MS022718 (gene) Bitter gourd (TR) v1

Overview
NameMS022718
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Locationscaffold41: 758612 .. 758749 (+)
RNA-Seq ExpressionMS022718
SyntenyMS022718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTTTGCCGCTGCAATATCGCCTTCGCGAATCCTACGCCTCTGCAGACTCCGCCGTCATCCGTGACGGAGCTAAGGTATCGCCACAATAGCAACGCGGCCATTGCGGTATTTCAAGATCTGTCCAAAAACGTGAGT

mRNA sequence

CCTCTTTGCCGCTGCAATATCGCCTTCGCGAATCCTACGCCTCTGCAGACTCCGCCGTCATCCGTGACGGAGCTAAGGTATCGCCACAATAGCAACGCGGCCATTGCGGTATTTCAAGATCTGTCCAAAAACGTGAGT

Coding sequence (CDS)

CCTCTTTGCCGCTGCAATATCGCCTTCGCGAATCCTACGCCTCTGCAGACTCCGCCGTCATCCGTGACGGAGCTAAGGTATCGCCACAATAGCAACGCGGCCATTGCGGTATTTCAAGATCTGTCCAAAAACGTGAGT

Protein sequence

PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS
Homology
BLAST of MS022718 vs. NCBI nr
Match: XP_022155701.1 (RING-H2 finger protein ATL52-like [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCRCNIA  NP P +TPP SVT L YRH S+AA+ V QD S+NVS
Sbjct: 187 PLCRCNIASTNPNPPETPPPSVTALGYRHRSDAAVVVVQDPSENVS 232

BLAST of MS022718 vs. NCBI nr
Match: KAG6593770.1 (RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCR NIA  NP P +TPP  VT L YRH+S+AA+ V QDLS NVS
Sbjct: 183 PLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLSANVS 228

BLAST of MS022718 vs. NCBI nr
Match: XP_022964349.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCR NIA  NP P +TPP  VT L YRH+S+AA+ V QDLS NVS
Sbjct: 183 PLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLSANVS 228

BLAST of MS022718 vs. NCBI nr
Match: KAG7026103.1 (RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCR NIA  NP P +TPP  VT L YRH+S+AA+ V QDLS NVS
Sbjct: 183 PLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLSANVS 228

BLAST of MS022718 vs. NCBI nr
Match: XP_023000254.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCR NIA  NP P +TPP  VT L YRH+S+AA+ V QDLS NVS
Sbjct: 183 PLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLSANVS 228

BLAST of MS022718 vs. ExPASy TrEMBL
Match: A0A6J1DSH1 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111022765 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCRCNIA  NP P +TPP SVT L YRH S+AA+ V QD S+NVS
Sbjct: 187 PLCRCNIASTNPNPPETPPPSVTALGYRHRSDAAVVVVQDPSENVS 232

BLAST of MS022718 vs. ExPASy TrEMBL
Match: A0A6J1KJE3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494536 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCR NIA  NP P +TPP  VT L YRH+S+AA+ V QDLS NVS
Sbjct: 183 PLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLSANVS 228

BLAST of MS022718 vs. ExPASy TrEMBL
Match: A0A6J1HMW7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464384 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           PLCR NIA  NP P +TPP  VT L YRH+S+AA+ V QDLS NVS
Sbjct: 183 PLCRSNIASTNPPPQETPPPPVTALGYRHSSDAAVVVVQDLSANVS 228

BLAST of MS022718 vs. ExPASy TrEMBL
Match: A0A6J1L482 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111498996 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-07
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           P CR NI   NP P +TPP SVT L YRH+S+AA+ V QDLS+NVS
Sbjct: 182 PFCRSNITPTNPPPPETPPPSVTVLGYRHSSDAAVVVVQDLSENVS 227

BLAST of MS022718 vs. ExPASy TrEMBL
Match: A0A6J1H2X8 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459995 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-07
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1   PLCRCNIAFANPTPLQTPPSSVTELRYRHNSNAAIAVFQDLSKNVS 47
           P CR NI   NP P +TPP SVT L YRH+S+AA+ V QDLS+NVS
Sbjct: 182 PFCRSNITPTNPPPPETPPPSVTVLGYRHSSDAAVVVVQDLSENVS 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155701.14.8e-0867.39RING-H2 finger protein ATL52-like [Momordica charantia][more]
KAG6593770.15.3e-0765.22RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022964349.15.3e-0765.22RING-H2 finger protein ATL52-like [Cucurbita moschata][more]
KAG7026103.15.3e-0765.22RING-H2 finger protein ATL51, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_023000254.15.3e-0765.22RING-H2 finger protein ATL52-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSH12.3e-0867.39RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102276... [more]
A0A6J1KJE32.6e-0765.22RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111494536 P... [more]
A0A6J1HMW72.6e-0765.22RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464384... [more]
A0A6J1L4829.8e-0763.04RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111498996 P... [more]
A0A6J1H2X89.8e-0763.04RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459995... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022718.1MS022718.1mRNA