MS022890 (gene) Bitter gourd (TR) v1

Overview
NameMS022890
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold29: 336365 .. 336484 (-)
RNA-Seq ExpressionMS022890
SyntenyMS022890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATTGCTCAAGTGGGCTGTTGGGCGTAATCGTAAGAAACACTTTTCATTTCATCCCTGTAGTTCCGCTTCTTGCTCGAAAAATGAAGAAAGACTTGTCGGAAATCGCCGGTTGG

mRNA sequence

ATGGCAAATTGCTCAAGTGGGCTGTTGGGCGTAATCGTAAGAAACACTTTTCATTTCATCCCTGTAGTTCCGCTTCTTGCTCGAAAAATGAAGAAAGACTTGTCGGAAATCGCCGGTTGG

Coding sequence (CDS)

ATGGCAAATTGCTCAAGTGGGCTGTTGGGCGTAATCGTAAGAAACACTTTTCATTTCATCCCTGTAGTTCCGCTTCTTGCTCGAAAAATGAAGAAAGACTTGTCGGAAATCGCCGGTTGG

Protein sequence

MANCSSGLLGVIVRNTFHFIPVVPLLARKMKKDLSEIAGW
Homology
[Close]
BLAST of MS022890 vs. NCBI nr
Match: KAA0050707.1 (hypothetical protein E6C27_scaffold48863G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MANCSSGLLGVIVRNTFHFIPVVPLLARKMKKDLSEIAGW 41
          MANCSSGLLGV VRNT +FIPVVPLL+RKMKKDLSEIAGW
Sbjct: 1  MANCSSGLLGVRVRNTLNFIPVVPLLSRKMKKDLSEIAGW 40

[Close]
BLAST of MS022890 vs. NCBI nr
Match: CAB4074376.1 (unnamed protein product [Lactuca saligna] >CAB4076223.1 unnamed protein product [Lactuca saligna])

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1  MANCSSGLLGVIVRNTFHFIPVVPLLARKMKKDLSEIAGW 41
          M NCSSGLLGVIVRNTFHFIPVVPLLA K++KDLSEIA W
Sbjct: 1  MENCSSGLLGVIVRNTFHFIPVVPLLALKIRKDLSEIASW 40

[Close]
BLAST of MS022890 vs. ExPASy TrEMBL
Match: A0A5A7U8J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48863G00120 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MANCSSGLLGVIVRNTFHFIPVVPLLARKMKKDLSEIAGW 41
          MANCSSGLLGV VRNT +FIPVVPLL+RKMKKDLSEIAGW
Sbjct: 1  MANCSSGLLGVRVRNTLNFIPVVPLLSRKMKKDLSEIAGW 40

[Close]
BLAST of MS022890 vs. ExPASy TrEMBL
Match: A0A6S7M1K9 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3205 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-11
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1  MANCSSGLLGVIVRNTFHFIPVVPLLARKMKKDLSEIAGW 41
          M NCSSGLLGVIVRNTFHFIPVVPLLA K++KDLSEIA W
Sbjct: 1  MENCSSGLLGVIVRNTFHFIPVVPLLALKIRKDLSEIASW 40

The following BLAST results are available for this feature:
BLAST of MS022890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050707.13.1e-1190.00hypothetical protein E6C27_scaffold48863G00120 [Cucumis melo var. makuwa][more]
CAB4074376.15.3e-1187.50unnamed protein product [Lactuca saligna] >CAB4076223.1 unnamed protein product ... [more]
BLAST of MS022890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS022890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8J41.5e-1190.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6S7M1K92.6e-1187.50Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3205 PE=4 SV=1[more]
BLAST of MS022890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022890.1MS022890.1mRNA