELMTEVMEDA 134
           +   Q L ++ ++   MKG TKAM  MN+QM      K++++F KQ+ ++++  E+M +A
Sbjct: 66  TTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEA 125

Query: 135 IDDALEGDEEEEETEELVSQVLDEIGIDMNQELVNAPSTAVTAPAAKTKVAQAEATGNDD 194
           ID+ L+ DE EEETE+L +QVLDEIG+ +  +L +AP   +    A    + A    N +
Sbjct: 126 IDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSE 185

Query: 195 GGIDSDLQARLDNLRKM 212
                +L+ RL +LR++
Sbjct: 186 SSEVDELEKRLASLRRI 202

[Close]

BLAST of MS023116 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-14
Identity = 65/214 (30.37%), Postives = 119/214 (55.61%), Query Frame = 0


Query: 1   ELLRENKRMLDKSIREIERERQSLQTQEKKLIAEIKKSAKQGQMGAVKVMAKDLVRTRHQ 60
           +LLR+ +R L +  R IER+ + +Q +E+ +   IK++AK+  M + K +AK++V +R  
Sbjct: 16  QLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRT 75

Query: 61  IEKFYKLKSQLQGVSLRI-QTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFMK 120
           + + Y+ K+Q+  +S+ + +++   + +G   K   + M  +N  M  P +   MQEF K
Sbjct: 76  VNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQMAATMQEFSK 135

Query: 121 QNERMELMTEVMEDAIDDALEGDEEEEETEELVSQVLDEIGIDMNQEL-VNAPSTAVTAP 180
           +  +  ++ E + +AID+AL+ ++ EEE +E V +VL  I  +   EL V      +  P
Sbjct: 136 EMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVP 195

Query: 181 AAKTKVAQAE---ATGNDDGGIDSDLQARLDNLR 210
           A K   ++ E   A G DD     +++ARL  +R
Sbjct: 196 AQKASTSREEEAVAEGVDDEEELEEIRARLAKVR 228

The following BLAST results are available for this feature:

BLAST of MS023116 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147739.1	1.4e-99	99.53	vacuolar protein sorting-associated protein 2 homolog 1 [Momordica charantia]	[more]
XP_008450903.1	6.0e-98	97.63	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Cucumis melo...	[more]
XP_004144020.1	1.8e-97	97.16	vacuolar protein sorting-associated protein 2 homolog 1 [Cucumis sativus] >KGN66...	[more]
XP_038879802.1	1.8e-97	97.16	vacuolar protein sorting-associated protein 2 homolog 1 [Benincasa hispida]	[more]
XP_022968215.1	3.9e-97	96.68	vacuolar protein sorting-associated protein 2 homolog 1 [Cucurbita maxima]	[more]

BLAST of MS023116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKI2	2.6e-91	90.09	Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana ...	[more]
Q54DB1	5.2e-52	62.50	Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum OX=...	[more]
O43633	1.5e-51	56.87	Charged multivesicular body protein 2a OS=Homo sapiens OX=9606 GN=CHMP2A PE=1 SV...	[more]
Q9DB34	1.5e-51	56.19	Charged multivesicular body protein 2a OS=Mus musculus OX=10090 GN=Chmp2a PE=1 S...	[more]
Q6IP52	2.0e-51	55.71	Charged multivesicular body protein 2a OS=Xenopus laevis OX=8355 GN=chmp2a PE=2 ...	[more]

BLAST of MS023116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1W8	7.0e-100	99.53	vacuolar protein sorting-associated protein 2 homolog 1 OS=Momordica charantia O...	[more]
A0A1S3BPQ1	2.9e-98	97.63	vacuolar protein sorting-associated protein 2 homolog 1 OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LZI1	8.5e-98	97.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595810 PE=4 SV=1	[more]
A0A6J1HWL7	1.9e-97	96.68	vacuolar protein sorting-associated protein 2 homolog 1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1F0R7	4.2e-97	96.21	vacuolar protein sorting-associated protein 2 homolog 1 OS=Cucurbita moschata OX...	[more]

BLAST of MS023116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06530.1	1.8e-92	90.09	SNF7 family protein	[more]
AT1G03950.1	1.1e-33	42.58	vacuolar protein sorting-associated protein 2.3	[more]
AT5G44560.1	8.0e-32	39.81	SNF7 family protein	[more]
AT5G44560.2	1.5e-30	40.61	SNF7 family protein	[more]
AT5G22950.1	1.5e-14	30.37	SNF7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..34
None	No IPR available	GENE3D	6.10.140.1230		coord: 1..169 e-value: 6.1E-67 score: 226.9
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 1..211
None	No IPR available	PANTHER	PTHR10476:SF46	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE	coord: 1..211
IPR005024	Snf7 family	PFAM	PF03357	Snf7	coord: 5..174 e-value: 1.8E-43 score: 148.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023116.1	MS023116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport