MS022876 (gene) Bitter gourd (TR) v1

Overview


Name	MS022876
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold29: 278656 .. 278866 (+)
RNA-Seq Expression	MS022876
Synteny	MS022876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAGCCACCCGGTGGTGTGGTACCTAGTGGGTTTAGTACGCCGCCCTGCCAAAACGGCGCCGAAACAAACAAAAAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGC

mRNA sequence

GCGAGCCACCCGGTGGTGTGGTACCTAGTGGGTTTAGTACGCCGCCCTGCCAAAACGGCGCCGAAACAAAAAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGC

Coding sequence (CDS)

GCGAGCCACCCGGTGGTGTGGTACCTAGTGGGTTTAGTACGCCGCCCTGCCAAAACGGCGCCGAAACAAAAAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGC

Protein sequence

ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQG

Homology

[Close]

BLAST of MS022876 vs. NCBI nr
Match: PLY81935.1 (hypothetical protein LSAT_5X16200 [Lactuca sativa])

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 49  ASRPVVWYVVGLV-RPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCY 108

Query: 61  NGNYNGKQG 70
           NGNYNGKQG
Sbjct: 109 NGNYNGKQG 116

[Close]

BLAST of MS022876 vs. NCBI nr
Match: GEX76084.1 (DNA polymerase-like [Tanacetum cinerariifolium])

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 713 ASRPVVWYVVGLV-RPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCY 772

Query: 61  NGNYNGKQG 70
           NGNYNGKQG
Sbjct: 773 NGNYNGKQG 780

[Close]

BLAST of MS022876 vs. NCBI nr
Match: PLY62414.1 (hypothetical protein LSAT_5X16680 [Lactuca sativa])

HSP 1 Score: 139.8 bits (351), Expect = 8.8e-30
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 53  ASRPVVWYVVGLV-RPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCY 112

Query: 61  NGNYNGKQG 70
           NGNYNGKQG
Sbjct: 113 NGNYNGKQG 120

[Close]

BLAST of MS022876 vs. NCBI nr
Match: KAG8363149.1 (hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia])

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 4   PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGN 63
           PVVWY+VGLV RPAKTAPK++KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGN
Sbjct: 455 PVVWYVVGLV-RPAKTAPKERKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNGN 514

Query: 64  YNGKQG 70
           YNGKQG
Sbjct: 515 YNGKQG 519

[Close]

BLAST of MS022876 vs. NCBI nr
Match: KAG8362786.1 (hypothetical protein BUALT_BualtUnG0044000 [Buddleja alternifolia])

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 4   PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGN 63
           PVVWY+VGLV RPAKTAPK++KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCYNGN
Sbjct: 497 PVVWYVVGLV-RPAKTAPKERKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNGN 556

Query: 64  YNGKQG 70
           YNGKQG
Sbjct: 557 YNGKQG 561

[Close]

BLAST of MS022876 vs. ExPASy TrEMBL
Match: A0A2J6L3N0 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 49  ASRPVVWYVVGLV-RPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCY 108

Query: 61  NGNYNGKQG 70
           NGNYNGKQG
Sbjct: 109 NGNYNGKQG 116

[Close]

BLAST of MS022876 vs. ExPASy TrEMBL
Match: A0A2J6JHW2 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           AS PVVWY+VGLV RPAKTAPKQ KRCVPHSR TASDILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 53  ASRPVVWYVVGLV-RPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCY 112

Query: 61  NGNYNGKQG 70
           NGNYNGKQG
Sbjct: 113 NGNYNGKQG 120

[Close]

BLAST of MS022876 vs. ExPASy TrEMBL
Match: A0A4D8Y8D7 (Uncharacterized protein ycf68 OS=Salvia splendens OX=180675 GN=Saspl_047302 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 4   PVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGN 63
           PVVWY+VGLV RPAKTAPK++KRCVPHSR T SDILEEGGDDVKSAWPLWAGPHTCYNGN
Sbjct: 71  PVVWYVVGLV-RPAKTAPKERKRCVPHSRRTTSDILEEGGDDVKSAWPLWAGPHTCYNGN 130

Query: 64  YNGKQG 70
           YNGKQG
Sbjct: 131 YNGKQG 135

[Close]

BLAST of MS022876 vs. ExPASy TrEMBL
Match: A0A5A7V4U9 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00030 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 60/69 (86.96%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           ASHPVVWY VGLV RPAKT P   +RCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 34  ASHPVVWYEVGLV-RPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCY 93

Query: 61  NGNYNGKQG 70
           NGN NGKQG
Sbjct: 94  NGNDNGKQG 101

[Close]

BLAST of MS022876 vs. ExPASy TrEMBL
Match: A0A6V7PYW1 (Uncharacterized protein ycf68 OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19151 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   ASHPVVWYLVGLVRRPAKTAPKQKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCY 60
           AS PVVWY+V +VR P   APKQ+KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCY
Sbjct: 46  ASRPVVWYVVVIVRGP---APKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCY 105

Query: 61  NGNYNGKQG 70
           NGN NGKQG
Sbjct: 106 NGNDNGKQG 111

The following BLAST results are available for this feature:

BLAST of MS022876 vs. NCBI nr


Match Name	E-value	Identity	Description
PLY81935.1	8.8e-30	92.75	hypothetical protein LSAT_5X16200 [Lactuca sativa]	[more]
GEX76084.1	8.8e-30	92.75	DNA polymerase-like [Tanacetum cinerariifolium]	[more]
PLY62414.1	8.8e-30	92.75	hypothetical protein LSAT_5X16680 [Lactuca sativa]	[more]
KAG8363149.1	9.7e-29	92.42	hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia]	[more]
KAG8362786.1	9.7e-29	92.42	hypothetical protein BUALT_BualtUnG0044000 [Buddleja alternifolia]	[more]

BLAST of MS022876 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2J6L3N0	4.2e-30	92.75	Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=...	[more]
A0A2J6JHW2	4.2e-30	92.75	Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=...	[more]
A0A4D8Y8D7	1.4e-28	90.91	Uncharacterized protein ycf68 OS=Salvia splendens OX=180675 GN=Saspl_047302 PE=3...	[more]
A0A5A7V4U9	1.2e-27	86.96	Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A6V7PYW1	2.2e-26	84.06	Uncharacterized protein ycf68 OS=Ananas comosus var. bracteatus OX=296719 GN=CB5...	[more]

BLAST of MS022876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..41
None	No IPR available	PANTHER	PTHR34890:SF2	SUBFAMILY NOT NAMED	coord: 14..69
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 14..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022876.1	MS022876.1	mRNA