MS022717 (gene) Bitter gourd (TR) v1

Overview
NameMS022717
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold41: 753960 .. 754124 (+)
RNA-Seq ExpressionMS022717
SyntenyMS022717
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAATATGGGATCAATGGTTGATGAAATGTGGATACCAATTACTTATGAGAAGCTACCAGACTTATGCTATAGTTGTGGAAAGGTATGGCATATTTTACAGGACTGTGAACGGTACTTGGAAGGTACAAAGAAGACCTACATATGGCAATTGTATGATAGAAAT

mRNA sequence

CTGAATATGGGATCAATGGTTGATGAAATGTGGATACCAATTACTTATGAGAAGCTACCAGACTTATGCTATAGTTGTGGAAAGGTATGGCATATTTTACAGGACTGTGAACGGTACTTGGAAGGTACAAAGAAGACCTACATATGGCAATTGTATGATAGAAAT

Coding sequence (CDS)

CTGAATATGGGATCAATGGTTGATGAAATGTGGATACCAATTACTTATGAGAAGCTACCAGACTTATGCTATAGTTGTGGAAAGGTATGGCATATTTTACAGGACTGTGAACGGTACTTGGAAGGTACAAAGAAGACCTACATATGGCAATTGTATGATAGAAAT

Protein sequence

LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLEGTKKTYIWQLYDRN
Homology
BLAST of MS022717 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 3  MGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCE 38
          +G M  E WIP++YEKLPD CY CG+V H++Q+C+
Sbjct: 46 LGVMAKEKWIPVSYEKLPDFCYKCGRVGHVVQECK 80

BLAST of MS022717 vs. NCBI nr
Match: KAF4350434.1 (hypothetical protein F8388_005458 [Cannabis sativa] >KAF4377321.1 hypothetical protein G4B88_011156 [Cannabis sativa])

HSP 1 Score: 53.1 bits (126), Expect = 8.6e-04
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 6   MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE 42
           M DE+WI   YE+LPD CY CG + H+   C R+LE
Sbjct: 191 MNDELWIDCRYERLPDFCYECGIIGHVFDKCSRFLE 226

BLAST of MS022717 vs. NCBI nr
Match: KAF4373373.1 (hypothetical protein F8388_026204 [Cannabis sativa])

HSP 1 Score: 53.1 bits (126), Expect = 8.6e-04
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 6   MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE 42
           M DE+WI   YE+LPD CY CG + H+   C R+LE
Sbjct: 100 MNDELWIDCRYERLPDFCYECGIIGHVFDKCSRFLE 135

BLAST of MS022717 vs. ExPASy TrEMBL
Match: A0A0A0LNB5 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLEGT--KKTYIWQLYDR 55
           + +G+M  E  IP+TYEKL D CY+CG + H+LQ+CE  +EG   K+  IW L +R
Sbjct: 78  IKLGAMAKEKCIPVTYEKLSDFCYNCGILGHVLQECEVKVEGPGYKRIKIWSLAER 133

BLAST of MS022717 vs. ExPASy TrEMBL
Match: A0A5D3C0K2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001040 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-06
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 3  MGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCE 38
          +G M  E WIP++YEKLPD CY CG+V H++Q+C+
Sbjct: 46 LGVMAKEKWIPVSYEKLPDFCYKCGRVGHVVQECK 80

BLAST of MS022717 vs. ExPASy TrEMBL
Match: A0A7J6DWD2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005458 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 6   MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE 42
           M DE+WI   YE+LPD CY CG + H+   C R+LE
Sbjct: 191 MNDELWIDCRYERLPDFCYECGIIGHVFDKCSRFLE 226

BLAST of MS022717 vs. ExPASy TrEMBL
Match: A0A7J6FRL2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_026204 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 6   MVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE 42
           M DE+WI   YE+LPD CY CG + H+   C R+LE
Sbjct: 100 MNDELWIDCRYERLPDFCYECGIIGHVFDKCSRFLE 135

BLAST of MS022717 vs. ExPASy TrEMBL
Match: A0A803P119 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-04
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 1   LNMGSMVDEMWIPITYEKLPDLCYSCGKVWHILQDCERYLE 42
           L +  +VD++W+ + YEKLPD+CY CG++ H    C  +LE
Sbjct: 516 LKITGLVDDLWVILKYEKLPDICYKCGRLGHTFLRCIEFLE 556

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046998.11.2e-0557.14reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta... [more]
KAF4350434.18.6e-0452.78hypothetical protein F8388_005458 [Cannabis sativa] >KAF4377321.1 hypothetical p... [more]
KAF4373373.18.6e-0452.78hypothetical protein F8388_026204 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNB53.1e-0748.21CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 P... [more]
A0A5D3C0K25.8e-0657.14Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68... [more]
A0A7J6DWD24.2e-0452.78Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005458 PE=4 SV=1[more]
A0A7J6FRL24.2e-0452.78Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_026204 PE=4 SV=1[more]
A0A803P1195.4e-0443.90Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 8..37
e-value: 4.1E-7
score: 29.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 23..38
score: 8.713199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022717.1MS022717.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding