MS023007 (gene) Bitter gourd (TR) v1

Overview


Name	MS023007
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	11 kDa late embryogenesis abundant protein-like
Location	scaffold357: 498623 .. 498832 (+)
RNA-Seq Expression	MS023007
Synteny	MS023007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTGGACAAAATGCGGGCCCACGACCCGGTGGAGAAAGACATGGCCGAGGCGAGGAAAGAAGAGAGAATCACCGAGGCAGAGATCAACAAGCAACAAGCGCGTGCAGCCCACGCGGCCGAGAGACAAGCCGGCACCGGCACCGGCACCGGAACACACGCCGGATTAGCCACCGGAACCGGGACTGGGGTCGGGCCGACCACCGGCACC

mRNA sequence

CAGGTGGACAAAATGCGGGCCCACGACCCGGTGGAGAAAGACATGGCCGAGGCGAGGAAAGAAGAGAGAATCACCGAGGCAGAGATCAACAAGCAACAAGCGCGTGCAGCCCACGCGGCCGAGAGACAAGCCGGCACCGGCACCGGCACCGGAACACACGCCGGATTAGCCACCGGAACCGGGACTGGGGTCGGGCCGACCACCGGCACC

Coding sequence (CDS)

CAGGTGGACAAAATGCGGGCCCACGACCCGGTGGAGAAAGACATGGCCGAGGCGAGGAAAGAAGAGAGAATCACCGAGGCAGAGATCAACAAGCAACAAGCGCGTGCAGCCCACGCGGCCGAGAGACAAGCCGGCACCGGCACCGGCACCGGAACACACGCCGGATTAGCCACCGGAACCGGGACTGGGGTCGGGCCGACCACCGGCACC

Protein sequence

QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGTGTGVGPTTGT

Homology

[Close]

BLAST of MS023007 vs. NCBI nr
Match: XP_022158338.1 (11 kDa late embryogenesis abundant protein-like [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQA    GTGT AGLATGT
Sbjct: 36  KVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQA----GTGTLAGLATGT 95

Query: 61  GTGVGPTTGT 71
           GTGVGPTTGT
Sbjct: 96  GTGVGPTTGT 101

[Close]

BLAST of MS023007 vs. NCBI nr
Match: XP_038905932.1 (11 kDa late embryogenesis abundant protein-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 7.6e-13
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP+EKDMA  RKEERI EAE++KQQARA HAA+RQ  TGTG GT  GL TGT
Sbjct: 36  KVDKMRAHDPIEKDMARERKEERIQEAELDKQQARAEHAADRQ--TGTGPGTRVGLGTGT 95

Query: 61  GTGVGPTT 69
           GTG G  T
Sbjct: 96  GTGTGTHT 101

[Close]

BLAST of MS023007 vs. NCBI nr
Match: XP_022940345.1 (11 kDa late embryogenesis abundant protein-like [Cucurbita moschata] >XP_023539729.1 11 kDa late embryogenesis abundant protein-like [Cucurbita pepo subsp. pepo] >XP_023539730.1 11 kDa late embryogenesis abundant protein-like [Cucurbita pepo subsp. pepo] >KAG6596235.1 18 kDa seed maturation protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027777.1 18 kDa seed maturation protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP+EKDMA  RKEER+  AE++KQQARA HA ERQA   + TG H GL TGT
Sbjct: 36  KVDKMRAHDPLEKDMASERKEERLHGAELDKQQARAEHATERQA--ASKTGAHTGLTTGT 95

Query: 61  GTGVG-----PTTG 70
           GTG G     PT G
Sbjct: 96  GTGTGTRAYDPTVG 107

[Close]

BLAST of MS023007 vs. NCBI nr
Match: XP_031737964.1 (11 kDa late embryogenesis abundant protein-like [Cucumis sativus] >KGN59308.1 hypothetical protein Csa_001802 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 7.8e-10
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP EKDMA  RK+ERI EAE++KQQAR  HAAERQ  TGTG GT  GL TGT
Sbjct: 36  KVDKMRAHDPFEKDMARERKDERIQEAELDKQQARVEHAAERQ--TGTGPGTRTGLGTGT 95

Query: 61  GTGVGPTTG 70
            T   PT G
Sbjct: 96  HT-YDPTVG 101

[Close]

BLAST of MS023007 vs. NCBI nr
Match: XP_022971427.1 (11 kDa late embryogenesis abundant protein-like [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP+EKDMA  RKEER+  AE++KQQARA HAAERQA   + TG H GL TGT
Sbjct: 36  KVDKMRAHDPLEKDMASERKEERLHGAELDKQQARAEHAAERQA--ASKTGAHTGLTTGT 95

Query: 61  GT-GVGPTTG 70
           GT    PT G
Sbjct: 96  GTRAYDPTVG 103

[Close]

BLAST of MS023007 vs. ExPASy Swiss-Prot
Match: P46515 (11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.9e-05
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 3   DKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATG--- 62
           +KM AHDP++K+MA  +KEER  EAE  KQ A+  +AA++Q  TG GTGTH+   T    
Sbjct: 38  EKMTAHDPMQKEMAREKKEERKHEAEYEKQAAKEHNAAQKQT-TGIGTGTHSYTTTNVTG 97

Query: 63  --TGTG 64
             TGTG
Sbjct: 98  HRTGTG 102

[Close]

BLAST of MS023007 vs. ExPASy Swiss-Prot
Match: Q00747 (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-04
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 1  QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
          + ++M   DP++K+MA  +KE+R+  AE+ K+ A+A HAAE+Q    TGTGT    ATG 
Sbjct: 25 KAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQHAAEKQGAATTGTGTTGYGATGN 84

Query: 61 GT 63
           T
Sbjct: 85 HT 86

[Close]

BLAST of MS023007 vs. ExPASy TrEMBL
Match: A0A6J1DVT9 (11 kDa late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111024847 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-20
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQA    GTGT AGLATGT
Sbjct: 36  KVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQA----GTGTLAGLATGT 95

Query: 61  GTGVGPTTGT 71
           GTGVGPTTGT
Sbjct: 96  GTGVGPTTGT 101

[Close]

BLAST of MS023007 vs. ExPASy TrEMBL
Match: A0A6J1FQA5 (11 kDa late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111445987 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP+EKDMA  RKEER+  AE++KQQARA HA ERQA   + TG H GL TGT
Sbjct: 36  KVDKMRAHDPLEKDMASERKEERLHGAELDKQQARAEHATERQA--ASKTGAHTGLTTGT 95

Query: 61  GTGVG-----PTTG 70
           GTG G     PT G
Sbjct: 96  GTGTGTRAYDPTVG 107

[Close]

BLAST of MS023007 vs. ExPASy TrEMBL
Match: A0A0A0LBV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808370 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-10
Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP EKDMA  RK+ERI EAE++KQQAR  HAAERQ  TGTG GT  GL TGT
Sbjct: 36  KVDKMRAHDPFEKDMARERKDERIQEAELDKQQARVEHAAERQ--TGTGPGTRTGLGTGT 95

Query: 61  GTGVGPTTG 70
            T   PT G
Sbjct: 96  HT-YDPTVG 101

[Close]

BLAST of MS023007 vs. ExPASy TrEMBL
Match: A0A6J1I1X4 (11 kDa late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC111470154 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP+EKDMA  RKEER+  AE++KQQARA HAAERQA   + TG H GL TGT
Sbjct: 36  KVDKMRAHDPLEKDMASERKEERLHGAELDKQQARAEHAAERQA--ASKTGAHTGLTTGT 95

Query: 61  GT-GVGPTTG 70
           GT    PT G
Sbjct: 96  GTRAYDPTVG 103

[Close]

BLAST of MS023007 vs. ExPASy TrEMBL
Match: A0A5D3DPJ3 (18 kDa seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005470 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 45/68 (66.18%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   QVDKMRAHDPVEKDMAEARKEERITEAEINKQQARAAHAAERQAGTGTGTGTHAGLATGT 60
           +VDKMRAHDP EK+M   +K+ERI EA+++KQQAR  HAAERQAGTG GT T  GL TGT
Sbjct: 36  KVDKMRAHDPYEKEMVREKKDERIQEADLDKQQARFEHAAERQAGTGPGTRT--GLGTGT 95

Query: 61  GTGVGPTT 69
           G    PTT
Sbjct: 96  GPEPTPTT 101

The following BLAST results are available for this feature:

BLAST of MS023007 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158338.1	1.4e-19	91.43	11 kDa late embryogenesis abundant protein-like [Momordica charantia]	[more]
XP_038905932.1	7.6e-13	73.53	11 kDa late embryogenesis abundant protein-like [Benincasa hispida]	[more]
XP_022940345.1	6.0e-10	64.86	11 kDa late embryogenesis abundant protein-like [Cucurbita moschata] >XP_0235397...	[more]
XP_031737964.1	7.8e-10	69.57	11 kDa late embryogenesis abundant protein-like [Cucumis sativus] >KGN59308.1 hy...	[more]
XP_022971427.1	3.0e-09	67.14	11 kDa late embryogenesis abundant protein-like [Cucurbita maxima]	[more]

BLAST of MS023007 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46515	7.9e-05	51.52	11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=...	[more]
Q00747	1.8e-04	45.16	Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1	[more]

BLAST of MS023007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVT9	6.9e-20	91.43	11 kDa late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FQA5	2.9e-10	64.86	11 kDa late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LBV1	3.8e-10	69.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808370 PE=3 SV=1	[more]
A0A6J1I1X4	1.4e-09	67.14	11 kDa late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3DPJ3	1.9e-09	66.18	18 kDa seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MS023007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..70
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 46	coord: 2..62
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 2..43 e-value: 5.0E-10 score: 39.9
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 2..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023007.1	MS023007.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy