MS022970 (gene) Bitter gourd (TR) v1

Overview


Name	MS022970
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	scaffold357: 235354 .. 235492 (-)
RNA-Seq Expression	MS022970
Synteny	MS022970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

NNCATTTGTCTCATACACTATGGGGATGGTGAGAAAAATATATATTTTACATCCGAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTT

mRNA sequence

NNCATTTGTCTCATACACTATGGGGATGGTGAGAAATATATTTTACATCCGAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTT

Coding sequence (CDS)

NNCATTTGTCTCATACACTATGGGGATGGTGAGAAATATATTTTACATCCGAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTT

Protein sequence

XICLIHYGDGEKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV

Homology

[Close]

BLAST of MS022970 vs. NCBI nr
Match: AJO25152.1 (ribosomal protein L2 [Solanum lycopersicum] >AJW75090.1 ribosomal protein L2 [Vassobia dichotoma] >AMX21746.1 ribosomal protein L2 [Iochroma parvifolium] >ANC95098.1 ribosomal protein L2 [Dunalia spathulata] >EDR7571783.1 hypothetical protein [Salmonella enterica subsp. enterica serovar Newport] >QHE65456.1 ribosomal protein L2 [Anisodus tanguticus])

HSP 1 Score: 89.4 bits (220), Expect = 8.9e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. NCBI nr
Match: XP_007162786.1 (hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris] >ESW34780.1 hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris])

HSP 1 Score: 89.4 bits (220), Expect = 8.9e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGE KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. NCBI nr
Match: YP_010039958.1 (ribosomal protein L2 [Mucuna pruriens] >QOY46433.1 ribosomal protein L2 [Mucuna pruriens])

HSP 1 Score: 89.4 bits (220), Expect = 8.9e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGE KYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. NCBI nr
Match: YP_009569066.1 (ribosomal protein L2 [Ancistrocladus tectorius] >YP_009569087.1 ribosomal protein L2 [Ancistrocladus tectorius] >QBC66386.1 ribosomal protein L2 [Ancistrocladus tectorius] >QBC66387.1 ribosomal protein L2 [Ancistrocladus tectorius])

HSP 1 Score: 89.4 bits (220), Expect = 8.9e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. NCBI nr
Match: YP_009556302.1 (ribosomal protein L2 [Simmondsia chinensis] >YP_009556315.1 ribosomal protein L2 [Simmondsia chinensis] >QBC70145.1 ribosomal protein L2 [Simmondsia chinensis] >QBC70146.1 ribosomal protein L2 [Simmondsia chinensis] >QBC72630.1 ribosomal protein L2 [Simmondsia chinensis] >QBC72631.1 ribosomal protein L2 [Simmondsia chinensis])

HSP 1 Score: 89.4 bits (220), Expect = 8.9e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. ExPASy Swiss-Prot
Match: A0A398 (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.4e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA 45
           ICLIHYGDGEK YILHPRGA+IGDTIVSGTEVPIKMGNALPLSA
Sbjct: 89  ICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSA 132

[Close]

BLAST of MS022970 vs. ExPASy Swiss-Prot
Match: Q2PMM3 (50S ribosomal protein L2-B, chloroplastic OS=Glycine max OX=3847 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.5e-17
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 2   ICLIHYGDGE-KYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 44
           ICLIHYGDGE KYILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Sbjct: 89  ICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 131

[Close]

BLAST of MS022970 vs. ExPASy Swiss-Prot
Match: A6MMG4 (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.8e-17
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA 45
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPI MGNALPLSA
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSA 132

[Close]

BLAST of MS022970 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.8e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS 44
           ICLIHYGDGEK YILHPRGAIIGDTI+SGTEVPIKMGNALPLS
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLS 131

[Close]

BLAST of MS022970 vs. ExPASy Swiss-Prot
Match: Q8S8V3 (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-16
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS 44
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of MS022970 vs. ExPASy TrEMBL
Match: A0A5P8HA57 (50S ribosomal protein L2, chloroplastic OS=Quercus stewardiana OX=1497783 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. ExPASy TrEMBL
Match: A0A7T7D7D8 (Ribosomal protein L2 OS=Ammopiptanthus nanus OX=111851 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. ExPASy TrEMBL
Match: A0A6H1YHE2 (50S ribosomal protein L2, chloroplastic OS=Quercus coccinea OX=354624 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. ExPASy TrEMBL
Match: A0A6B9QGQ4 (50S ribosomal protein L2, chloroplastic OS=Nitraria tangutorum OX=357929 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. ExPASy TrEMBL
Match: A0A7S8HPY4 (Ribosomal protein L2 OS=Sibiraea angustata OX=1055022 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 46
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 133

[Close]

BLAST of MS022970 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS 44
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

[Close]

BLAST of MS022970 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-17
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 2   ICLIHYGDGEK-YILHPRGAIIGDTIVSGTEVPIKMGNALPLS 44
           ICLIHYGDGEK YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131

The following BLAST results are available for this feature:

BLAST of MS022970 vs. NCBI nr


Match Name	E-value	Identity	Description
AJO25152.1	8.9e-15	97.78	ribosomal protein L2 [Solanum lycopersicum] >AJW75090.1 ribosomal protein L2 [Va...	[more]
XP_007162786.1	8.9e-15	97.78	hypothetical protein PHAVU_001G180400g [Phaseolus vulgaris] >ESW34780.1 hypothet...	[more]
YP_010039958.1	8.9e-15	97.78	ribosomal protein L2 [Mucuna pruriens] >QOY46433.1 ribosomal protein L2 [Mucuna ...	[more]
YP_009569066.1	8.9e-15	97.78	ribosomal protein L2 [Ancistrocladus tectorius] >YP_009569087.1 ribosomal protei...	[more]
YP_009556302.1	8.9e-15	97.78	ribosomal protein L2 [Simmondsia chinensis] >YP_009556315.1 ribosomal protein L2...	[more]

BLAST of MS022970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A398	4.4e-17	95.45	50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B P...	[more]
Q2PMM3	7.5e-17	97.67	50S ribosomal protein L2-B, chloroplastic OS=Glycine max OX=3847 GN=rpl2-B PE=3 ...	[more]
A6MMG4	9.8e-17	95.45	50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rp...	[more]
Q14F95	9.8e-17	95.35	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q8S8V3	1.7e-16	95.35	50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-...	[more]

BLAST of MS022970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5P8HA57	4.3e-15	97.78	50S ribosomal protein L2, chloroplastic OS=Quercus stewardiana OX=1497783 GN=rpl...	[more]
A0A7T7D7D8	4.3e-15	97.78	Ribosomal protein L2 OS=Ammopiptanthus nanus OX=111851 GN=rpl2 PE=4 SV=1	[more]
A0A6H1YHE2	4.3e-15	97.78	50S ribosomal protein L2, chloroplastic OS=Quercus coccinea OX=354624 GN=rpl2 PE...	[more]
A0A6B9QGQ4	4.3e-15	97.78	50S ribosomal protein L2, chloroplastic OS=Nitraria tangutorum OX=357929 GN=rpl2...	[more]
A0A7S8HPY4	4.3e-15	97.78	Ribosomal protein L2 OS=Sibiraea angustata OX=1055022 GN=rpl2 PE=4 SV=1	[more]

BLAST of MS022970 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	1.2e-17	95.35	ribosomal protein L2	[more]
ATCG01310.1	1.2e-17	95.35	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..43
None	No IPR available	PANTHER	PTHR13691:SF55	50S RIBOSOMAL PROTEIN L2, CHLOROPLASTIC	coord: 1..43
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022970.1	MS022970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome