MS022520 (gene) Bitter gourd (TR) v1

Overview


Name	MS022520
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	root hair specific 4
Location	scaffold720: 257614 .. 258093 (-)
RNA-Seq Expression	MS022520
Synteny	MS022520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGAGAAATTGAGATGTGGGGCAGGGGCACTATGGTTGTTGGTAGCAGTACTGCCGGGGTTTAGGAAGGGGAAGGGTGAGAGAGAGGAAGAGGGAGATGGAGGTGATGAGGGAAGCGGGTGCATATCCATATCCATATCATCGAGGAGAGTTTCTCTGGAAAAATTCGAATGCGGTTCATGGGCTTCGTCGGGCATGGTGGTTCATGAGGACAATGAGGAAAGTGGGAGCCTCTATTTTGATCTGCCAATAGAGTTGATAAGGAACAGCGTCAGCGTCAGCGTGGGCGCACAATCACCAGTAAAAGCCGCTTTTGTATTCGACAAAGCAAAATTAGCTGCCGCCGCCGCCGCCTCGTCAGTATCAGTACGTGCATCTGCCCCGCCCACACCAACTTCATCTTCAATCGTCATTACCCCACGCTTGCGCAAAGCTAGGGAAGAGTTCAATGCACTTCTGGAAGCGCATACTACTACTCTC

mRNA sequence

GGTGAGAAATTGAGATGTGGGGCAGGGGCACTATGGTTGTTGGTAGCAGTACTGCCGGGGTTTAGGAAGGGGAAGGGTGAGAGAGAGGAAGAGGGAGATGGAGGTGATGAGGGAAGCGGGTGCATATCCATATCCATATCATCGAGGAGAGTTTCTCTGGAAAAATTCGAATGCGGTTCATGGGCTTCGTCGGGCATGGTGGTTCATGAGGACAATGAGGAAAGTGGGAGCCTCTATTTTGATCTGCCAATAGAGTTGATAAGGAACAGCGTCAGCGTCAGCGTGGGCGCACAATCACCAGTAAAAGCCGCTTTTGTATTCGACAAAGCAAAATTAGCTGCCGCCGCCGCCGCCTCGTCAGTATCAGTACGTGCATCTGCCCCGCCCACACCAACTTCATCTTCAATCGTCATTACCCCACGCTTGCGCAAAGCTAGGGAAGAGTTCAATGCACTTCTGGAAGCGCATACTACTACTCTC

Coding sequence (CDS)

GGTGAGAAATTGAGATGTGGGGCAGGGGCACTATGGTTGTTGGTAGCAGTACTGCCGGGGTTTAGGAAGGGGAAGGGTGAGAGAGAGGAAGAGGGAGATGGAGGTGATGAGGGAAGCGGGTGCATATCCATATCCATATCATCGAGGAGAGTTTCTCTGGAAAAATTCGAATGCGGTTCATGGGCTTCGTCGGGCATGGTGGTTCATGAGGACAATGAGGAAAGTGGGAGCCTCTATTTTGATCTGCCAATAGAGTTGATAAGGAACAGCGTCAGCGTCAGCGTGGGCGCACAATCACCAGTAAAAGCCGCTTTTGTATTCGACAAAGCAAAATTAGCTGCCGCCGCCGCCGCCTCGTCAGTATCAGTACGTGCATCTGCCCCGCCCACACCAACTTCATCTTCAATCGTCATTACCCCACGCTTGCGCAAAGCTAGGGAAGAGTTCAATGCACTTCTGGAAGCGCATACTACTACTCTC

Protein sequence

GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL

Homology

[Close]

BLAST of MS022520 vs. NCBI nr
Match: XP_022146694.1 (uncharacterized protein LOC111015837 [Momordica charantia])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGS 60
           GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGS
Sbjct: 42  GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGS 101

Query: 61  WASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASS 120
           WASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASS
Sbjct: 102 WASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASS 161

Query: 121 VSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 161
           VSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL
Sbjct: 162 VSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 201

[Close]

BLAST of MS022520 vs. NCBI nr
Match: XP_011658372.1 (uncharacterized protein LOC105435976 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-32
Identity = 102/169 (60.36%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGFRKGKGE---REEEGDGGDEGSGCISISISSRRVSLEKFE 60
           G + RC  GAL LL+ VL GF+ GKG    +EE+ +  +EG  CISISI SRRVSLEKFE
Sbjct: 95  GRRFRC-CGALCLLLPVL-GFKVGKGRMKGKEEKREEAEEGE-CISISI-SRRVSLEKFE 154

Query: 61  CGSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVF------DKAK 120
           CGSWASSGMVVHED  ESGSLYFDLP+ELIRNSVS     QSPV AAFVF      +K K
Sbjct: 155 CGSWASSGMVVHEDG-ESGSLYFDLPMELIRNSVSAQ--TQSPVGAAFVFNGRGVWNKPK 214

Query: 121 LAAAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 161
           LA  + A              +S  +ITPRLRKAR+EFNALLEAHT  L
Sbjct: 215 LAEESGA--------------ASPCIITPRLRKARQEFNALLEAHTHVL 242

[Close]

BLAST of MS022520 vs. NCBI nr
Match: XP_022978627.1 (uncharacterized protein LOC111478548 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-32
Identity = 94/163 (57.67%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGF----RKGKGEREEEGDGGDEGSGCISISISSRRVSLEKF 60
           G+  R   GAL LL+ +L G      KGK ER+EE + G+EG GCISISIS  RVSLEKF
Sbjct: 105 GKARRFRCGALCLLLPLLGGLGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKF 164

Query: 61  ECGSWASSGMVVHEDNEE---SGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLA 120
           ECGSWASSGMV HED E     GSLYFDLP+ELIRNSV      QSP +AAFVFD+  + 
Sbjct: 165 ECGSWASSGMVAHEDGESMTGMGSLYFDLPMELIRNSVGAR--TQSPAQAAFVFDRDGVG 224

Query: 121 AAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAH 157
                     +  A  +  +S  VITPRLR+AREEFNALLEAH
Sbjct: 225 VHHLPVWTKAKL-AEESGAASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of MS022520 vs. NCBI nr
Match: XP_023543164.1 (uncharacterized protein LOC111803119 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 5.7e-32
Identity = 94/163 (57.67%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGF----RKGKGEREEEGDGGDEGSGCISISISSRRVSLEKF 60
           G+  R   GAL LL+ VL G      KGK ER+EE + G+EG GCISISIS  RVSLEKF
Sbjct: 105 GKARRFRCGALCLLLPVLGGLGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKF 164

Query: 61  ECGSWASSGMVVHEDNEE---SGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLA 120
           ECGSWASSGMV HED E     GSLYFDLP+ELIRNSV      QSP + AFVFD+  + 
Sbjct: 165 ECGSWASSGMVAHEDGESMSGMGSLYFDLPMELIRNSVGAR--TQSPAQTAFVFDRDGVG 224

Query: 121 AAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAH 157
                     +  A  +  +S  VITPRLR+AREEFNALLEAH
Sbjct: 225 VHHLPVWTKAKL-AEESGAASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of MS022520 vs. NCBI nr
Match: KAA0052411.1 (ycf3-interacting protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 7.5e-32
Identity = 101/169 (59.76%), Postives = 116/169 (68.64%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGFRKGKGE---REEEGDGGDEGSGCISISISSRRVSLEKFE 60
           G + +C  GAL LL+ VL GF+ GKG    +EE+ +  +EG  CISISI SRRVSLEKFE
Sbjct: 336 GRRFKC--GALCLLLPVL-GFKVGKGRMKGKEEKKEEAEEGE-CISISI-SRRVSLEKFE 395

Query: 61  CGSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFD------KAK 120
           CGSWASSGMVVHE+  ESGSLYFDLP+ELIRNSVS    +QSPV AAFVFD      K K
Sbjct: 396 CGSWASSGMVVHEEG-ESGSLYFDLPMELIRNSVSAQ--SQSPVGAAFVFDGKGVRNKPK 455

Query: 121 LAAAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 161
           LA  + A              +S  +ITPRLRKAR+EFNALLEAHT  L
Sbjct: 456 LAEESGA--------------ASPCIITPRLRKARQEFNALLEAHTIIL 482

[Close]

BLAST of MS022520 vs. ExPASy TrEMBL
Match: A0A6J1CYT9 (uncharacterized protein LOC111015837 OS=Momordica charantia OX=3673 GN=LOC111015837 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.1e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGS 60
           GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGS
Sbjct: 42  GEKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDEGSGCISISISSRRVSLEKFECGS 101

Query: 61  WASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASS 120
           WASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASS
Sbjct: 102 WASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLAAAAAASS 161

Query: 121 VSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 161
           VSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL
Sbjct: 162 VSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 201

[Close]

BLAST of MS022520 vs. ExPASy TrEMBL
Match: A0A6J1ILL2 (uncharacterized protein LOC111478548 OS=Cucurbita maxima OX=3661 GN=LOC111478548 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 94/163 (57.67%), Postives = 108/163 (66.26%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGF----RKGKGEREEEGDGGDEGSGCISISISSRRVSLEKF 60
           G+  R   GAL LL+ +L G      KGK ER+EE + G+EG GCISISIS  RVSLEKF
Sbjct: 105 GKARRFRCGALCLLLPLLGGLGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKF 164

Query: 61  ECGSWASSGMVVHEDNEE---SGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLA 120
           ECGSWASSGMV HED E     GSLYFDLP+ELIRNSV      QSP +AAFVFD+  + 
Sbjct: 165 ECGSWASSGMVAHEDGESMTGMGSLYFDLPMELIRNSVGAR--TQSPAQAAFVFDRDGVG 224

Query: 121 AAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAH 157
                     +  A  +  +S  VITPRLR+AREEFNALLEAH
Sbjct: 225 VHHLPVWTKAKL-AEESGAASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of MS022520 vs. ExPASy TrEMBL
Match: A0A0A0KME4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538760 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 102/169 (60.36%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGFRKGKGE---REEEGDGGDEGSGCISISISSRRVSLEKFE 60
           G + RC  GAL LL+ VL GF+ GKG    +EE+ +  +EG  CISISI SRRVSLEKFE
Sbjct: 95  GRRFRC-CGALCLLLPVL-GFKVGKGRMKGKEEKREEAEEGE-CISISI-SRRVSLEKFE 154

Query: 61  CGSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVF------DKAK 120
           CGSWASSGMVVHED  ESGSLYFDLP+ELIRNSVS     QSPV AAFVF      +K K
Sbjct: 155 CGSWASSGMVVHEDG-ESGSLYFDLPMELIRNSVSAQ--TQSPVGAAFVFNGRGVWNKPK 214

Query: 121 LAAAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 161
           LA  + A              +S  +ITPRLRKAR+EFNALLEAHT  L
Sbjct: 215 LAEESGA--------------ASPCIITPRLRKARQEFNALLEAHTHVL 242

[Close]

BLAST of MS022520 vs. ExPASy TrEMBL
Match: A0A5A7UFW0 (Ycf3-interacting protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00060 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.6e-32
Identity = 101/169 (59.76%), Postives = 116/169 (68.64%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGFRKGKGE---REEEGDGGDEGSGCISISISSRRVSLEKFE 60
           G + +C  GAL LL+ VL GF+ GKG    +EE+ +  +EG  CISISI SRRVSLEKFE
Sbjct: 336 GRRFKC--GALCLLLPVL-GFKVGKGRMKGKEEKKEEAEEGE-CISISI-SRRVSLEKFE 395

Query: 61  CGSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFD------KAK 120
           CGSWASSGMVVHE+  ESGSLYFDLP+ELIRNSVS    +QSPV AAFVFD      K K
Sbjct: 396 CGSWASSGMVVHEEG-ESGSLYFDLPMELIRNSVSAQ--SQSPVGAAFVFDGKGVRNKPK 455

Query: 121 LAAAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAHTTTL 161
           LA  + A              +S  +ITPRLRKAR+EFNALLEAHT  L
Sbjct: 456 LAEESGA--------------ASPCIITPRLRKARQEFNALLEAHTIIL 482

[Close]

BLAST of MS022520 vs. ExPASy TrEMBL
Match: A0A6J1EGQ7 (uncharacterized protein LOC111433224 OS=Cucurbita moschata OX=3662 GN=LOC111433224 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 93/163 (57.06%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   GEKLRCGAGALWLLVAVLPGF----RKGKGEREEEGDGGDEGSGCISISISSRRVSLEKF 60
           G+  R   GAL LL+ VL G      KGK ER+EE + G+EG GCISISIS  RVSLEKF
Sbjct: 105 GKARRFRCGALCLLLPVLGGLGFKVGKGKEERKEEVEEGEEGGGCISISISHSRVSLEKF 164

Query: 61  ECGSWASSGMVVHEDNEE---SGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDKAKLA 120
           ECGSWASSGMV HED E     GSLYFDLP+ELIRNSV      QSP + AFVF++  + 
Sbjct: 165 ECGSWASSGMVAHEDGESMSGMGSLYFDLPMELIRNSVGAR--TQSPAQTAFVFNRDGVG 224

Query: 121 AAAAASSVSVRASAPPTPTSSSIVITPRLRKAREEFNALLEAH 157
                     +  A  +  +S  VITPRLR+AREEFNALLEAH
Sbjct: 225 VHHLPVWTKAKL-AEESGAASPCVITPRLRRAREEFNALLEAH 264

[Close]

BLAST of MS022520 vs. TAIR 10
Match: AT4G20190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-13
Identity = 64/174 (36.78%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 14  LVAVLPGFRKGKGER-EEEGDGGDEGSGCISIS-------------ISSRRVSLEKFECG 73
           L   LPGF KGK  R   +GD     +  ++ S             + S R SLE+FECG
Sbjct: 215 LCLYLPGFSKGKPVRSSRKGDSSFTRTTTMTSSQSMARTASIRDTAVLSARASLERFECG 274

Query: 74  SWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDK---------- 133
           SW SS M +++DN + G  +FDLP ELI+     +     PV AAFVFDK          
Sbjct: 275 SWTSSAM-IYDDNADLGGHFFDLPSELIKGGPGGN-DQDDPVSAAFVFDKEPNLDKEIKG 334

Query: 134 -AKLAAAAAASS------VSVRASAPPT-PTSSSIVITPRLRKAREEFNALLEA 156
             K + + +  S      V    S+P + PTS +  ITPRL +A E+F++ LEA
Sbjct: 335 VLKTSGSKSRRSMESPRHVRFSTSSPVSYPTSPTHSITPRLLQATEDFSSFLEA 386

[Close]

BLAST of MS022520 vs. TAIR 10
Match: AT1G30850.1 (root hair specific 4 )

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11
Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 2   EKLRCGAGALWLLVAVLPGFRKGK-----GEREEEGDGGDEGSGCISISISSRRVSLEKF 61
           E  +C A  L      LPGF K K      +R+   +     +   + S  S R SLEKF
Sbjct: 122 EDFKCNAFCL-----SLPGFGKNKLIRSSSKRQNSMEKKMIRASSFTGSTVSVRASLEKF 181

Query: 62  ECGSWASSGMVVHEDNEESGSLYFDLPIELIR-NSVSVSVG--AQSPVKAAFVFDKAKLA 121
           ECGSWAS+  ++    +++G L+FD P+E+ + NS   + G   Q PV + F+FD+    
Sbjct: 182 ECGSWASTTALI----QDNGRLFFDFPVEMTKCNSRGGNGGRDVQEPVTSGFLFDRETET 241

Query: 122 AAAAA-----------------------SSVSVRASAPPTPTSSSIVITPRLRKAREEFN 156
            A  +                        S S  +++   PTS    ITPRLRKAR++FN
Sbjct: 242 LALRSVLKTRSTRDHRRSAESSPQRRVRFSTSSSSASVSCPTSPRTCITPRLRKARDDFN 297

[Close]

BLAST of MS022520 vs. TAIR 10
Match: AT5G44660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G20190.1); Has 944 Blast hits to 462 proteins in 141 species: Archae - 2; Bacteria - 370; Metazoa - 161; Fungi - 102; Plants - 64; Viruses - 6; Other Eukaryotes - 239 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-10
Identity = 63/194 (32.47%), Postives = 85/194 (43.81%), Query Frame = 0


Query: 2   EKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGD----------EGSGCISIS------ 61
           ++ +C A     L   LPGF KGK  R  + D               S  I++S      
Sbjct: 238 DRFKCNA-----LCLFLPGFSKGKPIRSSQKDDSSSFTRTTTMTRSSSSTITVSRTVSVR 297

Query: 62  -------ISSRRVSLEKFECGSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQ 121
                  + S R S+EKF+CGS+ S         EE G+ +FDLP ELI+ S S      
Sbjct: 298 ESTTTTTVISARASMEKFDCGSYTSESC-----GEEGGNHFFDLPSELIK-SGSGDNDHD 357

Query: 122 SPVKAAFVFDKAKLAA-------------AAAASSVSVR----ASAPPTPTSSSIVITPR 156
            PV AAFVFDK  +                 A  S S+R    +++ P    +S  I+PR
Sbjct: 358 EPVSAAFVFDKEPVEKEIKGVLKVSGSKNRKAMESPSLRQVRFSTSSPVSYPTSPAISPR 417

[Close]

BLAST of MS022520 vs. TAIR 10
Match: AT2G34910.1 (BEST Arabidopsis thaliana protein match is: root hair specific 4 (TAIR:AT1G30850.1); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 60/180 (33.33%), Postives = 78/180 (43.33%), Query Frame = 0


Query: 2   EKLRCGAGALWLLVAVLPGFRKGKGEREEEGDGGDE---GSGCISISISSRRVSLEKFEC 61
           E  +C A  L      LPGF K      +  D   +    +   S S  S   SLEKFEC
Sbjct: 118 ENFKCNAFCL-----SLPGFGKRPVRSPKSEDSIKKKMIKASSFSNSTVSLSASLEKFEC 177

Query: 62  GSWASSGMVVHEDNEESGSLYFDLPIELIRNSVSVSVGAQSPVKAAFVFDK-----AKLA 121
           GSWAS+  +      E+G LY DLP+E+I+         Q PV + F FDK     A  +
Sbjct: 178 GSWASTTAL----TRENGRLYIDLPVEMIKCG---GGDVQEPVSSGFFFDKETGSLALRS 237

Query: 122 AAAAASSVSVR------------------ASAPPTPTSSSIVITPRLRKAREEFNALLEA 156
               +SS+S R                   ++   P S    ITPRL KAR++FN  L A
Sbjct: 238 VLKKSSSLSGRQLRDLAETSPQRRVRFSTTTSDSCPASPRTCITPRLLKARDDFNTFLAA 285

The following BLAST results are available for this feature:

BLAST of MS022520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146694.1	1.1e-78	100.00	uncharacterized protein LOC111015837 [Momordica charantia]	[more]
XP_011658372.1	4.4e-32	60.36	uncharacterized protein LOC105435976 [Cucumis sativus]	[more]
XP_022978627.1	4.4e-32	57.67	uncharacterized protein LOC111478548 [Cucurbita maxima]	[more]
XP_023543164.1	5.7e-32	57.67	uncharacterized protein LOC111803119 [Cucurbita pepo subsp. pepo]	[more]
KAA0052411.1	7.5e-32	59.76	ycf3-interacting protein 1 [Cucumis melo var. makuwa]	[more]

BLAST of MS022520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYT9	5.1e-79	100.00	uncharacterized protein LOC111015837 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1ILL2	2.1e-32	57.67	uncharacterized protein LOC111478548 OS=Cucurbita maxima OX=3661 GN=LOC111478548...	[more]
A0A0A0KME4	2.1e-32	60.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538760 PE=4 SV=1	[more]
A0A5A7UFW0	3.6e-32	59.76	Ycf3-interacting protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A6J1EGQ7	1.1e-31	57.06	uncharacterized protein LOC111433224 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]

BLAST of MS022520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20190.1	2.8e-13	36.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30850.1	5.9e-11	32.43	root hair specific 4	[more]
AT5G44660.1	6.5e-10	32.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G34910.1	1.9e-09	33.33	BEST Arabidopsis thaliana protein match is: root hair specific 4 (TAIR:AT1G30850...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33672:SF2	OS07G0499850 PROTEIN	coord: 4..157
IPR040340	Chloroplast enhancing stress tolerance protein	PANTHER	PTHR33672	YCF3-INTERACTING PROTEIN 1, CHLOROPLASTIC	coord: 4..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022520.1	MS022520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
biological_process	GO:0080183	response to photooxidative stress
cellular_component	GO:0009535	chloroplast thylakoid membrane