MS022842 (gene) Bitter gourd (TR) v1

Overview


Name	MS022842
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Myb-like domain-containing protein
Location	scaffold29: 170328 .. 170552 (-)
RNA-Seq Expression	MS022842
Synteny	MS022842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTC

mRNA sequence

TTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTC

Coding sequence (CDS)

TTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTC

Protein sequence

LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEF

Homology

[Close]

BLAST of MS022842 vs. NCBI nr
Match: EPS74531.1 (hypothetical protein M569_00248, partial [Genlisea aurea])

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
          LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE
Sbjct: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60

Query: 61 EAPLLPKLRGYFAEF 76
          EAPLLPKLRGYFAEF
Sbjct: 61 EAPLLPKLRGYFAEF 75

[Close]

BLAST of MS022842 vs. NCBI nr
Match: KAG6483622.1 (hypothetical protein ZIOFF_060273 [Zingiber officinale])

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
           LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE
Sbjct: 40  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 99

Query: 61  EAPLLPKLRGYFAEF 76
           EAPLLPKLRGYFAEF
Sbjct: 100 EAPLLPKLRGYFAEF 114

[Close]

BLAST of MS022842 vs. NCBI nr
Match: KAG6474749.1 (hypothetical protein ZIOFF_068688 [Zingiber officinale])

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
           LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE
Sbjct: 244 LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 303

Query: 61  EAPLLPKLRGYFAEF 76
           EAPLLPKLRGYFAEF
Sbjct: 304 EAPLLPKLRGYFAEF 318

[Close]

BLAST of MS022842 vs. NCBI nr
Match: PWA54452.1 (hypothetical protein CTI12_AA435150 [Artemisia annua])

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
           LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE
Sbjct: 107 LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 166

Query: 61  EAPLLPKLRGYFAEF 76
           EAPLLPKLRGYFAEF
Sbjct: 167 EAPLLPKLRGYFAEF 181

[Close]

BLAST of MS022842 vs. NCBI nr
Match: XP_020999426.1 (uncharacterized protein LOC110281477 [Arachis duranensis])

HSP 1 Score: 160.6 bits (405), Expect = 5.2e-36
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
           L PPFTGASVAGSPV+RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLC 
Sbjct: 41  LLPPFTGASVAGSPVLRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCG 100

Query: 61  EAPLLPKLRGYFAEF 76
            APLLPKLRGYFAEF
Sbjct: 101 GAPLLPKLRGYFAEF 115

[Close]

BLAST of MS022842 vs. ExPASy TrEMBL
Match: A0A2U1LZL2 (Myb-like domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA435150 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.4e-39
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
           LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE
Sbjct: 107 LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 166

Query: 61  EAPLLPKLRGYFAEF 76
           EAPLLPKLRGYFAEF
Sbjct: 167 EAPLLPKLRGYFAEF 181

[Close]

BLAST of MS022842 vs. ExPASy TrEMBL
Match: S8DAJ4 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00248 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.4e-39
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
          LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE
Sbjct: 1  LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60

Query: 61 EAPLLPKLRGYFAEF 76
          EAPLLPKLRGYFAEF
Sbjct: 61 EAPLLPKLRGYFAEF 75

[Close]

BLAST of MS022842 vs. ExPASy TrEMBL
Match: A0A6P5NU31 (uncharacterized protein LOC110281477 OS=Arachis duranensis OX=130453 GN=LOC110281477 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.5e-36
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   LRPPFTGASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCE 60
           L PPFTGASVAGSPV+RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLC 
Sbjct: 41  LLPPFTGASVAGSPVLRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCG 100

Query: 61  EAPLLPKLRGYFAEF 76
            APLLPKLRGYFAEF
Sbjct: 101 GAPLLPKLRGYFAEF 115

[Close]

BLAST of MS022842 vs. ExPASy TrEMBL
Match: A0A166GEI3 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001521 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 17  RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEF 76
           RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEF
Sbjct: 199 RSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPKLRGYFAEF 257

[Close]

BLAST of MS022842 vs. ExPASy TrEMBL
Match: A0A427AP02 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00020298 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.0e-29
Identity = 62/68 (91.18%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 8   ASVAGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHCDPLCEEAPLLPK 67
           A   GSPVIRSPTSLTFRHWAGVSPHTWSYDFAET VFGKQSP PGH DPLCEEAPLLPK
Sbjct: 34  AEFXGSPVIRSPTSLTFRHWAGVSPHTWSYDFAETYVFGKQSPEPGHYDPLCEEAPLLPK 93

Query: 68  LRGYFAEF 76
           LRGYFAEF
Sbjct: 94  LRGYFAEF 101

The following BLAST results are available for this feature:

BLAST of MS022842 vs. NCBI nr


Match Name	E-value	Identity	Description
EPS74531.1	1.1e-38	100.00	hypothetical protein M569_00248, partial [Genlisea aurea]	[more]
KAG6483622.1	1.1e-38	100.00	hypothetical protein ZIOFF_060273 [Zingiber officinale]	[more]
KAG6474749.1	1.1e-38	100.00	hypothetical protein ZIOFF_068688 [Zingiber officinale]	[more]
PWA54452.1	1.1e-38	100.00	hypothetical protein CTI12_AA435150 [Artemisia annua]	[more]
XP_020999426.1	5.2e-36	94.67	uncharacterized protein LOC110281477 [Arachis duranensis]	[more]

BLAST of MS022842 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1LZL2	5.4e-39	100.00	Myb-like domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA435150...	[more]
S8DAJ4	5.4e-39	100.00	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00248 PE=...	[more]
A0A6P5NU31	2.5e-36	94.67	uncharacterized protein LOC110281477 OS=Arachis duranensis OX=130453 GN=LOC11028...	[more]
A0A166GEI3	1.3e-29	100.00	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001521 ...	[more]
A0A427AP02	3.0e-29	91.18	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00020298 PE=4 SV=1	[more]

BLAST of MS022842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022842.1	MS022842.1	mRNA