MS022558 (gene) Bitter gourd (TR) v1

Overview


Name	MS022558
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
Location	scaffold88: 192430 .. 195960 (+)
RNA-Seq Expression	MS022558
Synteny	MS022558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGAATCAGTCTTTTTTTATAAAAGACACTATCCACAAATTGCAGCTTGCACTCCTTGAGGGCATTCAAAATGAGAACCAGCTATTTGCAGCTGGGTCTCTAATGTCTCGCAGTGACTATGAAGATGTGGTGACTGAGCGGTCTATTGCTAACCTCTGTGGATATCCATTATGCCATTCTAATTTGTCGCCTGATAATACTAGGAAAGGCCGGTACAGAATTTCATTAAAAGACCATAAGGTGTATGATTTACAAGAGACGTATAAGTACTGCTCTTCTACTTGCCTCATTAACAGCCGTGCCTTTGCTGGAAGATTGCAAGAAGAGAGGTGCTCGGTTATGAATCCTGAGAAACTTAAAGAAATTCTGAGGCTGTTCGAGAATCTGAGTTTTGATTCCAAGGAAAATATGGGAAATAATTGTGATTTGGGCCTATCAGACCTTGAAATTCAGGAGAAGGCAGAAAGCAATGTTGGAGAAGTTCCTATTGAAGAGTGGATGGGACCATCAAATGCAATTGAAGGCTATGTGCCGCACAGAGATCATAAGACCAAGACTTCACCCAGTAAAGATGGCAAAGAATCCGAGAATGGTAACTTCTTTTCAATTTATTTTCTAGTATGCCCAAGGTTTACTGTATCTGATTGTTGAATTCCATATTGGAGAAGCTTATGCATTCAAAAGATCTTTCTAGCAAAAGAAAATTGTTCTTAGAATGCTAAAATGTAGAAGTTGAGTGGAACTACAGATTTATTTACATCGGTGGTTATAAGTGAGATTAAGTACTCTGTCGTAGGGTCTATAAAGCTAAAAGTAATGAATTGGGGTTTTTCTACTATGTTGATAAAAAAAACGAAAAAAAAAGAAATAAAGAAAAGAAAGGGAAAAAGGAAAAAGGAAGAAAGAGTAAAACAGTGTATTTATATGTACCTGTTTGTTAAATTGAGTTTTGATGCTCTATTTTAGGTTCTAAAGCTAAAATTAAGCCACTGGACGGTGGAAAACATTTCTTCAGCGATCTGTCCTTCACCCGTACTATAATCACAGATGAAGAGTATAGTGTTTCAAAGATATCGTCTGGTTTGAAAGAGATGACTTTTGATACTAAGTTGAAGGCACAAACAGGAGAGTCAAAGGAACAATTCACCATTTTGGAAACACCATCCGCTGCAGCTCCCGTGAAAAACAGTGTTGAACAGAAACCAAGAGGATTAAAAGAAAGGAATAAAGTATCAGCCAACGGAAAAAGTACTACTAATTTGTCTGATGCTCCTTCAACTTCAAACCAGTGTGATACTAGTTGCAATTTAACGACAGAACCAAATGGTGGATCCAGTGATCTTAGTGGAACCCAGATCAAGCCCTCCCTTAAACAACCAGGCAAGAAAAACTTGCGTCGCTCTGTAACCTGGGCAGATGAAAAAATCGATGACACCAGTATCAGCAACCTTCCAGAAGTCAGAGAAATTGGGAAGACAAAGCATAATTCTAGAGTCACAAGCAATTTGGCAACTGTCGACAATGATAATGAGGACATATTACGTATTGAATCTGCTGAAGCCTGTGCAATGGCACTGAGCCTAGCAGCTGAAGCGATAAATTCTGGGCAAAATGTGGTGTCTGATGCAGGTATTCTACTATATGCATGATGATTGAGGTTAGTTATTGTACTACATGCTATAAAGATAATGTTACTTGTTTGGCCATTAGATGAGCTCTACCCCTGAAATTATTTCTAGATATCCAATTCCAAATTTTGACACACAAATCAATTATGGATCTAATTTTTTTGTCACTCCAGTTATTATTAGCATCAATATATATCATCTTTTACCTCTGTTATTCTTTTGCCTTGAAATAATGAAATTTCTGTAAAAAAACAATAGTGGCTCTTACTGGTTGTGAAAATTTGATTTATGAACGAGAACTAGATAGTTACTCAAATATTTTTTCCTTCTGTGCTCTGTTCTTTGTAATATCTCAAGGAATTTCATAGTTTTTCTGTGTTTGGCTCGTAATATTCAGTTTCGAATGCTGGAATTATTATATTGCCACGTCCAAGTGATGCCAACGAAGAAGCATCCATTAACGGTGATGATTTACCTGTACCACATTCAACCCCAGAGAGGCCAAACAAACCTGGGACATTACATTCTGATCTCTTTGATCCCAAAGACTCTTGGTATGATGCACCTCCAGAGGGTTTCAGCCTAAGTGTAAGCATTTTTTCCATTTTATTTCTCATTTTTCATTTTTTATGTACTCTTTTCTTCCTAACCTCAAATGTTTTTGTTTTTAGTTATCTTCTTTTGCAACTATGTGGATGGCAATTTTTGCATGGGTAACATCGTCTTCCCTGGCCTACATATATGGAAAAGATGAAAGTTTTCACGAGGAGTTTCTATATATTGATGGGAGGGAGTATCCTAAGAAAATAATTTCTGCTGATGGTCGATCTTCTGAAATCAAGCAAACACTTGCTGGATGTCTAACACGGTCAATACCAGGACTTGCTTCTGAACTCAAGCTATCAACCCCAATATCAAGTTTGGAGCATGGAATGGTATTGATGAAATAATTATGAGACTCGTGTTCTTTTTTTCTCAATAAGTTTTGTTGGTGATAATTTGAAAATTTACATTATGGGTTTGCATATGCAGTGCCGATAATTATTATTTTCATTGTGTTAATATGTATATTTAGTATCTGTGGAAATTCTTGGTTTTGACACTTAAAAACACTGGCAACTAGTTAGGAAAATTTTTATAGGAGAAAATAGTGGACGTTGAATTAGATTCTCCTGAGGAGTTAAGTTCTTAGGAGAAATGTCATCTGGAGTCCTCTTGGTTCATTAGGTTATAGAGATATTAGAAGGAGCGGAAACAGAGTTTAACTTATAAACTTCTTTTGGGACTTCTTTACTTTCTCCATTTCCAGATGCACTGCTCGTGAAAAGGATTTTTCTATTATTACCCCTTCTTGATAGGTTTCAAAGTTTTTTTTTGTTTAATTACTTTTTTTTGGGTTAAAAGTCCTTCCGGATGATTTCCTATCTCCTAATCCTTGTAGTAGTGGACCTTTTGTATTACTGGTGTTATTGATACAAGTTTCTTTCGACGTACGGCGTGTGAGTGGTGATTCAGTAGGTTGGGTCGACAGGCTGGGTGCTCGGGCATCAAACTGTCGGCACGGCTCCTCCTCATTGATTCGATGTGCCCCAAAGTAGTAGTATTTCGAGCAGCCGCTATGTGGATCAAAAAGGAAAAAAAAATTGATACGAGTTTCTTTTCCCTACGAAATATGTTATCGTGCTGCTGTTAATCCAGCTTTTGCAAATGAGGGACGTTGGTTCATCTTGTGCAGGGGCAATTGTTAGAGACTATGACTTTCCTTGATGCACTTCCAGCATTCAGAATGAAGCAGTGGCAAGTAATTGTTCTCCTATTTATAGAAGCTCTATCTGTTTGCCGGATCCCTTCAGTTGCCTCTCAAATGACGAATAGTAGAAGTTTGTTTCACAAGGTT

mRNA sequence

ATGGCAAAGAATCAGTCTTTTTTTATAAAAGACACTATCCACAAATTGCAGCTTGCACTCCTTGAGGGCATTCAAAATGAGAACCAGCTATTTGCAGCTGGGTCTCTAATGTCTCGCAGTGACTATGAAGATGTGGTGACTGAGCGGTCTATTGCTAACCTCTGTGGATATCCATTATGCCATTCTAATTTGTCGCCTGATAATACTAGGAAAGGCCGGTACAGAATTTCATTAAAAGACCATAAGGTGTATGATTTACAAGAGACGTATAAGTACTGCTCTTCTACTTGCCTCATTAACAGCCGTGCCTTTGCTGGAAGATTGCAAGAAGAGAGGTGCTCGGTTATGAATCCTGAGAAACTTAAAGAAATTCTGAGGCTGTTCGAGAATCTGAGTTTTGATTCCAAGGAAAATATGGGAAATAATTGTGATTTGGGCCTATCAGACCTTGAAATTCAGGAGAAGGCAGAAAGCAATGTTGGAGAAGTTCCTATTGAAGAGTGGATGGGACCATCAAATGCAATTGAAGGCTATGTGCCGCACAGAGATCATAAGACCAAGACTTCACCCAGTAAAGATGGCAAAGAATCCGAGAATGGTTCTAAAGCTAAAATTAAGCCACTGGACGGTGGAAAACATTTCTTCAGCGATCTGTCCTTCACCCGTACTATAATCACAGATGAAGAGTATAGTGTTTCAAAGATATCGTCTGGTTTGAAAGAGATGACTTTTGATACTAAGTTGAAGGCACAAACAGGAGAGTCAAAGGAACAATTCACCATTTTGGAAACACCATCCGCTGCAGCTCCCGTGAAAAACAGTGTTGAACAGAAACCAAGAGGATTAAAAGAAAGGAATAAAGTATCAGCCAACGGAAAAAGTACTACTAATTTGTCTGATGCTCCTTCAACTTCAAACCAGTGTGATACTAGTTGCAATTTAACGACAGAACCAAATGGTGGATCCAGTGATCTTAGTGGAACCCAGATCAAGCCCTCCCTTAAACAACCAGGCAAGAAAAACTTGCGTCGCTCTGTAACCTGGGCAGATGAAAAAATCGATGACACCAGTATCAGCAACCTTCCAGAAGTCAGAGAAATTGGGAAGACAAAGCATAATTCTAGAGTCACAAGCAATTTGGCAACTGTCGACAATGATAATGAGGACATATTACGTATTGAATCTGCTGAAGCCTGTGCAATGGCACTGAGCCTAGCAGCTGAAGCGATAAATTCTGGGCAAAATGTGGTGTCTGATGCAGTTTCGAATGCTGGAATTATTATATTGCCACGTCCAAGTGATGCCAACGAAGAAGCATCCATTAACGGTGATGATTTACCTGTACCACATTCAACCCCAGAGAGGCCAAACAAACCTGGGACATTACATTCTGATCTCTTTGATCCCAAAGACTCTTGGTATGATGCACCTCCAGAGGGTTTCAGCCTAAGTTTATCTTCTTTTGCAACTATGTGGATGGCAATTTTTGCATGGGTAACATCGTCTTCCCTGGCCTACATATATGGAAAAGATGAAAGTTTTCACGAGGAGTTTCTATATATTGATGGGAGGGAGTATCCTAAGAAAATAATTTCTGCTGATGGTCGATCTTCTGAAATCAAGCAAACACTTGCTGGATGTCTAACACGGTCAATACCAGGACTTGCTTCTGAACTCAAGCTATCAACCCCAATATCAAGTTTGGAGCATGGAATGGGGCAATTGTTAGAGACTATGACTTTCCTTGATGCACTTCCAGCATTCAGAATGAAGCAGTGGCAAGTAATTGTTCTCCTATTTATAGAAGCTCTATCTGTTTGCCGGATCCCTTCAGTTGCCTCTCAAATGACGAATAGTAGAAGTTTGTTTCACAAGGTT

Coding sequence (CDS)

ATGGCAAAGAATCAGTCTTTTTTTATAAAAGACACTATCCACAAATTGCAGCTTGCACTCCTTGAGGGCATTCAAAATGAGAACCAGCTATTTGCAGCTGGGTCTCTAATGTCTCGCAGTGACTATGAAGATGTGGTGACTGAGCGGTCTATTGCTAACCTCTGTGGATATCCATTATGCCATTCTAATTTGTCGCCTGATAATACTAGGAAAGGCCGGTACAGAATTTCATTAAAAGACCATAAGGTGTATGATTTACAAGAGACGTATAAGTACTGCTCTTCTACTTGCCTCATTAACAGCCGTGCCTTTGCTGGAAGATTGCAAGAAGAGAGGTGCTCGGTTATGAATCCTGAGAAACTTAAAGAAATTCTGAGGCTGTTCGAGAATCTGAGTTTTGATTCCAAGGAAAATATGGGAAATAATTGTGATTTGGGCCTATCAGACCTTGAAATTCAGGAGAAGGCAGAAAGCAATGTTGGAGAAGTTCCTATTGAAGAGTGGATGGGACCATCAAATGCAATTGAAGGCTATGTGCCGCACAGAGATCATAAGACCAAGACTTCACCCAGTAAAGATGGCAAAGAATCCGAGAATGGTTCTAAAGCTAAAATTAAGCCACTGGACGGTGGAAAACATTTCTTCAGCGATCTGTCCTTCACCCGTACTATAATCACAGATGAAGAGTATAGTGTTTCAAAGATATCGTCTGGTTTGAAAGAGATGACTTTTGATACTAAGTTGAAGGCACAAACAGGAGAGTCAAAGGAACAATTCACCATTTTGGAAACACCATCCGCTGCAGCTCCCGTGAAAAACAGTGTTGAACAGAAACCAAGAGGATTAAAAGAAAGGAATAAAGTATCAGCCAACGGAAAAAGTACTACTAATTTGTCTGATGCTCCTTCAACTTCAAACCAGTGTGATACTAGTTGCAATTTAACGACAGAACCAAATGGTGGATCCAGTGATCTTAGTGGAACCCAGATCAAGCCCTCCCTTAAACAACCAGGCAAGAAAAACTTGCGTCGCTCTGTAACCTGGGCAGATGAAAAAATCGATGACACCAGTATCAGCAACCTTCCAGAAGTCAGAGAAATTGGGAAGACAAAGCATAATTCTAGAGTCACAAGCAATTTGGCAACTGTCGACAATGATAATGAGGACATATTACGTATTGAATCTGCTGAAGCCTGTGCAATGGCACTGAGCCTAGCAGCTGAAGCGATAAATTCTGGGCAAAATGTGGTGTCTGATGCAGTTTCGAATGCTGGAATTATTATATTGCCACGTCCAAGTGATGCCAACGAAGAAGCATCCATTAACGGTGATGATTTACCTGTACCACATTCAACCCCAGAGAGGCCAAACAAACCTGGGACATTACATTCTGATCTCTTTGATCCCAAAGACTCTTGGTATGATGCACCTCCAGAGGGTTTCAGCCTAAGTTTATCTTCTTTTGCAACTATGTGGATGGCAATTTTTGCATGGGTAACATCGTCTTCCCTGGCCTACATATATGGAAAAGATGAAAGTTTTCACGAGGAGTTTCTATATATTGATGGGAGGGAGTATCCTAAGAAAATAATTTCTGCTGATGGTCGATCTTCTGAAATCAAGCAAACACTTGCTGGATGTCTAACACGGTCAATACCAGGACTTGCTTCTGAACTCAAGCTATCAACCCCAATATCAAGTTTGGAGCATGGAATGGGGCAATTGTTAGAGACTATGACTTTCCTTGATGCACTTCCAGCATTCAGAATGAAGCAGTGGCAAGTAATTGTTCTCCTATTTATAGAAGCTCTATCTGTTTGCCGGATCCCTTCAGTTGCCTCTCAAATGACGAATAGTAGAAGTTTGTTTCACAAGGTT

Protein sequence

MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLCHSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEKLKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVPHRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLKEMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSDAPSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLFIEALSVCRIPSVASQMTNSRSLFHKV

Homology

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BLAST of MS022558 vs. NCBI nr
Match: XP_022145788.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica charantia] >XP_022145789.1 putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica charantia])

HSP 1 Score: 1216.4 bits (3146), Expect = 0.0e+00
Identity = 624/626 (99.68%), Postives = 626/626 (100.00%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSI+NLCGYPLC
Sbjct: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSISNLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
           HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK
Sbjct: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HRDHKTKTSPSKDGKESENGSKAKIKPLDGGK+FFSDLSFTRTIITDEEYSVSKISSGLK
Sbjct: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKNFFSDLSFTRTIITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSD 300
           EMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSD
Sbjct: 241 EMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSD 300

Query: 301 APSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN 360
           APSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN
Sbjct: 301 APSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN 360

Query: 361 LPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDA 420
           LPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDA
Sbjct: 361 LPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDA 420

Query: 421 VSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEG 480
           VSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEG
Sbjct: 421 VSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEG 480

Query: 481 FSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEI 540
           FSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEI
Sbjct: 481 FSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEI 540

Query: 541 KQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLF 600
           KQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLF
Sbjct: 541 KQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLF 600

Query: 601 IEALSVCRIPSVASQMTNSRSLFHKV 627
           IEALSVCRIPSVASQMTNSRSLFHKV
Sbjct: 601 IEALSVCRIPSVASQMTNSRSLFHKV 626

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BLAST of MS022558 vs. NCBI nr
Match: XP_038893419.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Benincasa hispida])

HSP 1 Score: 1005.4 bits (2598), Expect = 2.2e-289
Identity = 524/632 (82.91%), Postives = 561/632 (88.77%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQS  IKDT++KLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQSVLIKDTVYKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
           HSNLS DNTR+GRYRISLK+HKVYDLQETYKYCSSTCLINSRAF+GRLQ ERCSVMNPEK
Sbjct: 61  HSNLSSDNTRRGRYRISLKEHKVYDLQETYKYCSSTCLINSRAFSGRLQNERCSVMNPEK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLS DSKEN+GNNCDLG   LEIQE  ESN GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSLDSKENVGNNCDLG---LEIQENIESNTGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HRDHK  T PSKDGKES++GSKAKIKPL GGK FFSDLSFT TI+TDEEYSVSKISSGLK
Sbjct: 181 HRDHKIMTLPSKDGKESKDGSKAKIKPLGGGKDFFSDLSFTSTILTDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTG-----ESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EM FDT  K QTG     ESK+QFTILETP A AP KNSV +K RG KER KVSA  +ST
Sbjct: 241 EMAFDTDSKIQTGELCGKESKDQFTILETPHAPAPTKNSVGRKARGSKERTKVSATKEST 300

Query: 301 TNLSDAPSTSNQCDTSCNL-TTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSNQC+T+CNL T EP GGS+DLSGT+IK SLKQPGKKNL RSVTWADEK  
Sbjct: 301 NNLSDAPSTSNQCNTNCNLMTEEPRGGSNDLSGTEIKSSLKQPGKKNLHRSVTWADEKTV 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           DTSI NLPEVRE+GK K  SR+T NL   DNDN D+LR+ESAEACAMAL+ AAEAI+SGQ
Sbjct: 361 DTSIINLPEVREMGKKKECSRITRNLVNSDNDNGDLLRVESAEACAMALTQAAEAISSGQ 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           N VSDAVS AGIIILPRP+D NEEAS N  +   PHS+ E+ NK G L SDLFDP DSWY
Sbjct: 421 NEVSDAVSEAGIIILPRPNDGNEEASTNPVNASEPHSSSEKSNKLGVLRSDLFDPNDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           DAPPEGFSL+LSSFATMWMAIFAW+TSSSLAYIYGKD+ FHEEFLYIDG+EYP+KI+SAD
Sbjct: 481 DAPPEGFSLTLSSFATMWMAIFAWITSSSLAYIYGKDDKFHEEFLYIDGKEYPRKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMG LL+TMTFLDALPAFRMKQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGHLLDTMTFLDALPAFRMKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLFIEALSVC+IPS+AS M+NSRSL+HKV
Sbjct: 601 VIVLLFIEALSVCQIPSLASHMSNSRSLYHKV 629

[Close]

BLAST of MS022558 vs. NCBI nr
Match: XP_022955995.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 982.6 bits (2539), Expect = 1.5e-282
Identity = 513/632 (81.17%), Postives = 554/632 (87.66%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQ+  IKDT++KLQLALL+GI NENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQTILIKDTVYKLQLALLDGIHNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
            SNL  DNTRKGRYRISLK+HKVYDL+ETYKYCSSTCLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  QSNLPSDNTRKGRYRISLKEHKVYDLEETYKYCSSTCLINSRAFSGRLQDERCSVMNPGK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLS DSKEN  N+CDLG   LEIQEK ES++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSLDSKENTRNSCDLG---LEIQEKIESSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HR+H   TSP KDGKE ++GSKAKIK L  GK FFSD SF  T+ITDEEYSVSKISSGLK
Sbjct: 181 HRNHNIMTSPRKDGKELKDGSKAKIKQLGVGKDFFSDFSFATTVITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGE-----SKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EMTFDTK KAQTGE     S EQFTILETP   AP KNSV +K RG KER  VSA  +S 
Sbjct: 241 EMTFDTKSKAQTGEFCGKQSNEQFTILETPHGPAPTKNSVGRKARGSKERTNVSATAESN 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSN C T+CN+TT EPNGGS+DL+ TQIK SLKQPGKKNLRRSVTWAD K D
Sbjct: 301 NNLSDAPSTSNHCSTNCNITTEEPNGGSNDLNETQIKSSLKQPGKKNLRRSVTWADAKTD 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           +TSI NLPE RE+GKTK  SR+TSNL   DN NEDILR+ESAEACAMALS AAEAI SG+
Sbjct: 361 ETSIINLPEDREMGKTKECSRMTSNLVNADNGNEDILRVESAEACAMALSQAAEAITSGK 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           N VSDAVS AGIIILPRPSDANEEAS NG+++  PHS+ E+ NKPG L SDLFDP DSWY
Sbjct: 421 NEVSDAVSEAGIIILPRPSDANEEASTNGENISEPHSSSEKSNKPGILRSDLFDPNDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           D+PPEGFSL+LSSFATMWMAIFAW+TSSSLAYIYGKDE FHEEF YIDGREYP+KI+SAD
Sbjct: 481 DSPPEGFSLTLSSFATMWMAIFAWMTSSSLAYIYGKDEKFHEEFQYIDGREYPRKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMG LL+TMTFLDALPAFR KQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGCLLDTMTFLDALPAFRTKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLFIEALSVCRIPS+ SQ+++SRSLFHKV
Sbjct: 601 VIVLLFIEALSVCRIPSLDSQVSHSRSLFHKV 629

[Close]

BLAST of MS022558 vs. NCBI nr
Match: KAG6581990.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 980.7 bits (2534), Expect = 5.8e-282
Identity = 513/632 (81.17%), Postives = 553/632 (87.50%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQ+  IKDT++KLQLALL+GI NENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQTTLIKDTVYKLQLALLDGIHNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
            SNL  DNTRKGRYRISLK+HKVYDL+ETYKYCSSTCLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  QSNLPSDNTRKGRYRISLKEHKVYDLEETYKYCSSTCLINSRAFSGRLQDERCSVMNPGK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLS DSKEN  N+CDLG   LEIQEK ES++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSLDSKENTRNSCDLG---LEIQEKIESSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HR+H   T PSKDGKE ++GSKAKIK L  GK FFSD SF  T+ITDEEYSVSKISSGLK
Sbjct: 181 HRNHNIMTLPSKDGKELKDGSKAKIKQLGVGKDFFSDFSFATTVITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGE-----SKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EMTFDTK K QTGE     S EQFTILETP   AP KNSV +K RG KER  VSA  +S 
Sbjct: 241 EMTFDTKSKEQTGEFCGKQSNEQFTILETPHGPAPTKNSVGRKARGSKERTNVSATAESN 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSN C T+CN+TT EPNGGS+DL+ TQIK SLKQPGKKNLRRSVTWAD K D
Sbjct: 301 NNLSDAPSTSNHCSTNCNITTEEPNGGSNDLNETQIKSSLKQPGKKNLRRSVTWADAKTD 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           +TSI NLPE RE+GKTK  SR+TSNL   DN NEDILR+ESAEACAMALS AAEAI SGQ
Sbjct: 361 ETSIINLPEDREMGKTKECSRMTSNLVNADNGNEDILRVESAEACAMALSQAAEAITSGQ 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           N VSDAVS AGIIILPRPSDANEEAS NG+++  PHS+ E+ NKPG L SDLFDP DSWY
Sbjct: 421 NEVSDAVSEAGIIILPRPSDANEEASTNGENISEPHSSSEKSNKPGILRSDLFDPDDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           D+PPEGFSL+LSSFATMWMAIFAW+TSSSLAYIYGKDE FHEEF YIDGREYP+KI+SAD
Sbjct: 481 DSPPEGFSLTLSSFATMWMAIFAWMTSSSLAYIYGKDEKFHEEFQYIDGREYPRKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMG LL+TMTFLDALPAFR KQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGCLLDTMTFLDALPAFRTKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLFIEALSVCRIPS+ SQ+++SRSLFHKV
Sbjct: 601 VIVLLFIEALSVCRIPSLDSQVSHSRSLFHKV 629

[Close]

BLAST of MS022558 vs. NCBI nr
Match: XP_023528028.1 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 979.2 bits (2530), Expect = 1.7e-281
Identity = 512/632 (81.01%), Postives = 553/632 (87.50%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQ+  IKDT++KLQLALL+GI NENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQTILIKDTVYKLQLALLDGIHNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
            SNL  DNTRKGRYRISLK+HKVYDL+ETYKYCSSTCLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  QSNLPSDNTRKGRYRISLKEHKVYDLEETYKYCSSTCLINSRAFSGRLQDERCSVMNPGK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLS DSKEN  N+CDLG   LEIQEK  S++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSLDSKENTRNSCDLG---LEIQEKIVSSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HR+H   T PSKDGKE ++GSKAKIK L  GK FFSD SF  T+ITDEEYSVSKISSGLK
Sbjct: 181 HRNHNIMTLPSKDGKELKDGSKAKIKQLGVGKDFFSDFSFATTVITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGE-----SKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EMTFDTK K QTGE     S EQFTILETP + AP KNSV +K RG KER  VSA  +S 
Sbjct: 241 EMTFDTKSKEQTGEFCGKQSNEQFTILETPHSPAPTKNSVGRKARGSKERTNVSATAESN 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSN C T+CN+TT EPNGGS+DL+ TQIK SLKQPGKKNLRRSVTWAD K D
Sbjct: 301 NNLSDAPSTSNHCSTNCNITTEEPNGGSNDLNETQIKSSLKQPGKKNLRRSVTWADAKTD 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           +TSI NLPE RE+GKTK  SR+TSNL   DN NEDILR+ESAEACAMALS AAEAI SGQ
Sbjct: 361 ETSIINLPEDREMGKTKECSRMTSNLVNADNGNEDILRVESAEACAMALSQAAEAITSGQ 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           N VSDAVS AGIIILPRPSDANEEAS NG+++  PHS+ E+ NKPG L SDLFDP DSWY
Sbjct: 421 NEVSDAVSEAGIIILPRPSDANEEASTNGENISEPHSSSEKSNKPGILRSDLFDPDDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           D+PPEGFSL+LSSFATMWMAIFAW+TSSSLAYIYGKDE FHEEF YIDGREYP+KI+SAD
Sbjct: 481 DSPPEGFSLTLSSFATMWMAIFAWMTSSSLAYIYGKDEKFHEEFQYIDGREYPRKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMG LL+TMTFLDALPAFR KQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGCLLDTMTFLDALPAFRTKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLFIEALSVCRIPS+ SQ+++SRSLFHKV
Sbjct: 601 VIVLLFIEALSVCRIPSLDSQVSHSRSLFHKV 629

[Close]

BLAST of MS022558 vs. ExPASy Swiss-Prot
Match: F4K1B1 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g26760 PE=2 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 8.0e-117
Identity = 292/729 (40.05%), Postives = 393/729 (53.91%), Query Frame = 0


Query: 1   MAK-NQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPL 60
           MAK N++  I D +HKLQL +LE   ++NQLFAA  LMSRSDYEDVVTER+IA LCGY L
Sbjct: 1   MAKDNEAIAINDAVHKLQLYMLENTTDQNQLFAARKLMSRSDYEDVVTERAIAKLCGYTL 60

Query: 61  CHSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPE 120
           C   L  D +R+G+YRISLKDHKVYDLQET K+CS+ CLI+S+ F+G LQE R    +  
Sbjct: 61  CQRFLPSDVSRRGKYRISLKDHKVYDLQETSKFCSAGCLIDSKTFSGSLQEARTLEFDSV 120

Query: 121 KLKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYV 180
           KL EIL LF + S + K ++  N DL LS L I+E       E+ +E+WMGPSNA+EGYV
Sbjct: 121 KLNEILDLFGD-SLEVKGSLDVNKDLDLSKLMIKENFGVRGEELSLEKWMGPSNAVEGYV 180

Query: 181 PHRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGL 240
           P            D  +S N SKA  +  +  KH   ++ FT T+I  +  SVSK+    
Sbjct: 181 PF-----------DRSKSSNDSKATTQS-NQEKH---EMDFTSTVIMPDVNSVSKLPPQT 240

Query: 241 KEMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANG------K 300
           K+ +  T +++  G+ K   T+L+  +   P K     +    KE+     +G      K
Sbjct: 241 KQAS--TVVESVDGKGK---TVLKEQTVVPPTKKVSRFRREKEKEKKTFGVDGMGCAQEK 300

Query: 301 STT----------------------------------------NLSDAPSTSNQCDTSCN 360
           +T                                         ++S  P  S +   SC 
Sbjct: 301 TTVLPRKILSFCNEIEKDFKNFGFDEMGLASSAMMSDGYGVEYSVSKQPQCSMEDSLSCK 360

Query: 361 L-----------TTEPNGGSSDLSGTQIKPS----------------------------- 420
           L           T   +   S+  G++ KP                              
Sbjct: 361 LKGDLQTLDGKNTLSGSSSGSNTKGSKTKPEKSRKKIISVEYHANSYEDGEEILAAESYE 420

Query: 421 ------------------LKQPGKKNLRRSVTWADEKIDDTSISNLPEVREIGKTKHNSR 480
                             LK  G K L RSVTWAD+   +    +L EVR       N+ 
Sbjct: 421 RHKAQDVCSSSEIVTKSCLKISGSKKLSRSVTWADQ---NDGRGDLCEVR-------NND 480

Query: 481 VTSNLATVDNDNEDI---LRIESAEACAMALSLAAEAINSGQNVVSDAVSNAGIIILPRP 540
             +  +   ND ED+    R+  AEA A ALS AAEA++SG +  SDA + AGII+LP  
Sbjct: 481 NAAGPSLSSNDIEDVNSLSRLALAEALATALSQAAEAVSSGNSDASDATAKAGIILLPST 540

Query: 541 SDANEEASINGDDLPVPHSTP---ERPNKPGTLHSDLFDPKDSWYDAPPEGFSLSLSSFA 600
              +EE +    +  +    P   + PNKPG   SDLFD   SW+D PPEGF+L+LS+FA
Sbjct: 541 HQLDEEVTEEHSEEEMTEEEPTLLKWPNKPGIPDSDLFDRDQSWFDGPPEGFNLTLSNFA 600

Query: 601 TMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEIKQTLAGCLT 619
            MW ++F WV+SSSLAYIYGK+ES HEEFL ++G+EYP++II  DG SSEIKQT+AGCL 
Sbjct: 601 VMWDSLFGWVSSSSLAYIYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEIKQTIAGCLA 660

[Close]

BLAST of MS022558 vs. ExPASy Swiss-Prot
Match: A2Y040 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18345 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.6e-88
Identity = 244/692 (35.26%), Postives = 356/692 (51.45%), Query Frame = 0


Query: 9   IKDTIHKLQLALLEG--IQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLCHSNLSP 68
           +   +H++Q+AL +G     E  L AA SL+S  DY DVVTERSIA+ CGYP C + L  
Sbjct: 18  VASAVHRVQMALYDGAAASREPLLRAAASLLSGPDYADVVTERSIADACGYPACPNPLPS 77

Query: 69  DNTR---KGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEKLKE 128
           ++ R     R+RISL++H+VYDL+E  K+CS  CL+ S AF   L  +R   ++P++L  
Sbjct: 78  EDARGKAAPRFRISLREHRVYDLEEARKFCSERCLVASAAFGASLPPDRPFGVSPDRLDA 137

Query: 129 ILRLFEN-----------LSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPS 188
           ++ LFE            L F +  + G   + G   +EI EK  +  GEV ++EW+GPS
Sbjct: 138 LVALFEGGGGGGGDGGLALGFGASGD-GKEVEEG-RKVEIMEKEAAGTGEVTLQEWIGPS 197

Query: 189 NAIEGYVPHRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSD--------------- 248
           +AIEGYVP RD +    P K+ K+++  S  +   ++      S                
Sbjct: 198 DAIEGYVPRRD-RVVGGPKKEAKQNDACSAEQSSNINVDSRNASSGESGMVLTENTKAKK 257

Query: 249 LSFTRTII------TDEEYSVSKISSGLKEMTFDTKLKAQTGESKEQFTI-LETPSAAAP 308
              T+T +       D +   S IS  + +   D  L+ +  + K +          + P
Sbjct: 258 KEATKTPLKMFKQDEDNDMLSSCISDSIVKQLEDVVLEEKKDKKKNKAAKGTSRVGKSKP 317

Query: 309 VKNSVEQKPRGLKERNKV----------------SANGKSTTNLSDAPSTSNQC------ 368
            K  V +    +   + +                  N  S+   ++ PS+S         
Sbjct: 318 AKRPVGRDGHEVDFTSTIIMGDHGSEMMDHGALGQYNFSSSILANEQPSSSQYAAIDSVQ 377

Query: 369 -------DTSCNLTTEPNGGSSDLSG-TQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN 428
                  +   N        +SD SG   ++ SLK  G KN  RSV WADE         
Sbjct: 378 AYTEELDELFSNAVNIAKDETSDDSGRCTLRSSLKAVGSKNAGRSVKWADEN-------- 437

Query: 429 LPEVREIGKTKHNSRV-TSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSD 488
                  G     SR   S+ +      +  +R ESAEACA AL  AAEAI+SG + V D
Sbjct: 438 -------GSVLETSRAFVSHSSKSQESMDSSVRRESAEACAAALIEAAEAISSGTSEVED 497

Query: 489 AVSNAGIIILP---------RPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPK 548
           AVS AGIIILP            D +++A  N +   +     + P K   L +D+FD  
Sbjct: 498 AVSKAGIIILPDMVNQQQYNNDYDNDKDAGEN-EIFEIDRGVVKWPKKTVLLDTDMFDVD 557

Query: 549 DSWYDAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKI 608
           DSW+D PPEGFSL+LSSFATMW A+F WV+ SSLAY+YG DES  E+ L   GRE P+K 
Sbjct: 558 DSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKR 617

Query: 609 ISADGRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRM 623
           +  DG SSEI++ L  C+  ++P L S L++  P+S LE  +G LL+TM+F+DALP+ R 
Sbjct: 618 VLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRS 677

[Close]

BLAST of MS022558 vs. ExPASy Swiss-Prot
Match: Q6AVZ9 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0134300 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 4.6e-88
Identity = 245/692 (35.40%), Postives = 361/692 (52.17%), Query Frame = 0


Query: 9   IKDTIHKLQLALLEG--IQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLCHSNLSP 68
           +   +H++Q+AL +G     E  L AA SL+S  DY DVVTERSIA+ CGYP C + L  
Sbjct: 18  VASAVHRVQMALYDGAAASREPLLRAAASLLSGPDYADVVTERSIADACGYPACPNPLPS 77

Query: 69  DNTR---KGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEKLKE 128
           ++ R     R+RISL++H+VYDL+E  K+CS  CL+ S AF   L  +R   ++P++L  
Sbjct: 78  EDARGKAAPRFRISLREHRVYDLEEARKFCSERCLVASAAFGASLPPDRPFGVSPDRLDA 137

Query: 129 ILRLFEN-----------LSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPS 188
           ++ LFE            L F +  + G   + G   +EI EK  +  GEV ++EW+GPS
Sbjct: 138 LVALFEGGGGGGDDGGLALGFGASGD-GKEVEEG-RKVEIMEKEAAGTGEVTLQEWIGPS 197

Query: 189 NAIEGYVPHRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSD--------------- 248
           +AIEGYVP RD +    P K+ K+++  S  +   ++      S                
Sbjct: 198 DAIEGYVPRRD-RVVGGPKKEAKQNDACSAEQSSNINVDSRNASSGESGMVLTENTKAKK 257

Query: 249 LSFTRTII------TDEEYSVSKISSGLKEMTFDTKLKAQTGESKEQFT-----ILETPS 308
              T+T +       D +   S IS  + +   D  L+ +  + K +       + ++  
Sbjct: 258 KEATKTPLKMFKQDEDNDMLSSCISDSIVKQLEDVVLEEKKDKKKNKAAKGTSRVGKSKP 317

Query: 309 AAAPV---------KNSVEQKPRGLKERNKVSA---NGKSTTNLSDAPSTSNQC------ 368
           A  PV          +++    RG +  +  +    N  S+   ++ PS+S         
Sbjct: 318 AKRPVGRDGHEVDFTSTIIMGDRGSEMMDHGALGQYNFSSSILANEQPSSSQYAAIDSVQ 377

Query: 369 -------DTSCNLTTEPNGGSSDLSG-TQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN 428
                  +   N        +SD SG   ++ SLK  G KN   SV WADE         
Sbjct: 378 AYTEELDELFSNAVNIAKDETSDDSGRCTLRSSLKAVGSKNAGHSVKWADEN-------- 437

Query: 429 LPEVREIGKTKHNSRV-TSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSD 488
                  G     SR   S+ +      +  +R ESAEACA AL  AAEAI+SG + V D
Sbjct: 438 -------GSVLETSRAFVSHSSKSQESMDSSVRRESAEACAAALIEAAEAISSGTSEVED 497

Query: 489 AVSNAGIIILP---------RPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPK 548
           AVS AGIIILP            D +++A  N +   +     + P K   L +D+FD  
Sbjct: 498 AVSKAGIIILPDMVNQQQYNNDYDNDKDAGEN-EIFEIDRGVVKWPKKTVLLDTDMFDVD 557

Query: 549 DSWYDAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKI 608
           DSW+D PPEGFSL+LSSFATMW A+F WV+ SSLAY+YG DES  E+ L   GRE P+K 
Sbjct: 558 DSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKR 617

Query: 609 ISADGRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRM 623
           +  DG SSEI++ L  C+  ++P L S L++  P+S LE  +G LL+TM+F+DALP+ R 
Sbjct: 618 VLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRS 677

[Close]

BLAST of MS022558 vs. ExPASy Swiss-Prot
Match: F6RRD7 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Bos taurus OX=9913 GN=RPAP2 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-11
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 8   FIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLCHSNLSPD 67
           F +  +H ++  L E I +E  L   G  ++ + Y DVV ERSI  LCGYPLC + L   
Sbjct: 54  FERKALHIVEQLLEENI-SEEFLRECGKFITPAHYSDVVDERSIIKLCGYPLCQNKLG-- 113

Query: 68  NTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEKLKEILRL 127
              K +Y+IS K +KVYD+ E   +CS+ C   S+ F  ++ +    +   E+  +   L
Sbjct: 114 IVPKQKYKISTKTNKVYDITERKCFCSNFCYKASKFFEAQIPKSPVWIREEERHPDFQLL 173

Query: 128 FENLSFDSKENM 140
            +  S  S E +
Sbjct: 174 QDGQSGPSGEEI 182

[Close]

BLAST of MS022558 vs. ExPASy Swiss-Prot
Match: Q5RA37 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Pongo abelii OX=9601 GN=RPAP2 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-08
Identity = 86/331 (25.98%), Postives = 139/331 (41.99%), Query Frame = 0


Query: 8   FIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLCHSNLSPD 67
           F +  +H ++  L E I  E  L   G  ++ + Y DVV ERSI  LCGYPLC   L   
Sbjct: 54  FERKALHIVEQLLEENI-TEEFLMECGKFITPAHYSDVVDERSIVKLCGYPLCQKKLG-- 113

Query: 68  NTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEKLKEILRL 127
              K +Y+IS K +KVYD+ E   +CS+ C   S+ F  ++ +    V   E+  +   L
Sbjct: 114 IVPKQKYKISTKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLL 173

Query: 128 FENLSFDSKENMGNNCDLGL--SDLE----IQEKAESNVGEVPIEEWM-GPSNAIEGYVP 187
            E  S  S E +   C   +  SD++     +++ ES+      +       + +   +P
Sbjct: 174 KEQQSGHSGEEV-QLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILP 233

Query: 188 -HRDHKTKTSP---SKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKIS 247
            +R + T   P    K   + + G KA  K  D  +           I   E+    K+ 
Sbjct: 234 GNRPNSTSIRPQLHQKSIMKKKAGHKANSKHKDKEQ---------TVIDVTEQLGDCKLD 293

Query: 248 SGLKEMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTT 307
           S  K+ T +  L+    +S    T+ E   A+   +NS  +  R   E   V  + KS  
Sbjct: 294 SQEKDATCELPLQKVNTQSSSNSTLPERLKAS---ENSESEYSR--SEITLVGISKKSAE 353

Query: 308 NLSDAPSTSNQCDTSCNLTTE--PNGGSSDL 326
           +     + SNQ   S + + +  P  G  +L
Sbjct: 354 HFKRKFAKSNQVSRSVSSSVQVCPEVGKRNL 366

[Close]

BLAST of MS022558 vs. ExPASy TrEMBL
Match: A0A6J1CWB1 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Momordica charantia OX=3673 GN=LOC111015168 PE=3 SV=1)

HSP 1 Score: 1216.4 bits (3146), Expect = 0.0e+00
Identity = 624/626 (99.68%), Postives = 626/626 (100.00%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSI+NLCGYPLC
Sbjct: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSISNLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
           HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK
Sbjct: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HRDHKTKTSPSKDGKESENGSKAKIKPLDGGK+FFSDLSFTRTIITDEEYSVSKISSGLK
Sbjct: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKNFFSDLSFTRTIITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSD 300
           EMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSD
Sbjct: 241 EMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKSTTNLSD 300

Query: 301 APSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN 360
           APSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN
Sbjct: 301 APSTSNQCDTSCNLTTEPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKIDDTSISN 360

Query: 361 LPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDA 420
           LPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDA
Sbjct: 361 LPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQNVVSDA 420

Query: 421 VSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEG 480
           VSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEG
Sbjct: 421 VSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWYDAPPEG 480

Query: 481 FSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEI 540
           FSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEI
Sbjct: 481 FSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEI 540

Query: 541 KQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLF 600
           KQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLF
Sbjct: 541 KQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQVIVLLF 600

Query: 601 IEALSVCRIPSVASQMTNSRSLFHKV 627
           IEALSVCRIPSVASQMTNSRSLFHKV
Sbjct: 601 IEALSVCRIPSVASQMTNSRSLFHKV 626

[Close]

BLAST of MS022558 vs. ExPASy TrEMBL
Match: A0A6J1GWL9 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111457827 PE=3 SV=1)

HSP 1 Score: 982.6 bits (2539), Expect = 7.4e-283
Identity = 513/632 (81.17%), Postives = 554/632 (87.66%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQ+  IKDT++KLQLALL+GI NENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQTILIKDTVYKLQLALLDGIHNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
            SNL  DNTRKGRYRISLK+HKVYDL+ETYKYCSSTCLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  QSNLPSDNTRKGRYRISLKEHKVYDLEETYKYCSSTCLINSRAFSGRLQDERCSVMNPGK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLS DSKEN  N+CDLG   LEIQEK ES++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSLDSKENTRNSCDLG---LEIQEKIESSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HR+H   TSP KDGKE ++GSKAKIK L  GK FFSD SF  T+ITDEEYSVSKISSGLK
Sbjct: 181 HRNHNIMTSPRKDGKELKDGSKAKIKQLGVGKDFFSDFSFATTVITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGE-----SKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EMTFDTK KAQTGE     S EQFTILETP   AP KNSV +K RG KER  VSA  +S 
Sbjct: 241 EMTFDTKSKAQTGEFCGKQSNEQFTILETPHGPAPTKNSVGRKARGSKERTNVSATAESN 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSN C T+CN+TT EPNGGS+DL+ TQIK SLKQPGKKNLRRSVTWAD K D
Sbjct: 301 NNLSDAPSTSNHCSTNCNITTEEPNGGSNDLNETQIKSSLKQPGKKNLRRSVTWADAKTD 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           +TSI NLPE RE+GKTK  SR+TSNL   DN NEDILR+ESAEACAMALS AAEAI SG+
Sbjct: 361 ETSIINLPEDREMGKTKECSRMTSNLVNADNGNEDILRVESAEACAMALSQAAEAITSGK 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           N VSDAVS AGIIILPRPSDANEEAS NG+++  PHS+ E+ NKPG L SDLFDP DSWY
Sbjct: 421 NEVSDAVSEAGIIILPRPSDANEEASTNGENISEPHSSSEKSNKPGILRSDLFDPNDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           D+PPEGFSL+LSSFATMWMAIFAW+TSSSLAYIYGKDE FHEEF YIDGREYP+KI+SAD
Sbjct: 481 DSPPEGFSLTLSSFATMWMAIFAWMTSSSLAYIYGKDEKFHEEFQYIDGREYPRKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMG LL+TMTFLDALPAFR KQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGCLLDTMTFLDALPAFRTKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLFIEALSVCRIPS+ SQ+++SRSLFHKV
Sbjct: 601 VIVLLFIEALSVCRIPSLDSQVSHSRSLFHKV 629

[Close]

BLAST of MS022558 vs. ExPASy TrEMBL
Match: A0A6J1IY57 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479539 PE=3 SV=1)

HSP 1 Score: 978.0 bits (2527), Expect = 1.8e-281
Identity = 510/632 (80.70%), Postives = 554/632 (87.66%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQ+  IKDT++KLQLALL+GI NENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQTILIKDTVYKLQLALLDGIHNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
            SNL  DNTRKGRYRISLK+HKVYDL+ETYKYCSSTCLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  QSNLPSDNTRKGRYRISLKEHKVYDLEETYKYCSSTCLINSRAFSGRLQDERCSVMNPGK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEILRLFENLS DSKEN  N+CDLG   LEIQEK ES++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILRLFENLSLDSKENTRNSCDLG---LEIQEKIESSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HR+H   T PSKDGKE ++GSKAKIK L   K FFSD SF  T+ITDEEYSVSKISSGLK
Sbjct: 181 HRNHNIMTLPSKDGKELKDGSKAKIKQLGVEKDFFSDFSFASTVITDEEYSVSKISSGLK 240

Query: 241 EMTFDTKLKAQTGE-----SKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EMTFDTK KAQTGE     S EQFTILETP   AP KNSV +K RG KER  VSA  +S 
Sbjct: 241 EMTFDTKSKAQTGEFCGKQSNEQFTILETPHGPAPTKNSVGRKARGTKERTNVSATAESN 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSD+PSTSN C+T+CN+TT EP GGS++L+ TQIK SLKQPGKKNLRRSVTWAD K D
Sbjct: 301 NNLSDSPSTSNHCNTNCNITTEEPKGGSNELNETQIKSSLKQPGKKNLRRSVTWADAKTD 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           +TSI NLPE RE+GKTK  SR+TSNL   DN NED+LR+ESAEACAMALS AAEAI SGQ
Sbjct: 361 ETSIINLPEDREMGKTKECSRMTSNLVNADNGNEDMLRVESAEACAMALSQAAEAITSGQ 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           N VSDAVS AGIIILPRPSDANEE S NG ++  P+S+ E+ NKPG LHSDLFDP+DSWY
Sbjct: 421 NEVSDAVSEAGIIILPRPSDANEEVSTNGKNISEPYSSSEKSNKPGILHSDLFDPEDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           D+PPEGFSL+LSSFATMWMAIFAW+TSSSLAYIYGKDE FHEEF YIDGREYP+KI+SAD
Sbjct: 481 DSPPEGFSLTLSSFATMWMAIFAWMTSSSLAYIYGKDEKFHEEFQYIDGREYPRKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMG LL+TMTFLDALPAFRMKQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGCLLDTMTFLDALPAFRMKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLFIEALSVCRIPS+ SQ++NSRSLFHKV
Sbjct: 601 VIVLLFIEALSVCRIPSLDSQVSNSRSLFHKV 629

[Close]

BLAST of MS022558 vs. ExPASy TrEMBL
Match: A0A1S3BXZ9 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo OX=3656 GN=LOC103494620 PE=3 SV=1)

HSP 1 Score: 955.3 bits (2468), Expect = 1.3e-274
Identity = 504/632 (79.75%), Postives = 543/632 (85.92%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQS  IKDT++KLQLAL EGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQSALIKDTVYKLQLALYEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
           HSNL  DNTR+GRYRISLK+HKVYDL+ETYKYCSS CLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  HSNLPSDNTRRGRYRISLKEHKVYDLEETYKYCSSACLINSRAFSGRLQDERCSVMNPAK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEIL+LFEN+S DSKENMGNNCD G   LEIQEK ES++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILKLFENMSLDSKENMGNNCDSG---LEIQEKIESSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HRDHK  T PSKDGKES++GS AKIKPL GGK FFSD SFT TIITDEEYSVSKISS LK
Sbjct: 181 HRDHKIMTLPSKDGKESKDGSTAKIKPLGGGKDFFSDFSFTSTIITDEEYSVSKISSSLK 240

Query: 241 EMTFDTKLKAQTG-----ESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EM  DT  K QTG     ES +QFTILET  A AP KNSV  K RG KER KVSA  +ST
Sbjct: 241 EMALDTNSKIQTGEFCGKESNDQFTILETSHARAPPKNSVGHKARGSKERTKVSATEEST 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSN   T+ NL T EP GG +DL GT+IK SLKQPGKKNLRRSVTWADEKID
Sbjct: 301 NNLSDAPSTSNNRSTNFNLVTEEPKGGFNDLRGTEIKSSLKQPGKKNLRRSVTWADEKID 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           DTS+ NLPEV E GKTK  SR+TSNL   DNDNED++R+ESAEACAMALS AAEAI SGQ
Sbjct: 361 DTSM-NLPEVGEKGKTKECSRITSNLVNFDNDNEDLIRVESAEACAMALSQAAEAITSGQ 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           + VS+AVS AGIIILP PSDANEEAS        PHS  E+ NK G LHSDLFDP DSWY
Sbjct: 421 SEVSEAVSEAGIIILPHPSDANEEASTEPVKASEPHSFSEKSNKLGVLHSDLFDPSDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           DAPPEGFSL+LSSFATMWMAIFAWVTSSSLAYIYGKD+ FHEEF YIDG+EYP KI+SAD
Sbjct: 481 DAPPEGFSLTLSSFATMWMAIFAWVTSSSLAYIYGKDDKFHEEFQYIDGKEYPSKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTR+IPGLASELKLSTPIS LE+GM  LL+TMTFLDALPAFRMKQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRAIPGLASELKLSTPISRLEYGMAHLLDTMTFLDALPAFRMKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLF+EALSVCRIPS+AS M++SR+L+HKV
Sbjct: 601 VIVLLFMEALSVCRIPSLASHMSSSRNLYHKV 628

[Close]

BLAST of MS022558 vs. ExPASy TrEMBL
Match: A0A5D3E2V9 (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002570 PE=3 SV=1)

HSP 1 Score: 955.3 bits (2468), Expect = 1.3e-274
Identity = 504/632 (79.75%), Postives = 543/632 (85.92%), Query Frame = 0


Query: 1   MAKNQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60
           MAKNQS  IKDT++KLQLAL EGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC
Sbjct: 1   MAKNQSALIKDTVYKLQLALYEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPLC 60

Query: 61  HSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPEK 120
           HSNL  DNTR+GRYRISLK+HKVYDL+ETYKYCSS CLINSRAF+GRLQ+ERCSVMNP K
Sbjct: 61  HSNLPSDNTRRGRYRISLKEHKVYDLEETYKYCSSACLINSRAFSGRLQDERCSVMNPAK 120

Query: 121 LKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYVP 180
           LKEIL+LFEN+S DSKENMGNNCD G   LEIQEK ES++GEVPIEEWMGPSNAIEGYVP
Sbjct: 121 LKEILKLFENMSLDSKENMGNNCDSG---LEIQEKIESSIGEVPIEEWMGPSNAIEGYVP 180

Query: 181 HRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGLK 240
           HRDHK  T PSKDGKES++GS AKIKPL GGK FFSD SFT TIITDEEYSVSKISS LK
Sbjct: 181 HRDHKIMTLPSKDGKESKDGSTAKIKPLGGGKDFFSDFSFTSTIITDEEYSVSKISSSLK 240

Query: 241 EMTFDTKLKAQTG-----ESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANGKST 300
           EM  DT  K QTG     ES +QFTILET  A AP KNSV  K RG KER KVSA  +ST
Sbjct: 241 EMALDTNSKIQTGEFCGKESNDQFTILETSHARAPPKNSVGHKARGSKERTKVSATEEST 300

Query: 301 TNLSDAPSTSNQCDTSCNLTT-EPNGGSSDLSGTQIKPSLKQPGKKNLRRSVTWADEKID 360
            NLSDAPSTSN   T+ NL T EP GG +DL GT+IK SLKQPGKKNLRRSVTWADEKID
Sbjct: 301 NNLSDAPSTSNNRSTNFNLVTEEPKGGFNDLRGTEIKSSLKQPGKKNLRRSVTWADEKID 360

Query: 361 DTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDILRIESAEACAMALSLAAEAINSGQ 420
           DTS+ NLPEV E GKTK  SR+TSNL   DNDNED++R+ESAEACAMALS AAEAI SGQ
Sbjct: 361 DTSM-NLPEVGEKGKTKECSRITSNLVNFDNDNEDLIRVESAEACAMALSQAAEAITSGQ 420

Query: 421 NVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTPERPNKPGTLHSDLFDPKDSWY 480
           + VS+AVS AGIIILP PSDANEEAS        PHS  E+ NK G LHSDLFDP DSWY
Sbjct: 421 SEVSEAVSEAGIIILPHPSDANEEASTEPVKASEPHSFSEKSNKLGVLHSDLFDPSDSWY 480

Query: 481 DAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISAD 540
           DAPPEGFSL+LSSFATMWMAIFAWVTSSSLAYIYGKD+ FHEEF YIDG+EYP KI+SAD
Sbjct: 481 DAPPEGFSLTLSSFATMWMAIFAWVTSSSLAYIYGKDDKFHEEFQYIDGKEYPSKIVSAD 540

Query: 541 GRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLETMTFLDALPAFRMKQWQ 600
           GRSSEIKQTLAGCLTR+IPGLASELKLSTPIS LE+GM  LL+TMTFLDALPAFRMKQWQ
Sbjct: 541 GRSSEIKQTLAGCLTRAIPGLASELKLSTPISRLEYGMAHLLDTMTFLDALPAFRMKQWQ 600

Query: 601 VIVLLFIEALSVCRIPSVASQMTNSRSLFHKV 627
           VIVLLF+EALSVCRIPS+AS M++SR+L+HKV
Sbjct: 601 VIVLLFMEALSVCRIPSLASHMSSSRNLYHKV 628

[Close]

BLAST of MS022558 vs. TAIR 10
Match: AT5G26760.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 422.5 bits (1085), Expect = 5.7e-118
Identity = 292/729 (40.05%), Postives = 393/729 (53.91%), Query Frame = 0


Query: 1   MAK-NQSFFIKDTIHKLQLALLEGIQNENQLFAAGSLMSRSDYEDVVTERSIANLCGYPL 60
           MAK N++  I D +HKLQL +LE   ++NQLFAA  LMSRSDYEDVVTER+IA LCGY L
Sbjct: 1   MAKDNEAIAINDAVHKLQLYMLENTTDQNQLFAARKLMSRSDYEDVVTERAIAKLCGYTL 60

Query: 61  CHSNLSPDNTRKGRYRISLKDHKVYDLQETYKYCSSTCLINSRAFAGRLQEERCSVMNPE 120
           C   L  D +R+G+YRISLKDHKVYDLQET K+CS+ CLI+S+ F+G LQE R    +  
Sbjct: 61  CQRFLPSDVSRRGKYRISLKDHKVYDLQETSKFCSAGCLIDSKTFSGSLQEARTLEFDSV 120

Query: 121 KLKEILRLFENLSFDSKENMGNNCDLGLSDLEIQEKAESNVGEVPIEEWMGPSNAIEGYV 180
           KL EIL LF + S + K ++  N DL LS L I+E       E+ +E+WMGPSNA+EGYV
Sbjct: 121 KLNEILDLFGD-SLEVKGSLDVNKDLDLSKLMIKENFGVRGEELSLEKWMGPSNAVEGYV 180

Query: 181 PHRDHKTKTSPSKDGKESENGSKAKIKPLDGGKHFFSDLSFTRTIITDEEYSVSKISSGL 240
           P            D  +S N SKA  +  +  KH   ++ FT T+I  +  SVSK+    
Sbjct: 181 PF-----------DRSKSSNDSKATTQS-NQEKH---EMDFTSTVIMPDVNSVSKLPPQT 240

Query: 241 KEMTFDTKLKAQTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERNKVSANG------K 300
           K+ +  T +++  G+ K   T+L+  +   P K     +    KE+     +G      K
Sbjct: 241 KQAS--TVVESVDGKGK---TVLKEQTVVPPTKKVSRFRREKEKEKKTFGVDGMGCAQEK 300

Query: 301 STT----------------------------------------NLSDAPSTSNQCDTSCN 360
           +T                                         ++S  P  S +   SC 
Sbjct: 301 TTVLPRKILSFCNEIEKDFKNFGFDEMGLASSAMMSDGYGVEYSVSKQPQCSMEDSLSCK 360

Query: 361 L-----------TTEPNGGSSDLSGTQIKPS----------------------------- 420
           L           T   +   S+  G++ KP                              
Sbjct: 361 LKGDLQTLDGKNTLSGSSSGSNTKGSKTKPEKSRKKIISVEYHANSYEDGEEILAAESYE 420

Query: 421 ------------------LKQPGKKNLRRSVTWADEKIDDTSISNLPEVREIGKTKHNSR 480
                             LK  G K L RSVTWAD+   +    +L EVR       N+ 
Sbjct: 421 RHKAQDVCSSSEIVTKSCLKISGSKKLSRSVTWADQ---NDGRGDLCEVR-------NND 480

Query: 481 VTSNLATVDNDNEDI---LRIESAEACAMALSLAAEAINSGQNVVSDAVSNAGIIILPRP 540
             +  +   ND ED+    R+  AEA A ALS AAEA++SG +  SDA + AGII+LP  
Sbjct: 481 NAAGPSLSSNDIEDVNSLSRLALAEALATALSQAAEAVSSGNSDASDATAKAGIILLPST 540

Query: 541 SDANEEASINGDDLPVPHSTP---ERPNKPGTLHSDLFDPKDSWYDAPPEGFSLSLSSFA 600
              +EE +    +  +    P   + PNKPG   SDLFD   SW+D PPEGF+L+LS+FA
Sbjct: 541 HQLDEEVTEEHSEEEMTEEEPTLLKWPNKPGIPDSDLFDRDQSWFDGPPEGFNLTLSNFA 600

Query: 601 TMWMAIFAWVTSSSLAYIYGKDESFHEEFLYIDGREYPKKIISADGRSSEIKQTLAGCLT 619
            MW ++F WV+SSSLAYIYGK+ES HEEFL ++G+EYP++II  DG SSEIKQT+AGCL 
Sbjct: 601 VMWDSLFGWVSSSSLAYIYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEIKQTIAGCLA 660

[Close]

BLAST of MS022558 vs. TAIR 10
Match: AT5G26760.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 255.0 bits (650), Expect = 1.6e-67
Identity = 172/400 (43.00%), Postives = 234/400 (58.50%), Query Frame = 0


Query: 229 EYSVSKISSGLKEMTFDTKLKA--QTGESKEQFTILETPSAAAPVKNSVEQKPRGLKERN 288
           EYSVSK      E +   KLK   QT + K       T S ++   N+   K +  K R 
Sbjct: 16  EYSVSKQPQCSMEDSLSCKLKGDLQTLDGK------NTLSGSSSGSNTKGSKTKPEKSRK 75

Query: 289 KVSANGKSTTNLSDAPSTSNQCDTSCNLTTEPNGGSSDLSGTQI--KPSLKQPGKKNLRR 348
           K+ +      +  D        +     + E +      S ++I  K  LK  G K L R
Sbjct: 76  KIISVEYHANSYEDGE------EILAAESYERHKAQDVCSSSEIVTKSCLKISGSKKLSR 135

Query: 349 SVTWADEKIDDTSISNLPEVREIGKTKHNSRVTSNLATVDNDNEDI---LRIESAEACAM 408
           SVTWAD+   +    +L EVR       N+   +  +   ND ED+    R+  AEA A 
Sbjct: 136 SVTWADQ---NDGRGDLCEVR-------NNDNAAGPSLSSNDIEDVNSLSRLALAEALAT 195

Query: 409 ALSLAAEAINSGQNVVSDAVSNAGIIILPRPSDANEEASINGDDLPVPHSTP---ERPNK 468
           ALS AAEA++SG +  SDA + AGII+LP     +EE +    +  +    P   + PNK
Sbjct: 196 ALSQAAEAVSSGNSDASDATAKAGIILLPSTHQLDEEVTEEHSEEEMTEEEPTLLKWPNK 255

Query: 469 PGTLHSDLFDPKDSWYDAPPEGFSLSLSSFATMWMAIFAWVTSSSLAYIYGKDESFHEEF 528
           PG   SDLFD   SW+D PPEGF+L+LS+FA MW ++F WV+SSSLAYIYGK+ES HEEF
Sbjct: 256 PGIPDSDLFDRDQSWFDGPPEGFNLTLSNFAVMWDSLFGWVSSSSLAYIYGKEESAHEEF 315

Query: 529 LYIDGREYPKKIISADGRSSEIKQTLAGCLTRSIPGLASELKLSTPISSLEHGMGQLLET 588
           L ++G+EYP++II  DG SSEIKQT+AGCL R++P + + L+L   IS LE G+G LLET
Sbjct: 316 LLVNGKEYPRRIIMVDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLET 375

Query: 589 MTFLDALPAFRMKQWQVIVLLFIEALSVCRIPSVASQMTN 619
           M+   A+P+FR+K+W VIVLLF++ALSV RIP +A  ++N
Sbjct: 376 MSLTGAVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISN 393

The following BLAST results are available for this feature:

BLAST of MS022558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145788.1	0.0e+00	99.68	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Momordica c...	[more]
XP_038893419.1	2.2e-289	82.91	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Benincasa h...	[more]
XP_022955995.1	1.5e-282	81.17	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1 [...	[more]
KAG6581990.1	5.8e-282	81.17	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein, partia...	[more]
XP_023528028.1	1.7e-281	81.01	putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1 [...	[more]

BLAST of MS022558 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K1B1	8.0e-117	40.05	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidops...	[more]
A2Y040	4.6e-88	35.26	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sat...	[more]
Q6AVZ9	4.6e-88	35.40	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sat...	[more]
F6RRD7	5.9e-11	33.33	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Bos taurus OX=991...	[more]
Q5RA37	8.0e-08	25.98	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Pongo abelii OX=9...	[more]

BLAST of MS022558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWB1	0.0e+00	99.68	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Momordica charanti...	[more]
A0A6J1GWL9	7.4e-283	81.17	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucurbita moschata...	[more]
A0A6J1IY57	1.8e-281	80.70	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucurbita maxima O...	[more]
A0A1S3BXZ9	1.3e-274	79.75	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo OX=36...	[more]
A0A5D3E2V9	1.3e-274	79.75	RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Cucumis melo var. ...	[more]

BLAST of MS022558 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26760.2	5.7e-118	40.05	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 ...	[more]
AT5G26760.1	1.6e-67	43.00	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007308	Rtr1/RPAP2 domain	PFAM	PF04181	RPAP2_Rtr1	coord: 36..108 e-value: 5.8E-22 score: 77.8
IPR007308	Rtr1/RPAP2 domain	PROSITE	PS51479	ZF_RTR1	coord: 32..117 score: 19.774492
IPR038534	Rtr1/RPAP2 domain superfamily	GENE3D	1.25.40.820		coord: 3..144 e-value: 1.1E-29 score: 105.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..335
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 436..463
IPR039693	Rtr1/RPAP2	PANTHER	PTHR14732	UNCHARACTERIZED	coord: 9..626

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022558.1	MS022558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
molecular_function	GO:0043175	RNA polymerase core enzyme binding
molecular_function	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity