MS022862 (gene) Bitter gourd (TR) v1

Overview


Name	MS022862
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Integrase catalytic domain-containing protein
Location	scaffold29: 234310 .. 234481 (+)
RNA-Seq Expression	MS022862
Synteny	MS022862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTT

mRNA sequence

TTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGCATCCATCCAATGCATTCTTTTCGATCTT

Coding sequence (CDS)

TTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGCATCCATCCAATGCATTCTTTTCGATCTT

Protein sequence

FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPASIQCILFDL

Homology

[Close]

BLAST of MS022862 vs. NCBI nr
Match: GEX14218.1 (putative mitochondrial protein [Tanacetum cinerariifolium])

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1   FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPASIQCILFDL 58
           FAKFEKSKERRLATELGYGFPIGDPWITDGIS WPFASESVLPSQC ASIQCILFDL
Sbjct: 50  FAKFEKSKERRLATELGYGFPIGDPWITDGISSWPFASESVLPSQCRASIQCILFDL 106

[Close]

BLAST of MS022862 vs. NCBI nr
Match: KAA0066854.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK28002.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 50/55 (90.91%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPASIQCILF 56
          FAKFEKSKERRLA ELGY FPI DPWITD ISPWPFASESVLPSQC ASIQCILF
Sbjct: 4  FAKFEKSKERRLAKELGYSFPIRDPWITDEISPWPFASESVLPSQCRASIQCILF 58

[Close]

BLAST of MS022862 vs. NCBI nr
Match: KAD4384359.1 (hypothetical protein E3N88_24527 [Mikania micrantha])

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1   FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
           FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 164 FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 210

[Close]

BLAST of MS022862 vs. NCBI nr
Match: PHT25004.1 (hypothetical protein CQW23_35343 [Capsicum baccatum])

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1   FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
           FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 58  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 104

[Close]

BLAST of MS022862 vs. NCBI nr
Match: YP_173374.1 (hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical protein NitaMp164 [Nicotiana tabacum] >OIT02104.1 putative mitochondrial protein [Nicotiana attenuata] >OIT22081.1 putative mitochondrial protein [Nicotiana attenuata] >OIT29650.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34301.1 putative mitochondrial protein [Nicotiana attenuata] >OIT34302.1 putative mitochondrial protein [Nicotiana attenuata])

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
          FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 50 FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 96

[Close]

BLAST of MS022862 vs. ExPASy Swiss-Prot
Match: P93276 (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-22
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
          FAKF KSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 4  FAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 50

[Close]

BLAST of MS022862 vs. ExPASy TrEMBL
Match: A0A5A7VHN2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002390 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 50/55 (90.91%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPASIQCILF 56
          FAKFEKSKERRLA ELGY FPI DPWITD ISPWPFASESVLPSQC ASIQCILF
Sbjct: 4  FAKFEKSKERRLAKELGYSFPIRDPWITDEISPWPFASESVLPSQCRASIQCILF 58

[Close]

BLAST of MS022862 vs. ExPASy TrEMBL
Match: Q5M9R1 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
          FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 50 FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 96

[Close]

BLAST of MS022862 vs. ExPASy TrEMBL
Match: A0A1J6INJ4 (Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
          FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 50 FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 96

[Close]

BLAST of MS022862 vs. ExPASy TrEMBL
Match: A0A161X3X2 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024277 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
          FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 50 FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 96

[Close]

BLAST of MS022862 vs. ExPASy TrEMBL
Match: A0A5C7GP19 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.3e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 1   FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
           FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 511 FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 557

[Close]

BLAST of MS022862 vs. TAIR 10
Match: ATMG00030.1 (hypothetical protein )

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-23
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  FAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 48
          FAKF KSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP
Sbjct: 4  FAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCP 50

The following BLAST results are available for this feature:

BLAST of MS022862 vs. NCBI nr


Match Name	E-value	Identity	Description
GEX14218.1	1.3e-23	96.49	putative mitochondrial protein [Tanacetum cinerariifolium]	[more]
KAA0066854.1	4.0e-20	90.91	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK28002.1 putative m...	[more]
KAD4384359.1	8.9e-20	100.00	hypothetical protein E3N88_24527 [Mikania micrantha]	[more]
PHT25004.1	8.9e-20	100.00	hypothetical protein CQW23_35343 [Capsicum baccatum]	[more]
YP_173374.1	8.9e-20	100.00	hypothetical protein NitaMp027 [Nicotiana tabacum] >YP_173501.1 hypothetical pro...	[more]

BLAST of MS022862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93276	4.4e-22	97.87	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MS022862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHN2	1.9e-20	90.91	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
Q5M9R1	4.3e-20	100.00	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1	[more]
A0A1J6INJ4	4.3e-20	100.00	Putative mitochondrial protein OS=Nicotiana attenuata OX=49451 GN=A4A49_32027 PE...	[more]
A0A161X3X2	4.3e-20	100.00	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024277 ...	[more]
A0A5C7GP19	4.3e-20	100.00	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028250 PE=4 SV=1	[more]

BLAST of MS022862 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00030.1	3.1e-23	97.87	hypothetical protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044987	Uncharacterized mitochondrial protein AtMg00030-like	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022862.1	MS022862.1	mRNA