MS022762 (gene) Bitter gourd (TR) v1

Overview
NameMS022762
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine/arginine-rich splicing factor 11
Locationscaffold73: 309435 .. 311408 (+)
RNA-Seq ExpressionMS022762
SyntenyMS022762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGTGGTAGCTCGTCTCAAAGCGAGCCTGAAACCTCGGGTCGTTCAAAGCGGCATAAGAAGAATGATAGAACGAAGAAGGTTGATGTGTTTATATTTTGTCTTTTCCTTGCGTGTTTATATTGTAGTTTCACTGGTAGTTTTTCACCTTGTTATGTTACTCCATCTCTCTGCATTTTAGGACAAGGAGAGAGAGCGAAGTAAGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGGTAGACCACTTGCCTGTTTGGGTACTATTTTTCCTTTTTGATGAACTGAGAAACGTCATGAAAATCACCTCTTTGCATGTTTACCTGGATCTACATTCTTTTGGCATATTACTACAGAATGTATTGTGATTAAGTAGATGTTGCTTTTAACACATGTATTCAGTGTTTTGAAAGGCTAAAGGCAGTGTGGATGTTTTCCTTTTTTTCTTAATCCTTTCTAGGAGAGTTTAGACATAAGCTTTGAGGTGGTATGAGATGGAAACCTCAATTTAAATAAAAAGCTATTAATAAAATCATAAAAATTTGCTATCGAGTATTACCAAACATAATAAGTACAGAGCAAATCAAGTCTATATATTGTCACTTCCTTAAATAAAGATTTTAAGAAGTTATTTATGTTTTTATCTTTGATGTTTACTTTGTTCTTGGTGGTAAAAGTAGTACTGGGCTGAATTACCCCACCTTGTGGGTGTATTAGCATAGCATTAGATACATTAACTTTTTGTAAGAATAAGCATCAAAATAATATTTTTCTCCCAAATGAGACATAAAGACTCTAAGCCTCTTAATGCATTTTATGTAAGATGCATAAACCACCTATAATCTAAAGAAGGCATAAGTTCTGAGGCCAAAAAGTTGAGCCTCTCTTTAAGACAAGCCACGAAATCCTTCGACTAGAGCTTAAAGTAATGATCTATTTGTCAAATTATCTAATTGTTTCTAATCATGCAATCTTTAGACTACATCTATGACTGGTTTTGTTTTTGGAGTGGTTTTATAATTGGATATAAACTGAGATGCTTCCATATAATGTGAGATGCTTCTATTACTTTTTACTGATTGGTTCTTTGAAATTGGAGTTGGGGTCTGTGGCATGATGATCAATAATTGGTTTTGTTTTTGGAGTGGTTTCTGAATTGGATATAATGTGAGATGCTTCTATGACTATTTACTGATTGGTTCTTTGAAATTGGAGTTGGGGTCTGTGGCATGATGATCGGGCTGTTGATTTACTTGCCTGATGGTTTGTTGTGCGGATTTGTCCTGGCATTCGGAGTCGATGTATAGAAGCAGCCAGAAGAGAGAAGTAGCAGCCCTGTACAGCTTTCTAAGGTTCCCTTTCATAGCCCTGTTTACTTTCAGTTCTCTCTTTTTTTGGCATCTCGTATCTCAACTTTTCTGTTGCTCCACATATTTAACAGTTCCTAGCTCGTGAGAAGGATGATGGTGCCCGACGGAGTGCTGTCTCTGGCAAAAAGGTGAAAGAACCATCTCTAAACATTGAAAAAATTGTTGGAGTGCTTTTAACTGTTTCTAGCTAAAAGTACTTTTGCCATGACCAAACAGACTTCTCACTCAAACTCATCATGTTTGGGGGTGATTTATAAATGCTTTTAGAAAAAGTAAAAAACCCTTAAAAGTGTTGACGCATTTGGTAAGAAAACACTTTTTGGGTATTATTGGCCCAAGGGATTGTTGGGAAATACTTGAAAAAGCACTTTTAAGAGTATAAACTCAAACATAATAGTGACATTTTACTAGTAATCATATTACTTTTGCTAAAATCACTTATTTAGAAACAAACACAGTAATGGTGCTGCTATTGATAGTTAAGTTGACTTGTAATTACTTTGGTGCAGATTTTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGAT

mRNA sequence

AGAAGTGGTAGCTCGTCTCAAAGCGAGCCTGAAACCTCGGGTCGTTCAAAGCGGCATAAGAAGAATGATAGAACGAAGAAGGACAAGGAGAGAGAGCGAAGTAAGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGAAGCAGCCAGAAGAGAGAAGTAGCAGCCCTGTACAGCTTTCTAAGTTCCTAGCTCGTGAGAAGGATGATGGTGCCCGACGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGAT

Coding sequence (CDS)

AGAAGTGGTAGCTCGTCTCAAAGCGAGCCTGAAACCTCGGGTCGTTCAAAGCGGCATAAGAAGAATGATAGAACGAAGAAGGACAAGGAGAGAGAGCGAAGTAAGAGTCATCACCATAAAAGGCGTAAACATAAAGCTAAAGAGAAGCAGCCAGAAGAGAGAAGTAGCAGCCCTGTACAGCTTTCTAAGTTCCTAGCTCGTGAGAAGGATGATGGTGCCCGACGGAGTGCTGTCTCTGGCAAAAAGATTTTGTTGAAACTTGATAAATCAAAGGAAGACAAAGCTGAGGAAAACAAAAGAAATGAATTGCTGAAATTCTTGAACTCTAGCTTTGAT

Protein sequence

RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Homology
BLAST of MS022762 vs. NCBI nr
Match: XP_022136184.1 (serine/arginine-rich splicing factor 11 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ
Sbjct: 72  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 183

BLAST of MS022762 vs. NCBI nr
Match: XP_008450603.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           RS SSS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQ
Sbjct: 72  RSNSSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEKQPEE-SSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

BLAST of MS022762 vs. NCBI nr
Match: XP_038879353.1 (NKAP family protein [Benincasa hispida] >XP_038879354.1 NKAP family protein [Benincasa hispida] >XP_038879355.1 NKAP family protein [Benincasa hispida])

HSP 1 Score: 174.5 bits (441), Expect = 5.2e-40
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           R+ SSSQSEPETSGRSKRHK+NDR K+DKERERS+SHHHKRRKHKAKEKQPEE SSSPVQ
Sbjct: 72  RTNSSSQSEPETSGRSKRHKRNDRAKRDKERERSRSHHHKRRKHKAKEKQPEE-SSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

BLAST of MS022762 vs. NCBI nr
Match: XP_031738322.1 (NKAP family protein isoform X1 [Cucumis sativus] >KAE8653363.1 hypothetical protein Csa_007551 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-39
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 0

Query: 4   SSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSK 63
           SSS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSK
Sbjct: 74  SSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEKQPEE-SSSPVQLSK 133

Query: 64  FLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           FLAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 134 FLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 181

BLAST of MS022762 vs. NCBI nr
Match: XP_011659818.1 (NKAP family protein isoform X2 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-39
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 5   SSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKF 64
           SS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKF
Sbjct: 73  SSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEKQPEE-SSSPVQLSKF 132

Query: 65  LAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 133 LAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

BLAST of MS022762 vs. ExPASy TrEMBL
Match: A0A6J1C3K8 (serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111007940 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ
Sbjct: 72  RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 183

BLAST of MS022762 vs. ExPASy TrEMBL
Match: A0A1S3BQ85 (peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           RS SSS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQ
Sbjct: 72  RSNSSSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEKQPEE-SSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLAREKDDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLAREKDDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 182

BLAST of MS022762 vs. ExPASy TrEMBL
Match: A0A0A0LVZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.6e-39
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 5   SSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQLSKF 64
           SS+SEPETS RSKRHKKNDRTKKDKERERS+SHHHKRRKHKAKEKQPEE SSSPVQLSKF
Sbjct: 73  SSESEPETSSRSKRHKKNDRTKKDKERERSRSHHHKRRKHKAKEKQPEE-SSSPVQLSKF 132

Query: 65  LAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LAREKDDG RRSAVSGKKILLKLDKSKEDKAEE KRNELLKFLNSSFD
Sbjct: 133 LAREKDDGTRRSAVSGKKILLKLDKSKEDKAEETKRNELLKFLNSSFD 179

BLAST of MS022762 vs. ExPASy TrEMBL
Match: A0A6J1HZG5 (probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469042 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.5e-37
Identity = 104/112 (92.86%), Postives = 104/112 (92.86%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           RS SSSQSEPE SGRSKRHKKND TK  KERERSKS HHKRRKHKAKEKQPEERSSSPVQ
Sbjct: 72  RSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSQHHKRRKHKAKEKQPEERSSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 180

BLAST of MS022762 vs. ExPASy TrEMBL
Match: A0A6J1EV15 (serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437872 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.5e-37
Identity = 104/112 (92.86%), Postives = 104/112 (92.86%), Query Frame = 0

Query: 1   RSGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQ 60
           RS SSSQSEPE SGRSKRHKKND TK  KERERSKS HHKRRKHKAKEKQPEERSSSPVQ
Sbjct: 72  RSHSSSQSEPEMSGRSKRHKKNDGTK--KERERSKSRHHKRRKHKAKEKQPEERSSSPVQ 131

Query: 61  LSKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           LSKFLARE DDG RRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD
Sbjct: 132 LSKFLARE-DDGTRRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 180

BLAST of MS022762 vs. TAIR 10
Match: AT5G27860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 9.2e-27
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 0

Query: 2   SGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQL 61
           S SSS+S      +S+RHKK+++ KK K++ERSKSH HKR K++ ++K   E SS PV+L
Sbjct: 67  SDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKKGEGEGSSGPVKL 126

Query: 62  SKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           SKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 127 SKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

BLAST of MS022762 vs. TAIR 10
Match: AT5G27860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 9.2e-27
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 0

Query: 2   SGSSSQSEPETSGRSKRHKKNDRTKKDKERERSKSHHHKRRKHKAKEKQPEERSSSPVQL 61
           S SSS+S      +S+RHKK+++ KK K++ERSKSH HKR K++ ++K   E SS PV+L
Sbjct: 67  SDSSSESSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKKGEGEGSSGPVKL 126

Query: 62  SKFLAREKDDGARRSAVSGKKILLKLDKSKEDKAEENKRNELLKFLNSSFD 113
           SKFL R+KDDG RRSAVSGKKILLK+DKSKEDKA E+KRNELLKFLN+SFD
Sbjct: 127 SKFLNRDKDDGERRSAVSGKKILLKVDKSKEDKAAESKRNELLKFLNASFD 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136184.17.0e-45100.00serine/arginine-rich splicing factor 11 [Momordica charantia][more]
XP_008450603.11.4e-4094.64PREDICTED: peptidyl-prolyl cis-trans isomerase G [Cucumis melo][more]
XP_038879353.15.2e-4092.86NKAP family protein [Benincasa hispida] >XP_038879354.1 NKAP family protein [Ben... [more]
XP_031738322.13.4e-3994.50NKAP family protein isoform X1 [Cucumis sativus] >KAE8653363.1 hypothetical prot... [more]
XP_011659818.17.5e-3994.44NKAP family protein isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C3K83.4e-45100.00serine/arginine-rich splicing factor 11 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A1S3BQ856.6e-4194.64peptidyl-prolyl cis-trans isomerase G OS=Cucumis melo OX=3656 GN=LOC103492142 PE... [more]
A0A0A0LVZ33.6e-3994.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569230 PE=4 SV=1[more]
A0A6J1HZG54.5e-3792.86probable splicing factor, arginine/serine-rich 7 isoform X1 OS=Cucurbita maxima ... [more]
A0A6J1EV154.5e-3792.86serine/arginine-rich splicing factor 11 isoform X1 OS=Cucurbita moschata OX=3662... [more]
Match NameE-valueIdentityDescription
AT5G27860.19.2e-2766.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G27860.29.2e-2766.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..81
NoneNo IPR availablePANTHERPTHR35760SI:CH211-22I13.2coord: 2..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022762.1MS022762.1mRNA