MS022856 (gene) Bitter gourd (TR) v1

Overview
NameMS022856
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold29: 213122 .. 213196 (+)
RNA-Seq ExpressionMS022856
SyntenyMS022856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTCGGAGGGACTTCCCGAATGACCGTACCAGGGAATTCTAC

mRNA sequence

CTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTCGGAGGGACTTCCCGAATGACCGTACCAGGGAATTCTAC

Coding sequence (CDS)

CTCCAGCTCTCGCAAGAATTGTATGGGAGTCGTCCTCGGAGGGACTTCCCGAATGACCGTACCAGGGAATTCTAC

Protein sequence

LQLSQELYGSRPRRDFPNDRTREFY
Homology
[Close]
BLAST of MS022856 vs. NCBI nr
Match: KAF5947271.1 (hypothetical protein HYC85_013228 [Camellia sinensis])

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   LQLSQELYGSRPRRDFPNDRTREFY 26
           LQLSQELYGSRPRRDFPNDRT EFY
Sbjct: 114 LQLSQELYGSRPRRDFPNDRTEEFY 138

[Close]
BLAST of MS022856 vs. ExPASy TrEMBL
Match: A0A7J7H4Y1 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_013228 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-04
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 1   LQLSQELYGSRPRRDFPNDRTREFY 26
           LQLSQELYGSRPRRDFPNDRT EFY
Sbjct: 114 LQLSQELYGSRPRRDFPNDRTEEFY 138

The following BLAST results are available for this feature:
BLAST of MS022856 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5947271.12.3e-0496.00hypothetical protein HYC85_013228 [Camellia sinensis][more]
BLAST of MS022856 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS022856 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J7H4Y11.1e-0496.00Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_013228 PE=4 SV=1[more]
BLAST of MS022856 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022856.1MS022856.1mRNA