MS023065 (gene) Bitter gourd (TR) v1

Overview
NameMS023065
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionActin cross-linking
Locationscaffold775: 119287 .. 123338 (-)
RNA-Seq ExpressionMS023065
SyntenyMS023065
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTGTTCAGCAAAACCAAAGCAGTGAAACTCCGGTGCCACAACGACAAGTACTTAGTCGCCGACGAGGACAAAGAAAGCGTCCGCCAGAGCCGCAACGGCTCATCGCGGAAGGCCATATGGGCGGTGGAGGCGGTGGATCAGAAGCCTGGCGCCGTGCGCCTGAGGAGCTGCCACGGGCGCTACCTCGGCGCGTCGGACCAGGCCTTCCTCATTGGGATGACCGGGAACAAGGCGGTTCAGGTGACCCCGGAGAAGCTGGCGGACTGGATGGTGCAGTGGGAGCCGGTGCGGGACGGGTTCCAGGTCAAGCTGCGGAGCTGGTGCGAGACGTACCTGCGGGCCAATGGGGGCACGCCACCGTGGCGGAACTCGGTCACCCACGGCGACCCGCACACCGCCGCCACCAGGAAGTGGATTCTGTGGGACGTGGAGCCGGTGGTCGACGCGGAGGCCGGCGCGGAGTATGGGTCCGTCACGAGCCACTTGGAATCTCTCGAGAGTTTTGCGTCTGTGGTTTCGGATGAGGTTCTTGGCTCGGAGCCTGGCACGCCCATGGCCGTAACGCCAAATTCTTCAACAAATCAGGTAACCCAATTCAATTCCCCACCTAACTCTAATATTAATCATTCACTCATCTGACTTTTTCCTAACAAATAATTTCCAGAAAGAAACTTTCTCAAAAGAAAAAAAAAAAAAAAAGAATCCAGAAAGAAACTTTACCTCTATTTTTCTTCTCTTACATTAACCAACTAGTGAAAATAATAACTTTGGCGGAGTTAAAATTACTTTTATATTATTGTAAATAAATTATTATTTAAATTTAAGTGATTTTGGCTAGACGATAAAAGTAATTTTAGAAAATGTCAAATAATCCAAATATCTCAAATCTGTCCTAAATTAGAAAAAGTAATCTTGTGAAGATATATAAAAGAAGAGGAGATAGATTTTTCTTTTCTTTTAGATAAATAAAAACTTATAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACTTACAAAAAAAAAAAAAAAAAAAAAAAAAGAATCCAGAAAGAAACTTTACCTCTATTTTTCTTCTCTTACATTAACCAACTAGTGAAAATAATAACTTTGGCGGAGTTAAAATTACTTTTATATTATTGTAAATAANNNNNNNNNNNNNNNNNNNNTTATGTATACAAATATTACACGTTTTTTGTTTTTCTTTTCATATATATAGTTGAATTAGAAAATTAATCTTGCTTTTAAAAGATTTGATTATATTGTTGAATTTTTAATTTTGATTGTAATAAAATATTTATATTTAACTTTATTGATAAATATTGTCGTGTGACATGTCTGGATTGGAAACAATAAAGGACTTCTTTTCAAAATAATAAAAAATAATGTGGATAAAATAAAATAAAAAAGTAAAAGAACTATGTATTTTACCTACCTACCACATTGAGTCTTTTAACCCCCTAATTTTATCAAGTTTTTAATCTTATGTCATATTATGATAAATTATCACACTTGTTAGTCCTCAGTATTAACATATAACGTTGTTAACCAAAGTAAAACTCAACTGGTTTAGACACCTATTTTCGACCTAAATATATTGAGTTCTTTGAATCTCCACCGCTATTTGTTATACTAAAACAAATATTAACATATCATGTTGTTTAATGTGATAATATGGATGACAAAGACTAATTAGAATCATCATTAAAAATGTAATTGAAACTTTTCAAAGATAAAAAAATTAAATAAAACTCCTAAAAAGGAAAAGAAGATCGTTCACAATTTAAAAAATTTCAAGGAGTTAATTTTTAATTTAACCTTAATTAATTAGTATAAGTAAATATAATAAGTAATTAATCTAGGATTATTTTTTAATAAATAATTTAAATTGACCTTATAATTTGAACATTGATTTTTTTTTAAATCTGGTCTTACAAAATTAATTAATTACAATTAACAATTAAATAATATGTTAATCATTTTTCTGCTAGTGTCCACTGTCCATCCATTTTTTAGTGACAAAATAAAATCTCTTTTTTCCTTGCTTTAATCAGAACATAGTTAAATTCGTCGAAGCGAGTACACAGCTTAACGATAATTGAAATATCTTTTTAACTAAGAGGTTGTGAGTTCGATCTCTCACTCTCACATATTGCCAGTTTTTCACCCACTTAAAAAAGAATTAAGTGGAATTTTCCTTTCTTTTAAGGAATTAGTGGAAACTAAAGCATACATATTTAATATTAAAAATTTAAAATGCATTTAGTTTTTTTTTTGTTAATAAAGTGCATTTAATTATACCATTATGAATATGATGTACATCTATTAAGTTTAACGATAAGGCCGGATAGAGATTTGAACCTAAAATTACATGTCTTAGCTGGTTGAGAGTTGAATTTACTTAATACAAAATTAAGTTACTTTAATTATAGTTGATTATTAAATGAACACAATAATATATTGCATAATTGAATAGCATTGTTTTTCTATTCCTACATTAAAGCAACATTTTAATCTAACCATTAATAATTTAAAAGAAATTCCGAATATCCCATAATTGATATCCAATCAATCAACAGAAGTCTGTGAATGGCCTTGTCCTCGACGAAGCCAGCTGGATTTGCCGGACGCATTTTCCGCGAAAAATCCAAATCGAATTTGATTTCCACGTCTGACAAAAAAAAATAAAAAACAATTTTCGAGGAACCTTCGGTTTACTGGTCAGCCACGTAAGTGGAATCCGCGTCTATCCTCTCGGCTCTCCCACTGTTCAATCCCATATACCATTTTATTCCCTTTTTTTTTTTAATTTTTTATTATCGCTTTTTCGACACATAAATTCTGTGAATCCTTGGTGGGAGTGGGAGAATATTTTATATCTTGTCCAAAGCTTACAGTTACGGTTCTTAATCTGTGATTTCTGCGTTTTTCTGGTTCACTGCAGATTCACATCTCCTCCGGCAAGTTCCGTTGTTCCGGCATGGATTTCTTCCGCCACGCCAAGGTGGTCCGGCTCCGGAGCCACCACGACAAGTACTTGTTCGCCGACGACGACGAGGAATCCGTCACTCAGGATCGGAACGGATCCTCCAAGAACGCCAGATGGAGCGTCGAGTTCGTTTCCTTCTCCGGCTCCGATTCCGACACCGTTATCCGGCTGAAGAGCTGCTACGGCAAGTATCTCACCGCCTCCAACCACCCGTTCTTGCTCGGAATGACCGGCCGGAAAGTTCTCCAGACTCTGCCCTCGCGCCTCGACTCGTCGCTCGAGTGGGAGCCAGTCAAGGAGGGCTCCCGCGCCAGGCTGAAGACGCGCTACGGCAATTTCTTGAGAGGGAACGGCGGTGTTCCGCCGTGGCGGAACTCGGTCACTCACGATGTCCCCCACCGGACCGTTACTCAGGATTGGATCCTCTGGGACGTCGATGTAATCGAAATCGAAGTCCAATCTCCAGTTCACAAACCCCTCTCCCGACCCGACCCGGACCCGGAATCTCCTCTCGAATTGAATTCCAATTCAACATTGTCTTCAGTCTCATCTGAATCTGCGCGTCCTTCAATCGCCGAGGTATGTACCGCCACAACTCCGGAACGAATTGAATAGCCCCAATTTTTCACATTCGGACTTCGGAGCCCTAATTTTTTGCCCCAAATTTTGCAGTCGAACGATTCTGCTGCGCTGAATTCGCCGCCCAAACCGGAAGGGAGGAGGATATGGTACCAGGTGGCGGACGACGAGGGAGAAGACGAGGCTTCGGAGAGGCTATCTTTGACATTCCAAGGGATGGGGGTGGAGGAATTGACTCGTAAATTGGAGGAGGAGACCGGCATTGAAGGATTGGTTGTGTGCACTCGCAATCCTCTGAATGGAAAGCCTTATCCGATTCGATTGCAGCTTCCTCCAAACAACGCAACTTTGAATGTCGTTCTGGTTCTGAAATCTTCCAAATGTGAGATTCTTGGATCCCTTTTCACT

mRNA sequence

ATGGAGCTGTTCAGCAAAACCAAAGCAGTGAAACTCCGGTGCCACAACGACAAGTACTTAGTCGCCGACGAGGACAAAGAAAGCGTCCGCCAGAGCCGCAACGGCTCATCGCGGAAGGCCATATGGGCGGTGGAGGCGGTGGATCAGAAGCCTGGCGCCGTGCGCCTGAGGAGCTGCCACGGGCGCTACCTCGGCGCGTCGGACCAGGCCTTCCTCATTGGGATGACCGGGAACAAGGCGGTTCAGGTGACCCCGGAGAAGCTGGCGGACTGGATGGTGCAGTGGGAGCCGGTGCGGGACGGGTTCCAGGTCAAGCTGCGGAGCTGGTGCGAGACGTACCTGCGGGCCAATGGGGGCACGCCACCGTGGCGGAACTCGGTCACCCACGGCGACCCGCACACCGCCGCCACCAGGAAGTGGATTCTGTGGGACGTGGAGCCGGTGGTCGACGCGGAGGCCGGCGCGGAGTATGGGTCCGTCACGAGCCACTTGGAATCTCTCGAGAGTTTTGCGTCTGTGGTTTCGGATGAGGTTCTTGGCTCGGAGCCTGGCACGCCCATGGCCGTAACGCCAAATTCTTCAACAAATCAGAATATTTTATATCTTGTCCAAAGCTTACAGTTACGGTTCTTAATCTGTGATTTCTGCGTTTTTCTGGTTCACTGCCACATCTCCTCCGGCAAGTTCCGTTGTTCCGGCATGGATTTCTTCCGCCACGCCAAGGTGGTCCGGCTCCGGAGCCACCACGACAAGTACTTGTTCGCCGACGACGACGAGGAATCCGTCACTCAGGATCGGAACGGATCCTCCAAGAACGCCAGATGGAGCGTCGAGTTCGTTTCCTTCTCCGGCTCCGATTCCGACACCGTTATCCGGCTGAAGAGCTGCTACGGCAAGTATCTCACCGCCTCCAACCACCCGTTCTTGCTCGGAATGACCGGCCGGAAAGTTCTCCAGACTCTGCCCTCGCGCCTCGACTCGTCGCTCGAGTGGGAGCCAGTCAAGGAGGGCTCCCGCGCCAGGCTGAAGACGCGCTACGGCAATTTCTTGAGAGGGAACGGCGGTGTTCCGCCGTGGCGGAACTCGGTCACTCACGATGTCCCCCACCGGACCGTTACTCAGGATTGGATCCTCTGGGACGTCGATGTAATCGAAATCGAAGTCCAATCTCCAGTTCACAAACCCCTCTCCCGACCCGACCCGGACCCGGAATCTCCTCTCGAATTGAATTCCAATTCAACATTGTCTTCAGTCTCATCTGAATCTGCGCGTCCTTCAATCGCCGAGTCGAACGATTCTGCTGCGCTGAATTCGCCGCCCAAACCGGAAGGGAGGAGGATATGGTACCAGGTGGCGGACGACGAGGGAGAAGACGAGGCTTCGGAGAGGCTATCTTTGACATTCCAAGGGATGGGGGTGGAGGAATTGACTCGTAAATTGGAGGAGGAGACCGGCATTGAAGGATTGGTTGTGTGCACTCGCAATCCTCTGAATGGAAAGCCTTATCCGATTCGATTGCAGCTTCCTCCAAACAACGCAACTTTGAATGTCGTTCTGGTTCTGAAATCTTCCAAATGTGAGATTCTTGGATCCCTTTTCACT

Coding sequence (CDS)

ATGGAGCTGTTCAGCAAAACCAAAGCAGTGAAACTCCGGTGCCACAACGACAAGTACTTAGTCGCCGACGAGGACAAAGAAAGCGTCCGCCAGAGCCGCAACGGCTCATCGCGGAAGGCCATATGGGCGGTGGAGGCGGTGGATCAGAAGCCTGGCGCCGTGCGCCTGAGGAGCTGCCACGGGCGCTACCTCGGCGCGTCGGACCAGGCCTTCCTCATTGGGATGACCGGGAACAAGGCGGTTCAGGTGACCCCGGAGAAGCTGGCGGACTGGATGGTGCAGTGGGAGCCGGTGCGGGACGGGTTCCAGGTCAAGCTGCGGAGCTGGTGCGAGACGTACCTGCGGGCCAATGGGGGCACGCCACCGTGGCGGAACTCGGTCACCCACGGCGACCCGCACACCGCCGCCACCAGGAAGTGGATTCTGTGGGACGTGGAGCCGGTGGTCGACGCGGAGGCCGGCGCGGAGTATGGGTCCGTCACGAGCCACTTGGAATCTCTCGAGAGTTTTGCGTCTGTGGTTTCGGATGAGGTTCTTGGCTCGGAGCCTGGCACGCCCATGGCCGTAACGCCAAATTCTTCAACAAATCAGAATATTTTATATCTTGTCCAAAGCTTACAGTTACGGTTCTTAATCTGTGATTTCTGCGTTTTTCTGGTTCACTGCCACATCTCCTCCGGCAAGTTCCGTTGTTCCGGCATGGATTTCTTCCGCCACGCCAAGGTGGTCCGGCTCCGGAGCCACCACGACAAGTACTTGTTCGCCGACGACGACGAGGAATCCGTCACTCAGGATCGGAACGGATCCTCCAAGAACGCCAGATGGAGCGTCGAGTTCGTTTCCTTCTCCGGCTCCGATTCCGACACCGTTATCCGGCTGAAGAGCTGCTACGGCAAGTATCTCACCGCCTCCAACCACCCGTTCTTGCTCGGAATGACCGGCCGGAAAGTTCTCCAGACTCTGCCCTCGCGCCTCGACTCGTCGCTCGAGTGGGAGCCAGTCAAGGAGGGCTCCCGCGCCAGGCTGAAGACGCGCTACGGCAATTTCTTGAGAGGGAACGGCGGTGTTCCGCCGTGGCGGAACTCGGTCACTCACGATGTCCCCCACCGGACCGTTACTCAGGATTGGATCCTCTGGGACGTCGATGTAATCGAAATCGAAGTCCAATCTCCAGTTCACAAACCCCTCTCCCGACCCGACCCGGACCCGGAATCTCCTCTCGAATTGAATTCCAATTCAACATTGTCTTCAGTCTCATCTGAATCTGCGCGTCCTTCAATCGCCGAGTCGAACGATTCTGCTGCGCTGAATTCGCCGCCCAAACCGGAAGGGAGGAGGATATGGTACCAGGTGGCGGACGACGAGGGAGAAGACGAGGCTTCGGAGAGGCTATCTTTGACATTCCAAGGGATGGGGGTGGAGGAATTGACTCGTAAATTGGAGGAGGAGACCGGCATTGAAGGATTGGTTGTGTGCACTCGCAATCCTCTGAATGGAAAGCCTTATCCGATTCGATTGCAGCTTCCTCCAAACAACGCAACTTTGAATGTCGTTCTGGTTCTGAAATCTTCCAAATGTGAGATTCTTGGATCCCTTTTCACT

Protein sequence

MELFSKTKAVKLRCHNDKYLVADEDKESVRQSRNGSSRKAIWAVEAVDQKPGAVRLRSCHGRYLGASDQAFLIGMTGNKAVQVTPEKLADWMVQWEPVRDGFQVKLRSWCETYLRANGGTPPWRNSVTHGDPHTAATRKWILWDVEPVVDAEAGAEYGSVTSHLESLESFASVVSDEVLGSEPGTPMAVTPNSSTNQNILYLVQSLQLRFLICDFCVFLVHCHISSGKFRCSGMDFFRHAKVVRLRSHHDKYLFADDDEESVTQDRNGSSKNARWSVEFVSFSGSDSDTVIRLKSCYGKYLTASNHPFLLGMTGRKVLQTLPSRLDSSLEWEPVKEGSRARLKTRYGNFLRGNGGVPPWRNSVTHDVPHRTVTQDWILWDVDVIEIEVQSPVHKPLSRPDPDPESPLELNSNSTLSSVSSESARPSIAESNDSAALNSPPKPEGRRIWYQVADDEGEDEASERLSLTFQGMGVEELTRKLEEETGIEGLVVCTRNPLNGKPYPIRLQLPPNNATLNVVLVLKSSKCEILGSLFT
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885306.15.3e-19168.42uncharacterized protein LOC120075736 isoform X1 [Benincasa hispida][more]
XP_038885307.17.6e-19068.28uncharacterized protein LOC120075736 isoform X2 [Benincasa hispida][more]
XP_023002141.14.6e-18764.20uncharacterized protein LOC111496090 [Cucurbita maxima][more]
XP_022951507.11.3e-18664.38uncharacterized protein LOC111454304 [Cucurbita moschata][more]
XP_023538149.11.3e-18664.02uncharacterized protein LOC111799006 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KKG72.2e-18764.20uncharacterized protein LOC111496090 OS=Cucurbita maxima OX=3661 GN=LOC111496090... [more]
A0A6J1GHV06.5e-18764.38uncharacterized protein LOC111454304 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
A0A0A0KG102.5e-17864.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G403600 PE=4 SV=1[more]
A0A5D3CJI32.3e-17662.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TPU72.3e-17662.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT1G27100.15.5e-14652.17Actin cross-linking protein [more]
AT1G69900.15.8e-9546.97Actin cross-linking protein [more]
AT1G59710.16.0e-9259.60Protein of unknown function (DUF569) [more]
AT3G28630.17.6e-8753.80Protein of unknown function (DUF569) [more]
AT3G28630.23.8e-8654.24Protein of unknown function (DUF569) [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007679Domain of unknown function DUF569PFAMPF04601DUF569coord: 234..379
e-value: 3.9E-71
score: 237.3
coord: 1..143
e-value: 9.2E-65
score: 216.6
NoneNo IPR availableGENE3D2.80.10.50coord: 5..142
e-value: 1.0E-15
score: 59.9
NoneNo IPR availableGENE3D2.80.10.50coord: 242..365
e-value: 6.2E-15
score: 57.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..437
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..444
NoneNo IPR availablePANTHERPTHR31205ACTIN CROSS-LINKING PROTEIN (DUF569)coord: 1..153
coord: 212..525
NoneNo IPR availablePANTHERPTHR31205:SF42CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATEDcoord: 1..153
coord: 212..525
IPR008999Actin-crosslinkingSUPERFAMILY50405Actin-crosslinking proteinscoord: 237..384
IPR008999Actin-crosslinkingSUPERFAMILY50405Actin-crosslinking proteinscoord: 8..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023065.1MS023065.1mRNA