MS022497 (gene) Bitter gourd (TR) v1

Overview


Name	MS022497
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold720: 49037 .. 49417 (+)
RNA-Seq Expression	MS022497
Synteny	MS022497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAAATGTGGCTTCTCTGGTGGCCGAAGACCGTCTCCGCCGGCGGCAAAACTACCACATCCTCCGCCACCGCCGCGGTAACTGCGACTTCCCTCGCCAAAAAGGCGTCCTCCTCCTCCTCTCACTGCAACTGCGTCGCCAAACTGTTGCGGAAACTGAAGAAACGAGGGCGAGTTTTATGCAGCACTAGTGGAGAGAGCAGCGCGTTCCAGTGCCGGTACGATCCGCTGAGCTACTCTCTCAACTTCGACACCAGCGGCTGCGGAAGCTTGTTAGACGAAGATTACTATCAGTTCTGCGCGTTCTCTTCCAGATTCGCGTCAAATCCAGGAAATGCTTCTCATTCTGTCCCTGATGTAACAGTCACTGCTTCGCGC

mRNA sequence

ATGACACAAATGTGGCTTCTCTGGTGGCCGAAGACCGTCTCCGCCGGCGGCAAAACTACCACATCCTCCGCCACCGCCGCGGTAACTGCGACTTCCCTCGCCAAAAAGGCGTCCTCCTCCTCCTCTCACTGCAACTGCGTCGCCAAACTGTTGCGGAAACTGAAGAAACGAGGGCGAGTTTTATGCAGCACTAGTGGAGAGAGCAGCGCGTTCCAGTGCCGGTACGATCCGCTGAGCTACTCTCTCAACTTCGACACCAGCGGCTGCGGAAGCTTGTTAGACGAAGATTACTATCAGTTCTGCGCGTTCTCTTCCAGATTCGCGTCAAATCCAGGAAATGCTTCTCATTCTGTCCCTGATGTAACAGTCACTGCTTCGCGC

Coding sequence (CDS)

ATGACACAAATGTGGCTTCTCTGGTGGCCGAAGACCGTCTCCGCCGGCGGCAAAACTACCACATCCTCCGCCACCGCCGCGGTAACTGCGACTTCCCTCGCCAAAAAGGCGTCCTCCTCCTCCTCTCACTGCAACTGCGTCGCCAAACTGTTGCGGAAACTGAAGAAACGAGGGCGAGTTTTATGCAGCACTAGTGGAGAGAGCAGCGCGTTCCAGTGCCGGTACGATCCGCTGAGCTACTCTCTCAACTTCGACACCAGCGGCTGCGGAAGCTTGTTAGACGAAGATTACTATCAGTTCTGCGCGTTCTCTTCCAGATTCGCGTCAAATCCAGGAAATGCTTCTCATTCTGTCCCTGATGTAACAGTCACTGCTTCGCGC

Protein sequence

MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRVLCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPDVTVTASR

Homology

[Close]

BLAST of MS022497 vs. NCBI nr
Match: XP_022146664.1 (uncharacterized protein LOC111015812 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 3.0e-60
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKA S SSHCNCVAKLLRKLKKRGRV
Sbjct: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKA-SPSSHCNCVAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD 120
           LCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD
Sbjct: 61  LCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD 120

Query: 121 VTVTASR 128
           VTVTASR
Sbjct: 121 VTVTASR 126

[Close]

BLAST of MS022497 vs. NCBI nr
Match: KAG7026395.1 (hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 106/128 (82.81%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           M QMWLLWWPK  SA  KT+TSSATAAVTATSLA K   SSSHCN +AKLLRKLKKRGRV
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKV--SSSHCNRIAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVP 120
           LCST+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFCAFSSRFASNPG  S   P
Sbjct: 61  LCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAP 120

Query: 121 DVTVTASR 128
           D TVTASR
Sbjct: 121 DGTVTASR 126

[Close]

BLAST of MS022497 vs. NCBI nr
Match: XP_023518962.1 (uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 105/128 (82.03%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           M QMWLLWWPK  SA  KT+TSSAT AVTATSLA K   SSSHCN +AKLLRKLKKRGRV
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATGAVTATSLATKV--SSSHCNRIAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVP 120
           LCST+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFCAFSSRFASNPG  S   P
Sbjct: 61  LCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAP 120

Query: 121 DVTVTASR 128
           D TVTASR
Sbjct: 121 DGTVTASR 126

[Close]

BLAST of MS022497 vs. NCBI nr
Match: XP_022926526.1 (uncharacterized protein LOC111433647 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-46
Identity = 105/128 (82.03%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           M QMWLLWWPK  SA  KT+TSSATAAVTATSLA K   SSSHCN +AKLLRKLKKRGRV
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKV--SSSHCNRIAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVP 120
           LCST+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFC FSSRFASNPG  S   P
Sbjct: 61  LCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVSRPAP 120

Query: 121 DVTVTASR 128
           D TVTASR
Sbjct: 121 DGTVTASR 126

[Close]

BLAST of MS022497 vs. NCBI nr
Match: KAG6594391.1 (hypothetical protein SDJN03_10944, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 4.2e-46
Identity = 104/125 (83.20%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 4   MWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRVLCS 63
           MWLLWWPK  SA  KT+TSSATAAVTATSLA K   SSSHCN +AKLLRKLKKRGRVLCS
Sbjct: 1   MWLLWWPKNSSAAAKTSTSSATAAVTATSLATKV--SSSHCNRIAKLLRKLKKRGRVLCS 60

Query: 64  TSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPDVT 123
           T+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFCAFSSRFASNPG  S   PD T
Sbjct: 61  TTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAPDGT 120

Query: 124 VTASR 128
           VTASR
Sbjct: 121 VTASR 123

[Close]

BLAST of MS022497 vs. ExPASy TrEMBL
Match: A0A6J1CYQ9 (uncharacterized protein LOC111015812 OS=Momordica charantia OX=3673 GN=LOC111015812 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKA S SSHCNCVAKLLRKLKKRGRV
Sbjct: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKA-SPSSHCNCVAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD 120
           LCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD
Sbjct: 61  LCSTSGESSAFQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPD 120

Query: 121 VTVTASR 128
           VTVTASR
Sbjct: 121 VTVTASR 126

[Close]

BLAST of MS022497 vs. ExPASy TrEMBL
Match: A0A6J1EF60 (uncharacterized protein LOC111433647 OS=Cucurbita moschata OX=3662 GN=LOC111433647 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.4e-47
Identity = 105/128 (82.03%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           M QMWLLWWPK  SA  KT+TSSATAAVTATSLA K   SSSHCN +AKLLRKLKKRGRV
Sbjct: 1   MAQMWLLWWPKNSSAAAKTSTSSATAAVTATSLATKV--SSSHCNRIAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVP 120
           LCST+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFC FSSRFASNPG  S   P
Sbjct: 61  LCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCTFSSRFASNPGTVSRPAP 120

Query: 121 DVTVTASR 128
           D TVTASR
Sbjct: 121 DGTVTASR 126

[Close]

BLAST of MS022497 vs. ExPASy TrEMBL
Match: A0A6J1KS95 (uncharacterized protein LOC111497167 OS=Cucurbita maxima OX=3661 GN=LOC111497167 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 102/128 (79.69%), Postives = 108/128 (84.38%), Query Frame = 0


Query: 1   MTQMWLLWWPKTVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRV 60
           M QMWLLWWPK  SA  K++T SAT AV+ATSLA K   SSSHCN +AKLLRKLKKRGRV
Sbjct: 1   MAQMWLLWWPKNSSAAAKSSTPSATGAVSATSLASKV--SSSHCNRIAKLLRKLKKRGRV 60

Query: 61  LCSTSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVP 120
           LCST+GESS+ FQCRYDPLSYSLNFDTSGCGSLLDE YYQFCAFSSRFASNPG  S   P
Sbjct: 61  LCSTTGESSSNFQCRYDPLSYSLNFDTSGCGSLLDEHYYQFCAFSSRFASNPGTVSRPAP 120

Query: 121 DVTVTASR 128
           D TVTASR
Sbjct: 121 DGTVTASR 126

[Close]

BLAST of MS022497 vs. ExPASy TrEMBL
Match: A0A6J1EFV9 (uncharacterized protein LOC111433012 OS=Cucurbita moschata OX=3662 GN=LOC111433012 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 100/126 (79.37%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 4   MWLLWWPK-TVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRVLC 63
           MWLLWWPK   SA  KT TSS  AAVTATSLA+KA  SSS+CNC AKLLRKLKKR RVL 
Sbjct: 1   MWLLWWPKNNASADAKTCTSS--AAVTATSLARKA--SSSNCNCFAKLLRKLKKRSRVLR 60

Query: 64  STSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPDV 123
           ST+GESS+ FQCRYDPLSYSLNFDTSGCG LLDE YYQ+CAFSSRFASNPGN SHS P  
Sbjct: 61  STAGESSSTFQCRYDPLSYSLNFDTSGCGGLLDEHYYQYCAFSSRFASNPGNVSHSAPVA 120

Query: 124 TVTASR 128
           TVT SR
Sbjct: 121 TVTTSR 122

[Close]

BLAST of MS022497 vs. ExPASy TrEMBL
Match: A0A6J1IQV7 (uncharacterized protein LOC111477613 OS=Cucurbita maxima OX=3661 GN=LOC111477613 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 100/126 (79.37%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 4   MWLLWWPK-TVSAGGKTTTSSATAAVTATSLAKKASSSSSHCNCVAKLLRKLKKRGRVLC 63
           MWLLWWPK   S+G KT TSS  AAVTATSLA+KA  SSS+ NC AKLLRKLKKR RVL 
Sbjct: 1   MWLLWWPKNNASSGAKTCTSS--AAVTATSLARKA--SSSNYNCFAKLLRKLKKRSRVLR 60

Query: 64  STSGESSA-FQCRYDPLSYSLNFDTSGCGSLLDEDYYQFCAFSSRFASNPGNASHSVPDV 123
           ST+GESS+ FQCRYDPLSYSLNFDTSGCG LLDE YYQ+CAFSSRFASNPGN SHS P V
Sbjct: 61  STAGESSSTFQCRYDPLSYSLNFDTSGCGGLLDEHYYQYCAFSSRFASNPGNVSHSAPVV 120

Query: 124 TVTASR 128
           TVT SR
Sbjct: 121 TVTTSR 122

[Close]

BLAST of MS022497 vs. TAIR 10
Match: AT4G19980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-16
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 27  AVTATSLAKKAS--SSSSHC--NCVAKLLRKLKKRGRVLCSTS---GESSAFQCRYDPLS 86
           A TAT++ KK++  + + +C   C+A+L+RKLKK+GR+L +TS    + S+ QCRYDP+S
Sbjct: 12  ATTATAVTKKSNVPTPTPNCCVTCLARLIRKLKKKGRLLLATSTARRQGSSLQCRYDPMS 71

Query: 87  YSLNFDTSGCGSLL-DEDYY-QFCAFSSRFASNPGNASHSVP 120
           YSLNFD   CG+L  DEDYY +F AFSSR+ +   N     P
Sbjct: 72  YSLNFDGGACGTLPDDEDYYLRFYAFSSRYVTTTNNIRKRPP 113

The following BLAST results are available for this feature:

BLAST of MS022497 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146664.1	3.0e-60	98.43	uncharacterized protein LOC111015812 [Momordica charantia]	[more]
KAG7026395.1	3.8e-47	82.81	hypothetical protein SDJN02_10395, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023518962.1	1.1e-46	82.03	uncharacterized protein LOC111782330 [Cucurbita pepo subsp. pepo]	[more]
XP_022926526.1	1.1e-46	82.03	uncharacterized protein LOC111433647 [Cucurbita moschata]	[more]
KAG6594391.1	4.2e-46	83.20	hypothetical protein SDJN03_10944, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS022497 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYQ9	1.5e-60	98.43	uncharacterized protein LOC111015812 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1EF60	5.4e-47	82.03	uncharacterized protein LOC111433647 OS=Cucurbita moschata OX=3662 GN=LOC1114336...	[more]
A0A6J1KS95	1.3e-45	79.69	uncharacterized protein LOC111497167 OS=Cucurbita maxima OX=3661 GN=LOC111497167...	[more]
A0A6J1EFV9	1.5e-41	79.37	uncharacterized protein LOC111433012 OS=Cucurbita moschata OX=3662 GN=LOC1114330...	[more]
A0A6J1IQV7	3.4e-41	79.37	uncharacterized protein LOC111477613 OS=Cucurbita maxima OX=3661 GN=LOC111477613...	[more]

BLAST of MS022497 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19980.1	3.7e-16	49.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 1..111
None	No IPR available	PANTHER	PTHR33168:SF42	EXPRESSED PROTEIN	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022497.1	MS022497.1	mRNA