MS023017 (gene) Bitter gourd (TR) v1

Overview
NameMS023017
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold357: 606815 .. 606964 (-)
RNA-Seq ExpressionMS023017
SyntenyMS023017
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAACAGACAGCTCGCGACCCGAAAGAGAATCCAGTCTTTCTTCGTCGTGAATATCTGAATAGAACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGGTCAACTGGAATGTGTATTATCCATATAGGGGA

mRNA sequence

GTTGAACAGACAGCTCGCGACCCGAAAGAGAATCCAGTCTTTCTTCGTCGTGAATATCTGAATAGAACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGGTCAACTGGAATGTGTATTATCCATATAGGGGA

Coding sequence (CDS)

GTTGAACAGACAGCTCGCGACCCGAAAGAGAATCCAGTCTTTCTTCGTCGTGAATATCTGAATAGAACGAACCGCCCCGTGGTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCGGTCAACTGGAATGTGTATTATCCATATAGGGGA

Protein sequence

VEQTARDPKENPVFLRREYLNRTNRPVVCFGTKQLELGSVNWNVYYPYRG
Homology
[Close]
BLAST of MS023017 vs. NCBI nr
Match: QIB71948.1 (hypothetical protein [Fagonia indica])

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 3  QTARDPKENPVFLRREYLNRTNRPV---VCFGTKQLELGSVNWNVYYPYRG 51
          Q   + +EN V + REYLNRTN PV   VCF TKQLELGSVNWNVYYPYRG
Sbjct: 35 QDLSEKRENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRG 85

[Close]
BLAST of MS023017 vs. ExPASy TrEMBL
Match: A0A0A0LBC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 8  PKENPVFLRREYLNRTNRPVVCFGTKQLELGSVNWNVYYPYRG 51
          PKENPVFL REYLNRTNRPVVCFGTKQLELGS+NWNVYYPYRG
Sbjct: 10 PKENPVFLGREYLNRTNRPVVCFGTKQLELGSLNWNVYYPYRG 52

[Close]
BLAST of MS023017 vs. ExPASy TrEMBL
Match: A0A6C0UA12 (Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.2e-11
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 3  QTARDPKENPVFLRREYLNRTNRPV---VCFGTKQLELGSVNWNVYYPYRG 51
          Q   + +EN V + REYLNRTN PV   VCF TKQLELGSVNWNVYYPYRG
Sbjct: 35 QDLSEKRENSVLIGREYLNRTNHPVDLFVCFRTKQLELGSVNWNVYYPYRG 85

The following BLAST results are available for this feature:
BLAST of MS023017 vs. NCBI nr
Match NameE-valueIdentityDescription
QIB71948.16.6e-1170.59hypothetical protein [Fagonia indica][more]
BLAST of MS023017 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS023017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBC91.1e-1695.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600000 PE=4 SV=1[more]
A0A6C0UA123.2e-1170.59Uncharacterized protein OS=Fagonia indica OX=66629 PE=4 SV=1[more]
BLAST of MS023017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023017.1MS023017.1mRNA