MS022503 (gene) Bitter gourd (TR) v1

Overview
NameMS022503
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionExostosin domain-containing protein
Locationscaffold720: 98516 .. 98666 (-)
RNA-Seq ExpressionMS022503
SyntenyMS022503
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCAGATTTCGGGGGATTGAGGGCATACCAAGCTTCATTAGTCGAGGACGTGATTTTGGCGTGTTCTCATCAGACCATATAATGGTGACGTTTGTCTCATAGCTCGCAAGGCCTTGTTGTCCTTTGTAGGCAACCGGTTTAAAAAAGAG

mRNA sequence

TTATCAGATTTCGGGGGATTGAGGGCATACCAAGCTTCATTAGTCGAGGACGTGATTTTGGCGTGTTCTCATCAGACCTATAATGGTGACGTTTGTCTCATAGCTCGCAAGGCCTTGTTGTCCTTTGTAGGCAACCGGTTTAAAAAAGAG

Coding sequence (CDS)

TTATCAGATTTCGGGGGATTGAGGGCATACCAAGCTTCATTAGTCGAGGACGTGATTTTGGCGTGTTCTCATCAGACCTATAATGGTGACGTTTGTCTCATAGCTCGCAAGGCCTTGTTGTCCTTTGTAGGCAACCGGTTTAAAAAAGAG

Protein sequence

LSDFGGLRAYQASLVEDVILACSHQTYNGDVCLIARKALLSFVGNRFKKE
Homology
[Close]
BLAST of MS022503 vs. NCBI nr
Match: PKI59393.1 (hypothetical protein CRG98_020224, partial [Punica granatum])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR  QASLV+D+IL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 245 VSDFGRLRPEQASLVKDIILPYSHRINTYNGDVGVEKRKTLLFFMGNRFRKE 296

[Close]
BLAST of MS022503 vs. NCBI nr
Match: XP_031393596.1 (probable arabinosyltransferase ARAD1 [Punica granatum])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR  QASLV+D+IL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 245 VSDFGRLRPEQASLVKDIILPYSHRINTYNGDVGVEKRKTLLFFMGNRFRKE 296

[Close]
BLAST of MS022503 vs. NCBI nr
Match: OWM83589.1 (hypothetical protein CDL15_Pgr004018 [Punica granatum])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR  QASLV+D+IL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 237 VSDFGRLRPEQASLVKDIILPYSHRINTYNGDVGVEKRKTLLFFMGNRFRKE 288

[Close]
BLAST of MS022503 vs. NCBI nr
Match: XP_038895021.1 (probable arabinosyltransferase ARAD1 isoform X2 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LRA QASLV+DVIL  SH+  TYNGD+ +  RK LL F+GNR++KE
Sbjct: 229 VSDFGRLRADQASLVKDVILPYSHRINTYNGDIGVENRKTLLFFMGNRYRKE 280

[Close]
BLAST of MS022503 vs. NCBI nr
Match: XP_038895020.1 (probable arabinosyltransferase ARAD1 isoform X1 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LRA QASLV+DVIL  SH+  TYNGD+ +  RK LL F+GNR++KE
Sbjct: 229 VSDFGRLRADQASLVKDVILPYSHRINTYNGDIGVENRKTLLFFMGNRYRKE 280

[Close]
BLAST of MS022503 vs. ExPASy Swiss-Prot
Match: Q9FLA5 (Probable arabinosyltransferase ARAD2 OS=Arabidopsis thaliana OX=3702 GN=ARAD2 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.3e-05
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           ++DF  LRA Q SLV+DVI+  SH+   Y G++ +  R  LL F+GNR++K+
Sbjct: 208 VTDFDRLRADQGSLVKDVIIPYSHRIDAYEGELGVKQRTNLLFFMGNRYRKD 259

[Close]
BLAST of MS022503 vs. ExPASy TrEMBL
Match: A0A2I0JU38 (Exostosin domain-containing protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_020224 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR  QASLV+D+IL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 245 VSDFGRLRPEQASLVKDIILPYSHRINTYNGDVGVEKRKTLLFFMGNRFRKE 296

[Close]
BLAST of MS022503 vs. ExPASy TrEMBL
Match: A0A218XFX4 (Exostosin domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004018 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR  QASLV+D+IL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 237 VSDFGRLRPEQASLVKDIILPYSHRINTYNGDVGVEKRKTLLFFMGNRFRKE 288

[Close]
BLAST of MS022503 vs. ExPASy TrEMBL
Match: A0A6P8DJQ3 (probable arabinosyltransferase ARAD1 OS=Punica granatum OX=22663 GN=LOC116205219 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR  QASLV+D+IL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 245 VSDFGRLRPEQASLVKDIILPYSHRINTYNGDVGVEKRKTLLFFMGNRFRKE 296

[Close]
BLAST of MS022503 vs. ExPASy TrEMBL
Match: A0A059CB93 (Exostosin domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E04252 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG L+  QASLV+DVIL  SH+  TYNGDV +  RK LL F+GNRF+KE
Sbjct: 253 VSDFGRLKPDQASLVKDVILPYSHRINTYNGDVGIEKRKTLLFFMGNRFRKE 304

[Close]
BLAST of MS022503 vs. ExPASy TrEMBL
Match: A0A6J1K3V9 (probable arabinosyltransferase ARAD1 OS=Cucurbita maxima OX=3661 GN=LOC111490422 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           +SDFG LR+ QASLV+DVI+  SH+  TYNGD+ +  RK LL F+GNR++KE
Sbjct: 229 ISDFGRLRSDQASLVKDVIIPYSHRINTYNGDIGIENRKTLLFFMGNRYRKE 280

[Close]
BLAST of MS022503 vs. TAIR 10
Match: AT5G44930.1 (Exostosin family protein )

HSP 1 Score: 47.0 bits (110), Expect = 5.2e-06
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           ++DF  LRA Q SLV+DVI+  SH+   Y G++ +  R  LL F+GNR++K+
Sbjct: 208 VTDFDRLRADQGSLVKDVIIPYSHRIDAYEGELGVKQRTNLLFFMGNRYRKD 259

[Close]
BLAST of MS022503 vs. TAIR 10
Match: AT5G44930.2 (Exostosin family protein )

HSP 1 Score: 47.0 bits (110), Expect = 5.2e-06
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 1   LSDFGGLRAYQASLVEDVILACSHQ--TYNGDVCLIARKALLSFVGNRFKKE 51
           ++DF  LRA Q SLV+DVI+  SH+   Y G++ +  R  LL F+GNR++K+
Sbjct: 208 VTDFDRLRADQGSLVKDVIIPYSHRIDAYEGELGVKQRTNLLFFMGNRYRKD 259

The following BLAST results are available for this feature:
BLAST of MS022503 vs. NCBI nr
Match NameE-valueIdentityDescription
PKI59393.15.8e-0763.46hypothetical protein CRG98_020224, partial [Punica granatum][more]
XP_031393596.15.8e-0763.46probable arabinosyltransferase ARAD1 [Punica granatum][more]
OWM83589.15.8e-0763.46hypothetical protein CDL15_Pgr004018 [Punica granatum][more]
XP_038895021.15.8e-0763.46probable arabinosyltransferase ARAD1 isoform X2 [Benincasa hispida][more]
XP_038895020.15.8e-0763.46probable arabinosyltransferase ARAD1 isoform X1 [Benincasa hispida][more]
BLAST of MS022503 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FLA57.3e-0546.15Probable arabinosyltransferase ARAD2 OS=Arabidopsis thaliana OX=3702 GN=ARAD2 PE... [more]
BLAST of MS022503 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2I0JU382.8e-0763.46Exostosin domain-containing protein (Fragment) OS=Punica granatum OX=22663 GN=CR... [more]
A0A218XFX42.8e-0763.46Exostosin domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr0040... [more]
A0A6P8DJQ32.8e-0763.46probable arabinosyltransferase ARAD1 OS=Punica granatum OX=22663 GN=LOC116205219... [more]
A0A059CB934.8e-0763.46Exostosin domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E0... [more]
A0A6J1K3V96.2e-0759.62probable arabinosyltransferase ARAD1 OS=Cucurbita maxima OX=3661 GN=LOC111490422... [more]
BLAST of MS022503 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G44930.15.2e-0646.15Exostosin family protein [more]
AT5G44930.25.2e-0646.15Exostosin family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022503.1MS022503.1mRNA