MS022854 (gene) Bitter gourd (TR) v1

Overview
NameMS022854
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 1
Locationscaffold29: 211441 .. 211569 (-)
RNA-Seq ExpressionMS022854
SyntenyMS022854
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGAAAGCGCTTACCGAGGAATAGAAAGGGAGGACAGGTTGGTTCGAGGGCCCGTTGGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGAGGCGAGAGTGTCACGTACGGTT

mRNA sequence

ATGAAAAGAAAGCGCTTACCGAGGAATAGAAAGGGAGGACAGGTTGGTTCGAGGGCCCGTTGGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGAGGCGAGAGTGTCACGTACGGTT

Coding sequence (CDS)

ATGAAAAGAAAGCGCTTACCGAGGAATAGAAAGGGAGGACAGGTTGGTTCGAGGGCCCGTTGGTCAAAGGAAAGGGGAGGTCCTGATGCCGGGACGGAGCCGTATGAGGCGAGAGTGTCACGTACGGTT

Protein sequence

MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV
Homology
BLAST of MS022854 vs. NCBI nr
Match: KAF4349940.1 (hypothetical protein G4B88_002362 [Cannabis sativa])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRT 43
          MKR RLPRNRKGGQVGSR RWSKERGGPD+GTEPY+ARVSRT
Sbjct: 1  MKRNRLPRNRKGGQVGSRTRWSKERGGPDSGTEPYDARVSRT 42

BLAST of MS022854 vs. NCBI nr
Match: KAA0047140.1 (hypothetical protein E6C27_scaffold49037G00040 [Cucumis melo var. makuwa] >TYJ98795.1 hypothetical protein E5676_scaffold78538G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEAR 39
          M  K+   NRKGGQVGSR RWSKERGGPDAGTEP + R
Sbjct: 1  MNEKKALTNRKGGQVGSRTRWSKERGGPDAGTEPPDER 38

BLAST of MS022854 vs. NCBI nr
Match: XP_016901905.1 (PREDICTED: putative RNA-binding protein YlmH isoform X1 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV 44
          M  K++  N KGGQVGSR  WSKERGG D  TEPYEARVS TV
Sbjct: 1  MNEKKVLTNGKGGQVGSRTCWSKERGGLDVETEPYEARVSCTV 43

BLAST of MS022854 vs. NCBI nr
Match: KAA0058821.1 (putative RNA-binding protein YlmH isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV 44
          M  K++  N KGGQVGSR  WSKERGG D  TEPYEARVS TV
Sbjct: 1  MNEKKVLTNGKGGQVGSRTCWSKERGGLDVETEPYEARVSCTV 43

BLAST of MS022854 vs. NCBI nr
Match: XP_016901906.1 (PREDICTED: uncharacterized protein LOC103496076 isoform X3 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV 44
          M  K++  N KGGQVGSR  WSKERGG D  TEPYEARVS TV
Sbjct: 1  MNEKKVLTNGKGGQVGSRTCWSKERGGLDVETEPYEARVSCTV 43

BLAST of MS022854 vs. ExPASy TrEMBL
Match: A0A7J6DW83 (NADH-ubiquinone oxidoreductase chain 1 OS=Cannabis sativa OX=3483 GN=G4B88_002362 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-12
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRT 43
          MKR RLPRNRKGGQVGSR RWSKERGGPD+GTEPY+ARVSRT
Sbjct: 1  MKRNRLPRNRKGGQVGSRTRWSKERGGPDSGTEPYDARVSRT 42

BLAST of MS022854 vs. ExPASy TrEMBL
Match: A0A5A7TVE9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78538G00010 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-05
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEAR 39
          M  K+   NRKGGQVGSR RWSKERGGPDAGTEP + R
Sbjct: 1  MNEKKALTNRKGGQVGSRTRWSKERGGPDAGTEPPDER 38

BLAST of MS022854 vs. ExPASy TrEMBL
Match: A0A5D3CIR0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00930 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-05
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV 44
          M  K++  N KGGQVGSR  WSKERGG D  TEPYEARVS TV
Sbjct: 1  MNEKKVLTNGKGGQVGSRTCWSKERGGLDVETEPYEARVSCTV 43

BLAST of MS022854 vs. ExPASy TrEMBL
Match: A0A5A7UZA5 (Putative RNA-binding protein YlmH isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00160 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-05
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV 44
          M  K++  N KGGQVGSR  WSKERGG D  TEPYEARVS TV
Sbjct: 1  MNEKKVLTNGKGGQVGSRTCWSKERGGLDVETEPYEARVSCTV 43

BLAST of MS022854 vs. ExPASy TrEMBL
Match: A0A1S4E1P4 (putative RNA-binding protein YlmH isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-05
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 1  MKRKRLPRNRKGGQVGSRARWSKERGGPDAGTEPYEARVSRTV 44
          M  K++  N KGGQVGSR  WSKERGG D  TEPYEARVS TV
Sbjct: 1  MNEKKVLTNGKGGQVGSRTCWSKERGGLDVETEPYEARVSCTV 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF4349940.11.1e-1190.48hypothetical protein G4B88_002362 [Cannabis sativa][more]
KAA0047140.11.0e-0473.68hypothetical protein E6C27_scaffold49037G00040 [Cucumis melo var. makuwa] >TYJ98... [more]
XP_016901905.11.4e-0469.77PREDICTED: putative RNA-binding protein YlmH isoform X1 [Cucumis melo][more]
KAA0058821.11.4e-0469.77putative RNA-binding protein YlmH isoform X1 [Cucumis melo var. makuwa][more]
XP_016901906.11.4e-0469.77PREDICTED: uncharacterized protein LOC103496076 isoform X3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6DW835.5e-1290.48NADH-ubiquinone oxidoreductase chain 1 OS=Cannabis sativa OX=3483 GN=G4B88_00236... [more]
A0A5A7TVE95.0e-0573.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CIR06.6e-0569.77Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G0... [more]
A0A5A7UZA56.6e-0569.77Putative RNA-binding protein YlmH isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S4E1P46.6e-0569.77putative RNA-binding protein YlmH isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022854.1MS022854.1mRNA